Wall clock time and date at job start Tue Mar 31 2020 06:04:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46901 * 1 3 3 C 1.46851 * 110.99882 * 2 1 4 4 C 1.53038 * 109.52447 * 185.84107 * 3 2 1 5 5 C 1.53121 * 109.27700 * 300.82363 * 4 3 2 6 6 C 1.53116 * 109.16211 * 57.65214 * 5 4 3 7 7 C 1.46840 * 111.00289 * 124.20963 * 2 1 3 8 8 H 1.09005 * 109.46598 * 294.18007 * 7 2 1 9 9 C 1.50701 * 109.46263 * 54.14575 * 7 2 1 10 10 O 1.21283 * 119.99929 * 19.99635 * 9 7 2 11 11 N 1.34778 * 120.00029 * 200.00265 * 9 7 2 12 12 C 1.46497 * 119.99784 * 180.02562 * 11 9 7 13 13 C 1.53008 * 109.47119 * 179.97438 * 12 11 9 14 14 H 1.09000 * 112.73496 * 303.75821 * 13 12 11 15 15 C 1.53497 * 113.46867 * 172.93693 * 13 12 11 16 16 C 1.53493 * 83.34163 * 219.15315 * 15 13 12 17 17 N 1.47063 * 113.46530 * 74.49995 * 13 12 11 18 18 C 1.36935 * 136.06067 * 321.94046 * 17 13 12 19 19 H 1.07992 * 120.00266 * 359.97438 * 18 17 13 20 20 C 1.38815 * 119.99959 * 179.97438 * 18 17 13 21 21 N 1.31625 * 120.00071 * 0.02562 * 20 18 17 22 22 Si 1.86797 * 119.99996 * 179.97438 * 20 18 17 23 23 H 1.48503 * 109.47396 * 359.97438 * 22 20 18 24 24 H 1.48496 * 109.47319 * 119.99979 * 22 20 18 25 25 H 1.48507 * 109.47329 * 240.00290 * 22 20 18 26 26 H 1.09002 * 109.47401 * 56.04503 * 1 2 3 27 27 H 1.09001 * 109.46874 * 296.04515 * 1 2 3 28 28 H 1.09004 * 109.46970 * 176.04649 * 1 2 3 29 29 H 1.09001 * 109.46189 * 305.85618 * 3 2 1 30 30 H 1.08996 * 109.46134 * 65.82164 * 3 2 1 31 31 H 1.08999 * 109.50083 * 60.76193 * 4 3 2 32 32 H 1.08997 * 109.50154 * 180.84175 * 4 3 2 33 33 H 1.09004 * 109.52192 * 177.56278 * 5 4 3 34 34 H 1.09001 * 109.51881 * 297.74501 * 5 4 3 35 35 H 1.08999 * 109.50046 * 62.28769 * 6 5 4 36 36 H 1.08996 * 109.50163 * 182.36504 * 6 5 4 37 37 H 0.96998 * 119.99939 * 359.97438 * 11 9 7 38 38 H 1.08997 * 109.47229 * 299.99452 * 12 11 9 39 39 H 1.08999 * 109.47417 * 59.99641 * 12 11 9 40 40 H 1.08998 * 114.20315 * 332.74387 * 15 13 12 41 41 H 1.09006 * 114.20149 * 105.56384 * 15 13 12 42 42 H 1.09000 * 113.46760 * 271.28741 * 16 15 13 43 43 H 1.08999 * 113.51667 * 140.86421 * 16 15 13 44 44 H 0.97000 * 119.99484 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9952 1.3710 0.0000 4 6 3.5181 1.3343 -0.1468 5 6 4.1188 0.5370 1.0143 6 6 3.5182 -0.8714 1.0207 7 6 1.9953 -0.7707 1.1337 8 1 1.7325 -0.2709 2.0660 9 6 1.3983 -2.1544 1.1205 10 8 0.9165 -2.5972 0.0994 11 7 1.3997 -2.8996 2.2435 12 6 0.8199 -4.2449 2.2305 13 6 0.9499 -4.8698 3.6211 14 1 1.9801 -4.8966 3.9762 15 6 0.2194 -6.2127 3.7586 16 6 -0.1381 -5.6724 5.1501 17 7 0.0062 -4.3149 4.6031 18 6 -0.5112 -3.0786 4.8840 19 1 -0.2167 -2.2232 4.2941 20 6 -1.4142 -2.9247 5.9269 21 7 -1.7728 -3.9671 6.6462 22 14 -2.1195 -1.2380 6.3105 23 1 -1.5594 -0.2403 5.3639 24 1 -3.5975 -1.2765 6.1727 25 1 -1.7617 -0.8562 7.7003 26 1 -0.3634 0.5740 -0.8524 27 1 -0.3633 0.4512 0.9233 28 1 -0.3633 -1.0253 -0.0709 29 1 1.5634 1.9258 -0.8330 30 1 1.7324 1.8608 0.9375 31 1 3.7813 0.8569 -1.0907 32 1 3.9097 2.3514 -0.1317 33 1 5.1998 0.4715 0.8904 34 1 3.8887 1.0355 1.9559 35 1 3.7814 -1.3835 0.0952 36 1 3.9105 -1.4304 1.8702 37 1 1.7853 -2.5455 3.0601 38 1 -0.2333 -4.1840 1.9563 39 1 1.3493 -4.8618 1.5044 40 1 -0.6343 -6.3274 3.0907 41 1 0.8786 -7.0807 3.7719 42 1 0.6021 -5.9139 5.9129 43 1 -1.1557 -5.9095 5.4605 44 1 -2.4036 -3.8594 7.3752 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001038417212.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:04:28 Heat of formation + Delta-G solvation = 0.234685 kcal Electronic energy + Delta-G solvation = -23191.259116 eV Core-core repulsion = 19951.320745 eV Total energy + Delta-G solvation = -3239.938371 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.184 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -41.41512 -40.02645 -38.80889 -35.58084 -34.40845 -34.23437 -32.32667 -29.97923 -29.19911 -27.71947 -25.40717 -25.07045 -23.93406 -23.26543 -21.58738 -20.99051 -20.62315 -18.83197 -18.01440 -17.35778 -17.11005 -16.39969 -16.34235 -15.79117 -15.75462 -15.58797 -15.29969 -14.91965 -14.82562 -14.20723 -13.99136 -13.91629 -13.58504 -13.38977 -13.04211 -12.99497 -12.74819 -12.70971 -12.56583 -12.36881 -12.30890 -11.88150 -11.84189 -11.63584 -11.62559 -11.35332 -11.12884 -10.87654 -10.52485 -9.99053 -9.35810 -8.89807 -7.88915 -5.20195 1.40930 1.42263 1.50507 1.60568 2.12420 2.44832 2.91437 3.33479 3.42248 3.66253 3.80105 3.93439 3.97397 4.05313 4.13597 4.16057 4.30095 4.34601 4.40785 4.48166 4.56628 4.64365 4.69258 4.74235 4.81945 4.88184 4.95348 5.01784 5.03598 5.05311 5.10041 5.16851 5.22183 5.32201 5.44468 5.47844 5.58718 5.74322 5.88008 5.96423 6.08204 6.58852 6.92798 7.26243 7.63004 8.63171 9.28961 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.016473 B = 0.005244 C = 0.004463 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1699.323354 B = 5338.531363 C = 6271.934401 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.018 3.982 2 N -0.532 5.532 3 C 0.051 3.949 4 C -0.114 4.114 5 C -0.116 4.116 6 C -0.102 4.102 7 C 0.071 3.929 8 H 0.061 0.939 9 C 0.512 3.488 10 O -0.567 6.567 11 N -0.711 5.711 12 C 0.133 3.867 13 C 0.134 3.866 14 H 0.071 0.929 15 C -0.135 4.135 16 C 0.143 3.857 17 N -0.629 5.629 18 C -0.204 4.204 19 H 0.085 0.915 20 C -0.071 4.071 21 N -0.953 5.953 22 Si 0.966 3.034 23 H -0.267 1.267 24 H -0.299 1.299 25 H -0.293 1.293 26 H 0.084 0.916 27 H 0.018 0.982 28 H 0.059 0.941 29 H 0.087 0.913 30 H 0.034 0.966 31 H 0.067 0.933 32 H 0.090 0.910 33 H 0.087 0.913 34 H 0.066 0.934 35 H 0.067 0.933 36 H 0.082 0.918 37 H 0.406 0.594 38 H 0.039 0.961 39 H 0.078 0.922 40 H 0.077 0.923 41 H 0.100 0.900 42 H 0.024 0.976 43 H 0.035 0.965 44 H 0.245 0.755 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.710 7.575 -11.109 18.502 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 N -0.258 5.258 3 C -0.076 4.076 4 C -0.152 4.152 5 C -0.154 4.154 6 C -0.140 4.140 7 C -0.041 4.041 8 H 0.079 0.921 9 C 0.299 3.701 10 O -0.446 6.446 11 N -0.362 5.362 12 C 0.008 3.992 13 C 0.028 3.972 14 H 0.088 0.912 15 C -0.173 4.173 16 C 0.017 3.983 17 N -0.355 5.355 18 C -0.332 4.332 19 H 0.103 0.897 20 C -0.263 4.263 21 N -0.603 5.603 22 Si 0.795 3.205 23 H -0.191 1.191 24 H -0.226 1.226 25 H -0.220 1.220 26 H 0.103 0.897 27 H 0.037 0.963 28 H 0.078 0.922 29 H 0.106 0.894 30 H 0.053 0.947 31 H 0.086 0.914 32 H 0.109 0.891 33 H 0.106 0.894 34 H 0.085 0.915 35 H 0.085 0.915 36 H 0.101 0.899 37 H 0.241 0.759 38 H 0.057 0.943 39 H 0.096 0.904 40 H 0.096 0.904 41 H 0.119 0.881 42 H 0.041 0.959 43 H 0.053 0.947 44 H 0.054 0.946 Dipole moment (debyes) X Y Z Total from point charges 12.329 7.281 -12.104 18.749 hybrid contribution -1.172 1.134 1.872 2.483 sum 11.157 8.415 -10.232 17.320 Atomic orbital electron populations 1.22492 0.87353 1.02659 1.00526 1.61707 1.07816 1.14528 1.41701 1.22286 0.96918 0.87245 1.01129 1.21617 0.93048 1.01399 0.99134 1.21594 1.01015 0.93730 0.99048 1.21549 0.89723 0.99586 1.03132 1.21645 0.97876 0.90643 0.93908 0.92094 1.20878 0.78608 0.87773 0.82882 1.90620 1.47231 1.73562 1.33181 1.45979 1.60434 1.17111 1.12678 1.21566 0.97236 0.82563 0.97849 1.22568 0.94582 0.92016 0.88079 0.91158 1.23479 1.00257 0.96207 0.97390 1.22046 0.98549 0.83944 0.93763 1.45989 1.48814 1.04454 1.36255 1.19201 1.18147 0.85037 1.10826 0.89704 1.25508 1.01470 1.00319 0.99037 1.70014 1.37696 1.29630 1.22954 0.85187 0.77535 0.80220 0.77523 1.19113 1.22618 1.21968 0.89706 0.96336 0.92217 0.89428 0.94747 0.91437 0.89128 0.89402 0.91484 0.91468 0.89908 0.75869 0.94290 0.90401 0.90411 0.88146 0.95861 0.94662 0.94591 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.51 9.10 127.69 1.16 1.68 16 2 N -0.53 -14.32 4.51 -901.59 -4.06 -18.38 16 3 C 0.05 1.02 5.46 86.33 0.47 1.49 16 4 C -0.11 -1.79 6.09 30.65 0.19 -1.60 16 5 C -0.12 -1.82 6.00 30.67 0.18 -1.64 16 6 C -0.10 -2.12 5.36 30.65 0.16 -1.96 16 7 C 0.07 1.92 2.24 44.19 0.10 2.02 16 8 H 0.06 1.64 8.14 -2.38 -0.02 1.62 16 9 C 0.51 17.22 6.26 87.66 0.55 17.77 16 10 O -0.57 -22.93 14.52 -3.04 -0.04 -22.97 16 11 N -0.71 -23.38 5.33 -463.05 -2.47 -25.85 16 12 C 0.13 4.64 5.52 86.38 0.48 5.11 16 13 C 0.13 4.84 4.10 41.79 0.17 5.01 16 14 H 0.07 2.33 8.14 -2.39 -0.02 2.31 16 15 C -0.13 -4.60 8.03 30.93 0.25 -4.35 16 16 C 0.14 6.48 7.39 83.17 0.61 7.09 16 17 N -0.63 -30.11 3.65 -714.00 -2.61 -32.71 16 18 C -0.20 -10.81 10.55 84.03 0.89 -9.92 16 19 H 0.09 4.29 7.50 -2.91 -0.02 4.26 16 20 C -0.07 -3.96 5.50 84.86 0.47 -3.49 16 21 N -0.95 -57.16 11.51 21.65 0.25 -56.91 16 22 Si 0.97 45.52 29.55 68.60 2.03 47.55 16 23 H -0.27 -11.74 7.11 99.48 0.71 -11.03 16 24 H -0.30 -14.37 7.11 99.48 0.71 -13.66 16 25 H -0.29 -13.75 7.11 99.48 0.71 -13.04 16 26 H 0.08 2.07 8.10 -2.39 -0.02 2.05 16 27 H 0.02 0.53 8.14 -2.39 -0.02 0.51 16 28 H 0.06 2.12 5.62 -2.38 -0.01 2.10 16 29 H 0.09 1.54 8.09 -2.39 -0.02 1.52 16 30 H 0.03 0.68 8.14 -2.39 -0.02 0.66 16 31 H 0.07 1.14 8.14 -2.39 -0.02 1.12 16 32 H 0.09 1.02 8.14 -2.39 -0.02 1.00 16 33 H 0.09 1.08 8.14 -2.39 -0.02 1.06 16 34 H 0.07 1.02 8.14 -2.39 -0.02 1.00 16 35 H 0.07 1.55 8.14 -2.39 -0.02 1.53 16 36 H 0.08 1.54 8.14 -2.39 -0.02 1.52 16 37 H 0.41 12.59 8.37 -92.71 -0.78 11.81 16 38 H 0.04 1.61 8.14 -2.39 -0.02 1.59 16 39 H 0.08 2.45 8.14 -2.39 -0.02 2.43 16 40 H 0.08 2.71 8.12 -2.39 -0.02 2.69 16 41 H 0.10 2.65 8.14 -2.38 -0.02 2.63 16 42 H 0.02 1.06 8.14 -2.39 -0.02 1.04 16 43 H 0.03 1.84 7.12 -2.39 -0.02 1.83 16 44 H 0.24 14.40 8.31 -92.71 -0.77 13.63 16 Total: -1.00 -68.88 347.24 -1.04 -69.92 By element: Atomic # 1 Polarization: 21.96 SS G_CDS: 0.19 Total: 22.15 kcal Atomic # 6 Polarization: 11.53 SS G_CDS: 5.68 Total: 17.21 kcal Atomic # 7 Polarization: -124.96 SS G_CDS: -8.89 Total: -133.86 kcal Atomic # 8 Polarization: -22.93 SS G_CDS: -0.04 Total: -22.97 kcal Atomic # 14 Polarization: 45.52 SS G_CDS: 2.03 Total: 47.55 kcal Total: -68.88 -1.04 -69.92 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001038417212.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.151 kcal (2) G-P(sol) polarization free energy of solvation -68.880 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.271 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.036 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.916 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.235 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds