Wall clock time and date at job start Tue Mar 31 2020 06:04:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46901 * 1 3 3 C 1.46851 * 110.99882 * 2 1 4 4 C 1.53038 * 109.52447 * 185.84107 * 3 2 1 5 5 C 1.53121 * 109.27700 * 300.82363 * 4 3 2 6 6 C 1.53116 * 109.16211 * 57.65214 * 5 4 3 7 7 C 1.46840 * 111.00289 * 124.20963 * 2 1 3 8 8 H 1.09005 * 109.46598 * 294.18007 * 7 2 1 9 9 C 1.50701 * 109.46263 * 54.14575 * 7 2 1 10 10 O 1.21283 * 119.99929 * 19.99635 * 9 7 2 11 11 N 1.34778 * 120.00029 * 200.00265 * 9 7 2 12 12 C 1.46497 * 119.99784 * 180.02562 * 11 9 7 13 13 C 1.53008 * 109.47119 * 179.97438 * 12 11 9 14 14 H 1.09000 * 112.73496 * 303.75821 * 13 12 11 15 15 C 1.53497 * 113.46867 * 172.93693 * 13 12 11 16 16 C 1.53493 * 83.34163 * 219.15315 * 15 13 12 17 17 N 1.47063 * 113.46530 * 74.49995 * 13 12 11 18 18 C 1.36935 * 136.06067 * 321.94046 * 17 13 12 19 19 H 1.07992 * 120.00266 * 359.97438 * 18 17 13 20 20 C 1.38815 * 119.99959 * 179.97438 * 18 17 13 21 21 N 1.31625 * 120.00071 * 0.02562 * 20 18 17 22 22 Si 1.86797 * 119.99996 * 179.97438 * 20 18 17 23 23 H 1.48503 * 109.47396 * 359.97438 * 22 20 18 24 24 H 1.48496 * 109.47319 * 119.99979 * 22 20 18 25 25 H 1.48507 * 109.47329 * 240.00290 * 22 20 18 26 26 H 1.09002 * 109.47401 * 56.04503 * 1 2 3 27 27 H 1.09001 * 109.46874 * 296.04515 * 1 2 3 28 28 H 1.09004 * 109.46970 * 176.04649 * 1 2 3 29 29 H 1.09001 * 109.46189 * 305.85618 * 3 2 1 30 30 H 1.08996 * 109.46134 * 65.82164 * 3 2 1 31 31 H 1.08999 * 109.50083 * 60.76193 * 4 3 2 32 32 H 1.08997 * 109.50154 * 180.84175 * 4 3 2 33 33 H 1.09004 * 109.52192 * 177.56278 * 5 4 3 34 34 H 1.09001 * 109.51881 * 297.74501 * 5 4 3 35 35 H 1.08999 * 109.50046 * 62.28769 * 6 5 4 36 36 H 1.08996 * 109.50163 * 182.36504 * 6 5 4 37 37 H 0.96998 * 119.99939 * 359.97438 * 11 9 7 38 38 H 1.08997 * 109.47229 * 299.99452 * 12 11 9 39 39 H 1.08999 * 109.47417 * 59.99641 * 12 11 9 40 40 H 1.08998 * 114.20315 * 332.74387 * 15 13 12 41 41 H 1.09006 * 114.20149 * 105.56384 * 15 13 12 42 42 H 1.09000 * 113.46760 * 271.28741 * 16 15 13 43 43 H 1.08999 * 113.51667 * 140.86421 * 16 15 13 44 44 H 0.97000 * 119.99484 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9952 1.3710 0.0000 4 6 3.5181 1.3343 -0.1468 5 6 4.1188 0.5370 1.0143 6 6 3.5182 -0.8714 1.0207 7 6 1.9953 -0.7707 1.1337 8 1 1.7325 -0.2709 2.0660 9 6 1.3983 -2.1544 1.1205 10 8 0.9165 -2.5972 0.0994 11 7 1.3997 -2.8996 2.2435 12 6 0.8199 -4.2449 2.2305 13 6 0.9499 -4.8698 3.6211 14 1 1.9801 -4.8966 3.9762 15 6 0.2194 -6.2127 3.7586 16 6 -0.1381 -5.6724 5.1501 17 7 0.0062 -4.3149 4.6031 18 6 -0.5112 -3.0786 4.8840 19 1 -0.2167 -2.2232 4.2941 20 6 -1.4142 -2.9247 5.9269 21 7 -1.7728 -3.9671 6.6462 22 14 -2.1195 -1.2380 6.3105 23 1 -1.5594 -0.2403 5.3639 24 1 -3.5975 -1.2765 6.1727 25 1 -1.7617 -0.8562 7.7003 26 1 -0.3634 0.5740 -0.8524 27 1 -0.3633 0.4512 0.9233 28 1 -0.3633 -1.0253 -0.0709 29 1 1.5634 1.9258 -0.8330 30 1 1.7324 1.8608 0.9375 31 1 3.7813 0.8569 -1.0907 32 1 3.9097 2.3514 -0.1317 33 1 5.1998 0.4715 0.8904 34 1 3.8887 1.0355 1.9559 35 1 3.7814 -1.3835 0.0952 36 1 3.9105 -1.4304 1.8702 37 1 1.7853 -2.5455 3.0601 38 1 -0.2333 -4.1840 1.9563 39 1 1.3493 -4.8618 1.5044 40 1 -0.6343 -6.3274 3.0907 41 1 0.8786 -7.0807 3.7719 42 1 0.6021 -5.9139 5.9129 43 1 -1.1557 -5.9095 5.4605 44 1 -2.4036 -3.8594 7.3752 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001038417212.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:04:29 Heat of formation + Delta-G solvation = 22.001911 kcal Electronic energy + Delta-G solvation = -23190.315218 eV Core-core repulsion = 19951.320745 eV Total energy + Delta-G solvation = -3238.994473 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.184 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.17535 -38.48458 -37.54451 -34.17636 -33.37901 -32.26281 -31.30929 -28.13117 -27.72423 -26.61444 -23.94440 -23.50390 -22.93552 -21.80651 -20.33648 -19.71966 -19.17995 -17.25999 -16.47182 -16.06823 -15.39947 -15.30085 -14.86036 -14.63842 -14.38437 -14.31874 -13.88855 -13.51422 -13.38911 -13.12448 -12.80612 -12.72469 -12.17967 -11.83212 -11.66518 -11.54115 -11.39699 -11.15071 -11.04305 -10.93901 -10.83113 -10.78205 -10.58793 -10.51698 -10.00122 -9.85708 -9.46832 -9.12226 -8.85471 -8.54316 -8.27906 -6.93362 -5.81076 -3.13468 2.94286 3.33296 3.37428 3.39873 3.41385 3.99806 4.38891 4.65114 4.71758 4.79829 5.05220 5.10299 5.17494 5.23525 5.37125 5.40246 5.47675 5.52120 5.55007 5.57369 5.70204 5.72694 5.77841 5.82013 5.89891 5.95417 5.98203 6.10440 6.20455 6.23519 6.30988 6.39263 6.57892 6.71051 6.89723 6.97358 7.07413 7.19808 7.36983 7.54506 7.93441 7.94063 8.61538 8.98794 9.66096 10.59361 11.36204 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.016473 B = 0.005244 C = 0.004463 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1699.323354 B = 5338.531363 C = 6271.934401 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.013 3.987 2 N -0.519 5.519 3 C 0.055 3.945 4 C -0.118 4.118 5 C -0.120 4.120 6 C -0.105 4.105 7 C 0.068 3.932 8 H 0.061 0.939 9 C 0.514 3.486 10 O -0.533 6.533 11 N -0.713 5.713 12 C 0.123 3.877 13 C 0.127 3.873 14 H 0.048 0.952 15 C -0.161 4.161 16 C 0.151 3.849 17 N -0.602 5.602 18 C -0.212 4.212 19 H 0.079 0.921 20 C -0.007 4.007 21 N -0.917 5.917 22 Si 0.908 3.092 23 H -0.281 1.281 24 H -0.290 1.290 25 H -0.290 1.290 26 H 0.066 0.934 27 H 0.022 0.978 28 H 0.091 0.909 29 H 0.077 0.923 30 H 0.033 0.967 31 H 0.072 0.928 32 H 0.066 0.934 33 H 0.068 0.932 34 H 0.062 0.938 35 H 0.077 0.923 36 H 0.072 0.928 37 H 0.402 0.598 38 H 0.070 0.930 39 H 0.059 0.941 40 H 0.079 0.921 41 H 0.058 0.942 42 H 0.025 0.975 43 H 0.072 0.928 44 H 0.253 0.747 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.514 6.354 -10.119 15.916 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 N -0.244 5.244 3 C -0.073 4.073 4 C -0.156 4.156 5 C -0.157 4.157 6 C -0.144 4.144 7 C -0.044 4.044 8 H 0.079 0.921 9 C 0.299 3.701 10 O -0.410 6.410 11 N -0.364 5.364 12 C -0.001 4.001 13 C 0.019 3.981 14 H 0.065 0.935 15 C -0.200 4.200 16 C 0.026 3.974 17 N -0.327 5.327 18 C -0.340 4.340 19 H 0.097 0.903 20 C -0.204 4.204 21 N -0.564 5.564 22 Si 0.738 3.262 23 H -0.207 1.207 24 H -0.217 1.217 25 H -0.217 1.217 26 H 0.085 0.915 27 H 0.040 0.960 28 H 0.110 0.890 29 H 0.095 0.905 30 H 0.051 0.949 31 H 0.091 0.909 32 H 0.085 0.915 33 H 0.086 0.914 34 H 0.080 0.920 35 H 0.096 0.904 36 H 0.091 0.909 37 H 0.236 0.764 38 H 0.088 0.912 39 H 0.077 0.923 40 H 0.098 0.902 41 H 0.077 0.923 42 H 0.043 0.957 43 H 0.090 0.910 44 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges 10.090 6.050 -11.091 16.169 hybrid contribution -0.520 1.558 1.632 2.315 sum 9.571 7.608 -9.459 15.458 Atomic orbital electron populations 1.22600 0.86451 1.04489 0.99885 1.61669 1.08407 1.12632 1.41688 1.22143 0.95596 0.89012 1.00581 1.21605 0.94491 1.00018 0.99437 1.21581 1.00015 0.95370 0.98775 1.21526 0.91774 0.97840 1.03231 1.21608 0.96303 0.92742 0.93739 0.92149 1.20297 0.79405 0.86775 0.83604 1.90636 1.45799 1.72595 1.31977 1.45994 1.60663 1.17372 1.12364 1.21783 0.98677 0.81568 0.98112 1.22422 0.94493 0.92195 0.88961 0.93461 1.23655 0.99949 0.95144 1.01230 1.22029 1.00549 0.83645 0.91221 1.45674 1.47426 1.04731 1.34911 1.18867 1.19379 0.83761 1.11972 0.90282 1.24769 1.00080 0.97332 0.98211 1.69837 1.36497 1.27911 1.22169 0.86121 0.78926 0.83349 0.77787 1.20659 1.21663 1.21745 0.91500 0.95991 0.89038 0.90496 0.94920 0.90946 0.91522 0.91358 0.91963 0.90444 0.90916 0.76419 0.91204 0.92320 0.90206 0.92328 0.95746 0.90987 0.93714 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.20 9.10 60.07 0.55 0.74 16 2 N -0.52 -7.31 4.51 -236.32 -1.07 -8.37 16 3 C 0.05 0.61 5.46 -3.83 -0.02 0.58 16 4 C -0.12 -1.10 6.09 -26.65 -0.16 -1.27 16 5 C -0.12 -1.13 6.00 -26.61 -0.16 -1.29 16 6 C -0.11 -1.22 5.36 -26.65 -0.14 -1.36 16 7 C 0.07 0.96 2.24 -68.88 -0.15 0.81 16 8 H 0.06 0.86 8.14 -51.93 -0.42 0.43 16 9 C 0.51 8.81 6.26 -10.98 -0.07 8.74 16 10 O -0.53 -10.75 14.52 5.55 0.08 -10.67 16 11 N -0.71 -12.11 5.33 -60.29 -0.32 -12.43 16 12 C 0.12 2.22 5.52 -4.04 -0.02 2.20 16 13 C 0.13 2.42 4.10 -72.41 -0.30 2.12 16 14 H 0.05 0.86 8.14 -51.93 -0.42 0.44 16 15 C -0.16 -2.90 8.03 -26.22 -0.21 -3.11 16 16 C 0.15 3.43 7.39 -8.52 -0.06 3.37 16 17 N -0.60 -14.48 3.65 -177.03 -0.65 -15.12 16 18 C -0.21 -5.63 10.55 -15.06 -0.16 -5.79 16 19 H 0.08 2.02 7.50 -52.49 -0.39 1.62 16 20 C -0.01 -0.20 5.50 -17.43 -0.10 -0.29 16 21 N -0.92 -26.74 11.51 55.49 0.64 -26.11 16 22 Si 0.91 21.85 29.55 -169.99 -5.02 16.83 16 23 H -0.28 -6.55 7.11 56.52 0.40 -6.14 16 24 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 25 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 26 H 0.07 0.84 8.10 -51.93 -0.42 0.42 16 27 H 0.02 0.32 8.14 -51.93 -0.42 -0.11 16 28 H 0.09 1.59 5.62 -51.93 -0.29 1.30 16 29 H 0.08 0.77 8.09 -51.93 -0.42 0.35 16 30 H 0.03 0.36 8.14 -51.93 -0.42 -0.06 16 31 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 32 H 0.07 0.51 8.14 -51.93 -0.42 0.08 16 33 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 34 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 35 H 0.08 0.96 8.14 -51.93 -0.42 0.54 16 36 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 37 H 0.40 6.52 8.37 -40.82 -0.34 6.18 16 38 H 0.07 1.44 8.14 -51.93 -0.42 1.02 16 39 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 40 H 0.08 1.44 8.12 -51.93 -0.42 1.02 16 41 H 0.06 0.89 8.14 -51.93 -0.42 0.46 16 42 H 0.02 0.56 8.14 -51.93 -0.42 0.14 16 43 H 0.07 1.83 7.12 -51.93 -0.37 1.46 16 44 H 0.25 7.17 8.31 -40.82 -0.34 6.83 16 LS Contribution 347.24 15.07 5.23 5.23 Total: -1.00 -31.19 347.24 -9.83 -41.02 By element: Atomic # 1 Polarization: 11.89 SS G_CDS: -7.71 Total: 4.18 kcal Atomic # 6 Polarization: 6.45 SS G_CDS: -1.01 Total: 5.44 kcal Atomic # 7 Polarization: -60.64 SS G_CDS: -1.39 Total: -62.04 kcal Atomic # 8 Polarization: -10.75 SS G_CDS: 0.08 Total: -10.67 kcal Atomic # 14 Polarization: 21.85 SS G_CDS: -5.02 Total: 16.83 kcal Total LS contribution 5.23 Total: 5.23 kcal Total: -31.19 -9.83 -41.02 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001038417212.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.021 kcal (2) G-P(sol) polarization free energy of solvation -31.190 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.830 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.828 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.019 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.002 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds