Wall clock time and date at job start Tue Mar 31 2020 06:04:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46907 * 1 3 3 C 1.46848 * 110.99958 * 2 1 4 4 C 1.53032 * 109.52348 * 174.16258 * 3 2 1 5 5 C 1.53123 * 109.27911 * 59.17573 * 4 3 2 6 6 C 1.53123 * 109.16001 * 302.34817 * 5 4 3 7 7 C 1.46842 * 110.99676 * 235.78938 * 2 1 3 8 8 H 1.09002 * 109.46766 * 65.82407 * 7 2 1 9 9 C 1.50706 * 109.46534 * 305.85447 * 7 2 1 10 10 O 1.21285 * 119.99541 * 339.94639 * 9 7 2 11 11 N 1.34770 * 120.00086 * 159.94930 * 9 7 2 12 12 C 1.46498 * 119.99828 * 180.02562 * 11 9 7 13 13 C 1.52999 * 109.47305 * 179.97438 * 12 11 9 14 14 H 1.09001 * 112.73642 * 304.66713 * 13 12 11 15 15 C 1.53494 * 113.46978 * 173.91873 * 13 12 11 16 16 C 1.53617 * 83.30627 * 219.16848 * 15 13 12 17 17 N 1.47066 * 88.00344 * 26.02631 * 16 15 13 18 18 C 1.36931 * 136.05898 * 152.96877 * 17 16 15 19 19 H 1.08001 * 120.00354 * 179.97438 * 18 17 16 20 20 C 1.38810 * 119.99949 * 359.94628 * 18 17 16 21 21 N 1.31621 * 120.00089 * 359.97438 * 20 18 17 22 22 Si 1.86810 * 119.99930 * 180.02562 * 20 18 17 23 23 H 1.48498 * 109.46901 * 359.97438 * 22 20 18 24 24 H 1.48497 * 109.47121 * 119.99752 * 22 20 18 25 25 H 1.48494 * 109.46646 * 239.99604 * 22 20 18 26 26 H 1.08999 * 109.47230 * 184.21551 * 1 2 3 27 27 H 1.09004 * 109.46916 * 304.21176 * 1 2 3 28 28 H 1.08994 * 109.47211 * 64.20929 * 1 2 3 29 29 H 1.09003 * 109.46014 * 294.17985 * 3 2 1 30 30 H 1.08991 * 109.46260 * 54.15359 * 3 2 1 31 31 H 1.08996 * 109.50421 * 179.11872 * 4 3 2 32 32 H 1.08998 * 109.50355 * 299.19707 * 4 3 2 33 33 H 1.09000 * 109.52311 * 182.44010 * 5 4 3 34 34 H 1.09007 * 109.52076 * 62.25123 * 5 4 3 35 35 H 1.09000 * 109.50367 * 297.70910 * 6 5 4 36 36 H 1.09006 * 109.50264 * 177.59249 * 6 5 4 37 37 H 0.97003 * 120.00086 * 359.97438 * 11 9 7 38 38 H 1.09001 * 109.47196 * 299.99770 * 12 11 9 39 39 H 1.08991 * 109.47573 * 59.99821 * 12 11 9 40 40 H 1.08998 * 114.21095 * 332.74378 * 15 13 12 41 41 H 1.09007 * 114.20333 * 105.56667 * 15 13 12 42 42 H 1.08997 * 113.41594 * 271.24184 * 16 15 13 43 43 H 1.09002 * 113.55826 * 140.82706 * 16 15 13 44 44 H 0.96996 * 119.99756 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4691 0.0000 0.0000 3 6 1.9953 1.3710 0.0000 4 6 3.5182 1.3342 0.1467 5 6 4.1188 0.5369 -1.0144 6 6 3.5181 -0.8715 -1.0208 7 6 1.9952 -0.7708 -1.1337 8 1 1.7325 -0.2709 -2.0660 9 6 1.3982 -2.1545 -1.1206 10 8 0.9173 -2.5977 -0.0991 11 7 1.3986 -2.8993 -2.2437 12 6 0.8177 -4.2441 -2.2310 13 6 0.9456 -4.8681 -3.6221 14 1 0.5031 -4.2501 -4.4034 15 6 0.4991 -6.3356 -3.6772 16 6 1.7062 -6.4804 -4.6162 17 7 2.3083 -5.3234 -3.9368 18 6 3.5785 -4.8692 -3.7015 19 1 3.7309 -3.9514 -3.1531 20 6 4.6702 -5.5889 -4.1673 21 7 4.4845 -6.7080 -4.8347 22 14 6.4031 -4.9697 -3.8456 23 1 6.3405 -3.6993 -3.0793 24 1 7.1539 -5.9840 -3.0629 25 1 7.0923 -4.7334 -5.1396 26 1 -0.3633 -1.0249 0.0755 27 1 -0.3633 0.5778 0.8499 28 1 -0.3633 0.4471 -0.9252 29 1 1.7324 1.8608 -0.9376 30 1 1.5636 1.9256 0.8330 31 1 3.9099 2.3512 0.1309 32 1 3.7814 0.8574 1.0909 33 1 5.1998 0.4714 -0.8906 34 1 3.8887 1.0354 -1.9561 35 1 3.7814 -1.3837 -0.0954 36 1 3.9098 -1.4304 -1.8708 37 1 1.7829 -2.5446 -3.0608 38 1 1.3469 -4.8617 -1.5054 39 1 -0.2353 -4.1825 -1.9563 40 1 0.6011 -6.8697 -2.7325 41 1 -0.4653 -6.4915 -4.1609 42 1 1.4660 -6.2927 -5.6627 43 1 2.2623 -7.4066 -4.4712 44 1 5.2475 -7.2110 -5.1598 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001038417216.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:04:31 Heat of formation + Delta-G solvation = 22.215135 kcal Electronic energy + Delta-G solvation = -23226.074970 eV Core-core repulsion = 19987.089743 eV Total energy + Delta-G solvation = -3238.985227 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.184 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -40.17863 -38.47325 -37.54024 -34.17439 -33.37481 -32.24723 -31.27917 -28.11448 -27.72315 -26.65154 -23.92559 -23.49449 -22.92640 -21.80060 -20.32316 -19.71612 -19.15802 -17.25785 -16.46933 -16.07301 -15.44037 -15.24769 -14.83925 -14.64864 -14.43635 -14.19857 -13.94476 -13.48098 -13.26521 -13.16929 -12.93714 -12.62251 -12.21419 -11.84644 -11.66200 -11.54550 -11.38562 -11.13261 -10.99989 -10.92367 -10.80114 -10.73878 -10.56626 -10.46326 -9.97560 -9.84383 -9.48221 -9.10825 -8.83935 -8.54797 -8.31351 -6.92181 -5.79294 -3.11862 2.94448 3.34996 3.37314 3.40736 3.43835 3.98691 4.40704 4.70694 4.75283 4.84994 5.07102 5.09987 5.17071 5.23369 5.36638 5.39213 5.44952 5.48396 5.55105 5.58500 5.65946 5.73219 5.82850 5.90229 5.90547 6.03848 6.06931 6.11107 6.11921 6.31326 6.32619 6.39133 6.58207 6.71422 6.88289 6.95802 7.04074 7.20925 7.37497 7.55884 7.93267 7.95159 8.61049 9.00490 9.67892 10.60736 11.38014 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.016465 B = 0.005577 C = 0.004317 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1700.185845 B = 5019.577491 C = 6484.591028 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.016 3.984 2 N -0.520 5.520 3 C 0.057 3.943 4 C -0.119 4.119 5 C -0.119 4.119 6 C -0.110 4.110 7 C 0.072 3.928 8 H 0.057 0.943 9 C 0.514 3.486 10 O -0.533 6.533 11 N -0.714 5.714 12 C 0.123 3.877 13 C 0.127 3.873 14 H 0.047 0.953 15 C -0.161 4.161 16 C 0.151 3.849 17 N -0.601 5.601 18 C -0.213 4.213 19 H 0.081 0.919 20 C -0.007 4.007 21 N -0.918 5.918 22 Si 0.907 3.093 23 H -0.279 1.279 24 H -0.290 1.290 25 H -0.291 1.291 26 H 0.090 0.910 27 H 0.066 0.934 28 H 0.017 0.983 29 H 0.031 0.969 30 H 0.076 0.924 31 H 0.066 0.934 32 H 0.072 0.928 33 H 0.069 0.931 34 H 0.060 0.940 35 H 0.078 0.922 36 H 0.078 0.922 37 H 0.401 0.599 38 H 0.071 0.929 39 H 0.058 0.942 40 H 0.079 0.921 41 H 0.058 0.942 42 H 0.024 0.976 43 H 0.072 0.928 44 H 0.253 0.747 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.387 13.793 5.222 16.072 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 N -0.245 5.245 3 C -0.071 4.071 4 C -0.156 4.156 5 C -0.157 4.157 6 C -0.148 4.148 7 C -0.040 4.040 8 H 0.075 0.925 9 C 0.299 3.701 10 O -0.410 6.410 11 N -0.364 5.364 12 C -0.002 4.002 13 C 0.019 3.981 14 H 0.064 0.936 15 C -0.200 4.200 16 C 0.026 3.974 17 N -0.327 5.327 18 C -0.340 4.340 19 H 0.099 0.901 20 C -0.204 4.204 21 N -0.565 5.565 22 Si 0.738 3.262 23 H -0.204 1.204 24 H -0.217 1.217 25 H -0.218 1.218 26 H 0.108 0.892 27 H 0.085 0.915 28 H 0.036 0.964 29 H 0.049 0.951 30 H 0.094 0.906 31 H 0.085 0.915 32 H 0.091 0.909 33 H 0.088 0.912 34 H 0.079 0.921 35 H 0.097 0.903 36 H 0.097 0.903 37 H 0.236 0.764 38 H 0.089 0.911 39 H 0.076 0.924 40 H 0.098 0.902 41 H 0.076 0.924 42 H 0.042 0.958 43 H 0.090 0.910 44 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges -6.202 13.224 6.373 15.936 hybrid contribution 0.920 0.910 -1.217 1.776 sum -5.282 14.134 5.156 15.945 Atomic orbital electron populations 1.22579 0.86780 1.04266 0.99594 1.61629 1.08115 1.12734 1.42009 1.22127 0.95785 0.88816 1.00358 1.21617 0.94333 1.00027 0.99659 1.21577 1.00315 0.95309 0.98474 1.21568 0.91414 0.97835 1.03982 1.21587 0.96671 0.92486 0.93222 0.92506 1.20311 0.79328 0.86903 0.83589 1.90637 1.45941 1.72776 1.31626 1.45996 1.60763 1.17079 1.12569 1.21786 0.96952 0.81973 0.99449 1.22411 0.88369 0.94396 0.92888 0.93560 1.23678 0.98466 0.96351 1.01531 1.22050 0.88824 0.93728 0.92837 1.45677 0.98702 1.25292 1.63011 1.18887 0.79936 1.05749 1.29407 0.90139 1.24775 0.97651 0.97503 1.00481 1.69835 1.29147 1.15980 1.41537 0.86120 0.84778 0.77997 0.77337 1.20398 1.21699 1.21811 0.89163 0.91525 0.96401 0.95069 0.90552 0.91540 0.90880 0.91220 0.92078 0.90297 0.90319 0.76443 0.91075 0.92417 0.90193 0.92361 0.95787 0.90961 0.93731 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.20 9.10 60.07 0.55 0.75 16 2 N -0.52 -7.05 4.51 -236.33 -1.07 -8.12 16 3 C 0.06 0.61 5.46 -3.84 -0.02 0.59 16 4 C -0.12 -1.19 6.09 -26.65 -0.16 -1.35 16 5 C -0.12 -1.30 6.00 -26.60 -0.16 -1.46 16 6 C -0.11 -1.51 5.36 -26.65 -0.14 -1.65 16 7 C 0.07 1.02 2.24 -68.87 -0.15 0.87 16 8 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 9 C 0.51 8.78 6.26 -10.99 -0.07 8.71 16 10 O -0.53 -10.74 14.53 5.55 0.08 -10.65 16 11 N -0.71 -12.07 5.41 -60.30 -0.33 -12.40 16 12 C 0.12 2.22 5.52 -4.04 -0.02 2.20 16 13 C 0.13 2.42 4.10 -72.39 -0.30 2.12 16 14 H 0.05 0.85 8.14 -51.93 -0.42 0.43 16 15 C -0.16 -2.91 8.04 -26.16 -0.21 -3.12 16 16 C 0.15 3.43 7.40 -8.44 -0.06 3.37 16 17 N -0.60 -14.44 3.65 -176.78 -0.65 -15.09 16 18 C -0.21 -5.61 10.55 -15.06 -0.16 -5.76 16 19 H 0.08 2.03 7.68 -52.49 -0.40 1.63 16 20 C -0.01 -0.20 5.50 -17.43 -0.10 -0.30 16 21 N -0.92 -26.76 11.51 55.49 0.64 -26.12 16 22 Si 0.91 21.72 29.55 -169.99 -5.02 16.70 16 23 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 24 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 25 H -0.29 -7.02 7.11 56.52 0.40 -6.61 16 26 H 0.09 1.38 5.63 -51.93 -0.29 1.08 16 27 H 0.07 0.74 8.09 -51.93 -0.42 0.32 16 28 H 0.02 0.20 8.14 -51.93 -0.42 -0.22 16 29 H 0.03 0.31 8.14 -51.93 -0.42 -0.11 16 30 H 0.08 0.72 8.08 -51.93 -0.42 0.30 16 31 H 0.07 0.54 8.14 -51.93 -0.42 0.11 16 32 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 33 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 34 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 35 H 0.08 1.21 8.14 -51.93 -0.42 0.78 16 36 H 0.08 1.14 8.14 -51.93 -0.42 0.71 16 37 H 0.40 6.47 8.47 -40.82 -0.35 6.13 16 38 H 0.07 1.48 8.14 -51.93 -0.42 1.06 16 39 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 40 H 0.08 1.45 8.12 -51.93 -0.42 1.03 16 41 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 42 H 0.02 0.55 8.14 -51.93 -0.42 0.13 16 43 H 0.07 1.84 7.12 -51.93 -0.37 1.47 16 44 H 0.25 7.17 8.31 -40.82 -0.34 6.83 16 LS Contribution 347.60 15.07 5.24 5.24 Total: -1.00 -31.10 347.60 -9.84 -40.94 By element: Atomic # 1 Polarization: 12.28 SS G_CDS: -7.73 Total: 4.56 kcal Atomic # 6 Polarization: 5.96 SS G_CDS: -1.01 Total: 4.95 kcal Atomic # 7 Polarization: -60.32 SS G_CDS: -1.40 Total: -61.72 kcal Atomic # 8 Polarization: -10.74 SS G_CDS: 0.08 Total: -10.65 kcal Atomic # 14 Polarization: 21.72 SS G_CDS: -5.02 Total: 16.70 kcal Total LS contribution 5.24 Total: 5.24 kcal Total: -31.10 -9.84 -40.94 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001038417216.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.154 kcal (2) G-P(sol) polarization free energy of solvation -31.099 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.055 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.839 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.939 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.215 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds