Wall clock time and date at job start Tue Mar 31 2020 06:04:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46907 * 1 3 3 C 1.46848 * 110.99958 * 2 1 4 4 C 1.53032 * 109.52348 * 174.16258 * 3 2 1 5 5 C 1.53123 * 109.27911 * 59.17573 * 4 3 2 6 6 C 1.53123 * 109.16001 * 302.34817 * 5 4 3 7 7 C 1.46842 * 110.99676 * 235.78938 * 2 1 3 8 8 H 1.09002 * 109.46766 * 65.82407 * 7 2 1 9 9 C 1.50706 * 109.46534 * 305.85447 * 7 2 1 10 10 O 1.21285 * 119.99541 * 339.94639 * 9 7 2 11 11 N 1.34770 * 120.00086 * 159.94930 * 9 7 2 12 12 C 1.46498 * 119.99828 * 180.02562 * 11 9 7 13 13 C 1.52999 * 109.47305 * 179.97438 * 12 11 9 14 14 H 1.09001 * 112.73642 * 304.66713 * 13 12 11 15 15 C 1.53494 * 113.46978 * 173.91873 * 13 12 11 16 16 C 1.53617 * 83.30627 * 219.16848 * 15 13 12 17 17 N 1.47066 * 88.00344 * 26.02631 * 16 15 13 18 18 C 1.36931 * 136.05898 * 152.96877 * 17 16 15 19 19 H 1.08001 * 120.00354 * 179.97438 * 18 17 16 20 20 C 1.38810 * 119.99949 * 359.94628 * 18 17 16 21 21 N 1.31621 * 120.00089 * 359.97438 * 20 18 17 22 22 Si 1.86810 * 119.99930 * 180.02562 * 20 18 17 23 23 H 1.48498 * 109.46901 * 359.97438 * 22 20 18 24 24 H 1.48497 * 109.47121 * 119.99752 * 22 20 18 25 25 H 1.48494 * 109.46646 * 239.99604 * 22 20 18 26 26 H 1.08999 * 109.47230 * 184.21551 * 1 2 3 27 27 H 1.09004 * 109.46916 * 304.21176 * 1 2 3 28 28 H 1.08994 * 109.47211 * 64.20929 * 1 2 3 29 29 H 1.09003 * 109.46014 * 294.17985 * 3 2 1 30 30 H 1.08991 * 109.46260 * 54.15359 * 3 2 1 31 31 H 1.08996 * 109.50421 * 179.11872 * 4 3 2 32 32 H 1.08998 * 109.50355 * 299.19707 * 4 3 2 33 33 H 1.09000 * 109.52311 * 182.44010 * 5 4 3 34 34 H 1.09007 * 109.52076 * 62.25123 * 5 4 3 35 35 H 1.09000 * 109.50367 * 297.70910 * 6 5 4 36 36 H 1.09006 * 109.50264 * 177.59249 * 6 5 4 37 37 H 0.97003 * 120.00086 * 359.97438 * 11 9 7 38 38 H 1.09001 * 109.47196 * 299.99770 * 12 11 9 39 39 H 1.08991 * 109.47573 * 59.99821 * 12 11 9 40 40 H 1.08998 * 114.21095 * 332.74378 * 15 13 12 41 41 H 1.09007 * 114.20333 * 105.56667 * 15 13 12 42 42 H 1.08997 * 113.41594 * 271.24184 * 16 15 13 43 43 H 1.09002 * 113.55826 * 140.82706 * 16 15 13 44 44 H 0.96996 * 119.99756 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4691 0.0000 0.0000 3 6 1.9953 1.3710 0.0000 4 6 3.5182 1.3342 0.1467 5 6 4.1188 0.5369 -1.0144 6 6 3.5181 -0.8715 -1.0208 7 6 1.9952 -0.7708 -1.1337 8 1 1.7325 -0.2709 -2.0660 9 6 1.3982 -2.1545 -1.1206 10 8 0.9173 -2.5977 -0.0991 11 7 1.3986 -2.8993 -2.2437 12 6 0.8177 -4.2441 -2.2310 13 6 0.9456 -4.8681 -3.6221 14 1 0.5031 -4.2501 -4.4034 15 6 0.4991 -6.3356 -3.6772 16 6 1.7062 -6.4804 -4.6162 17 7 2.3083 -5.3234 -3.9368 18 6 3.5785 -4.8692 -3.7015 19 1 3.7309 -3.9514 -3.1531 20 6 4.6702 -5.5889 -4.1673 21 7 4.4845 -6.7080 -4.8347 22 14 6.4031 -4.9697 -3.8456 23 1 6.3405 -3.6993 -3.0793 24 1 7.1539 -5.9840 -3.0629 25 1 7.0923 -4.7334 -5.1396 26 1 -0.3633 -1.0249 0.0755 27 1 -0.3633 0.5778 0.8499 28 1 -0.3633 0.4471 -0.9252 29 1 1.7324 1.8608 -0.9376 30 1 1.5636 1.9256 0.8330 31 1 3.9099 2.3512 0.1309 32 1 3.7814 0.8574 1.0909 33 1 5.1998 0.4714 -0.8906 34 1 3.8887 1.0354 -1.9561 35 1 3.7814 -1.3837 -0.0954 36 1 3.9098 -1.4304 -1.8708 37 1 1.7829 -2.5446 -3.0608 38 1 1.3469 -4.8617 -1.5054 39 1 -0.2353 -4.1825 -1.9563 40 1 0.6011 -6.8697 -2.7325 41 1 -0.4653 -6.4915 -4.1609 42 1 1.4660 -6.2927 -5.6627 43 1 2.2623 -7.4066 -4.4712 44 1 5.2475 -7.2110 -5.1598 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001038417216.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:04:31 Heat of formation + Delta-G solvation = 0.474559 kcal Electronic energy + Delta-G solvation = -23227.017713 eV Core-core repulsion = 19987.089743 eV Total energy + Delta-G solvation = -3239.927969 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.184 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -41.41313 -40.01326 -38.80738 -35.57905 -34.41525 -34.21014 -32.32473 -29.95946 -29.20197 -27.68032 -25.39157 -25.07324 -23.92932 -23.26166 -21.59213 -20.99967 -20.60759 -18.81624 -18.01711 -17.34643 -17.09415 -16.48043 -16.18730 -15.92838 -15.62809 -15.54899 -15.30235 -14.98808 -14.73362 -14.31082 -14.00133 -13.80998 -13.58551 -13.36617 -13.01792 -12.98302 -12.70484 -12.69473 -12.56924 -12.37474 -12.28451 -11.88374 -11.81999 -11.66351 -11.61094 -11.35061 -11.14692 -10.85786 -10.51668 -9.99096 -9.29135 -8.88469 -7.86580 -5.18183 1.44030 1.45791 1.54268 1.60746 2.11817 2.47663 2.94638 3.35703 3.43172 3.65964 3.80746 3.92084 3.95258 4.04695 4.13120 4.16752 4.28059 4.34733 4.46275 4.51829 4.57775 4.63669 4.69619 4.73134 4.79268 4.88303 4.95506 5.02094 5.05550 5.05956 5.10362 5.15369 5.21484 5.34132 5.42421 5.48360 5.60187 5.74556 5.92574 5.97920 6.13686 6.59196 6.94867 7.26530 7.65341 8.64868 9.31340 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.016465 B = 0.005577 C = 0.004317 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1700.185845 B = 5019.577491 C = 6484.591028 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.020 3.980 2 N -0.541 5.541 3 C 0.056 3.944 4 C -0.116 4.116 5 C -0.115 4.115 6 C -0.109 4.109 7 C 0.079 3.921 8 H 0.076 0.924 9 C 0.511 3.489 10 O -0.567 6.567 11 N -0.711 5.711 12 C 0.133 3.867 13 C 0.134 3.866 14 H 0.070 0.930 15 C -0.135 4.135 16 C 0.142 3.858 17 N -0.629 5.629 18 C -0.203 4.203 19 H 0.088 0.912 20 C -0.072 4.072 21 N -0.955 5.955 22 Si 0.965 3.035 23 H -0.261 1.261 24 H -0.301 1.301 25 H -0.294 1.294 26 H 0.061 0.939 27 H 0.082 0.918 28 H 0.031 0.969 29 H 0.044 0.956 30 H 0.090 0.910 31 H 0.093 0.907 32 H 0.060 0.940 33 H 0.075 0.925 34 H 0.075 0.925 35 H 0.055 0.945 36 H 0.067 0.933 37 H 0.406 0.594 38 H 0.039 0.961 39 H 0.077 0.923 40 H 0.077 0.923 41 H 0.100 0.900 42 H 0.023 0.977 43 H 0.035 0.965 44 H 0.244 0.756 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.241 16.494 5.390 18.803 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 N -0.266 5.266 3 C -0.071 4.071 4 C -0.153 4.153 5 C -0.153 4.153 6 C -0.148 4.148 7 C -0.033 4.033 8 H 0.094 0.906 9 C 0.298 3.702 10 O -0.446 6.446 11 N -0.362 5.362 12 C 0.008 3.992 13 C 0.028 3.972 14 H 0.087 0.913 15 C -0.174 4.174 16 C 0.017 3.983 17 N -0.355 5.355 18 C -0.332 4.332 19 H 0.106 0.894 20 C -0.264 4.264 21 N -0.605 5.605 22 Si 0.794 3.206 23 H -0.185 1.185 24 H -0.228 1.228 25 H -0.221 1.221 26 H 0.079 0.921 27 H 0.101 0.899 28 H 0.049 0.951 29 H 0.062 0.938 30 H 0.108 0.892 31 H 0.111 0.889 32 H 0.079 0.921 33 H 0.094 0.906 34 H 0.093 0.907 35 H 0.074 0.926 36 H 0.086 0.914 37 H 0.241 0.759 38 H 0.057 0.943 39 H 0.096 0.904 40 H 0.096 0.904 41 H 0.118 0.882 42 H 0.041 0.959 43 H 0.053 0.947 44 H 0.053 0.947 Dipole moment (debyes) X Y Z Total from point charges -7.085 15.968 6.546 18.655 hybrid contribution 1.097 0.072 -1.236 1.654 sum -5.988 16.040 5.310 17.926 Atomic orbital electron populations 1.22495 0.86516 1.02806 1.00986 1.61622 1.08590 1.14531 1.41895 1.22240 0.96050 0.87228 1.01596 1.21622 0.94004 1.01179 0.98514 1.21581 1.00545 0.93480 0.99671 1.21552 0.91411 0.99588 1.02217 1.21531 0.96490 0.90742 0.94503 0.90643 1.20904 0.78523 0.87959 0.82826 1.90622 1.47424 1.73782 1.32786 1.45982 1.60656 1.16613 1.12952 1.21561 0.97650 0.82125 0.97879 1.22553 0.85589 0.95448 0.93648 0.91292 1.23501 0.98389 0.95189 1.00300 1.22065 0.90561 0.91913 0.93784 1.45996 0.99772 1.26402 1.63286 1.19248 0.81222 1.05202 1.27495 0.89387 1.25526 1.01130 0.98156 1.01610 1.70017 1.29358 1.17458 1.43647 0.85193 0.80638 0.77846 0.76910 1.18456 1.22837 1.22094 0.92057 0.89943 0.95091 0.93798 0.89176 0.88890 0.92127 0.90607 0.90675 0.92647 0.91404 0.75855 0.94264 0.90448 0.90398 0.88193 0.95928 0.94653 0.94659 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.47 9.10 127.69 1.16 1.63 16 2 N -0.54 -13.65 4.51 -901.60 -4.07 -17.71 16 3 C 0.06 1.01 5.46 86.32 0.47 1.49 16 4 C -0.12 -1.97 6.09 30.65 0.19 -1.78 16 5 C -0.12 -2.22 6.00 30.68 0.18 -2.04 16 6 C -0.11 -2.87 5.36 30.65 0.16 -2.71 16 7 C 0.08 2.11 2.24 44.19 0.10 2.21 16 8 H 0.08 1.73 8.14 -2.39 -0.02 1.71 16 9 C 0.51 17.10 6.26 87.66 0.55 17.65 16 10 O -0.57 -22.88 14.53 -3.05 -0.04 -22.92 16 11 N -0.71 -23.26 5.41 -463.07 -2.50 -25.77 16 12 C 0.13 4.63 5.52 86.38 0.48 5.11 16 13 C 0.13 4.85 4.10 41.79 0.17 5.02 16 14 H 0.07 2.29 8.14 -2.39 -0.02 2.27 16 15 C -0.14 -4.62 8.04 30.97 0.25 -4.37 16 16 C 0.14 6.48 7.40 83.22 0.62 7.10 16 17 N -0.63 -30.07 3.65 -713.22 -2.61 -32.68 16 18 C -0.20 -10.75 10.55 84.03 0.89 -9.86 16 19 H 0.09 4.39 7.68 -2.91 -0.02 4.37 16 20 C -0.07 -4.01 5.50 84.86 0.47 -3.55 16 21 N -0.95 -57.35 11.51 21.65 0.25 -57.10 16 22 Si 0.96 45.26 29.55 68.60 2.03 47.29 16 23 H -0.26 -11.25 7.11 99.48 0.71 -10.55 16 24 H -0.30 -14.49 7.11 99.48 0.71 -13.79 16 25 H -0.29 -13.77 7.11 99.48 0.71 -13.06 16 26 H 0.06 1.83 5.63 -2.39 -0.01 1.81 16 27 H 0.08 1.65 8.09 -2.39 -0.02 1.63 16 28 H 0.03 0.64 8.14 -2.39 -0.02 0.62 16 29 H 0.04 0.71 8.14 -2.39 -0.02 0.69 16 30 H 0.09 1.40 8.08 -2.39 -0.02 1.38 16 31 H 0.09 1.13 8.14 -2.39 -0.02 1.11 16 32 H 0.06 1.19 8.14 -2.39 -0.02 1.17 16 33 H 0.08 1.38 8.14 -2.39 -0.02 1.36 16 34 H 0.07 1.26 8.14 -2.38 -0.02 1.24 16 35 H 0.05 1.69 8.14 -2.39 -0.02 1.67 16 36 H 0.07 1.89 8.14 -2.38 -0.02 1.87 16 37 H 0.41 12.47 8.47 -92.71 -0.79 11.68 16 38 H 0.04 1.63 8.14 -2.39 -0.02 1.61 16 39 H 0.08 2.42 8.14 -2.39 -0.02 2.40 16 40 H 0.08 2.72 8.12 -2.39 -0.02 2.70 16 41 H 0.10 2.65 8.14 -2.38 -0.02 2.63 16 42 H 0.02 1.04 8.14 -2.39 -0.02 1.02 16 43 H 0.03 1.85 7.12 -2.39 -0.02 1.84 16 44 H 0.24 14.40 8.31 -92.71 -0.77 13.63 16 Total: -1.00 -68.90 347.60 -1.08 -69.98 By element: Atomic # 1 Polarization: 22.82 SS G_CDS: 0.18 Total: 23.01 kcal Atomic # 6 Polarization: 10.22 SS G_CDS: 5.68 Total: 15.90 kcal Atomic # 7 Polarization: -124.33 SS G_CDS: -8.93 Total: -133.26 kcal Atomic # 8 Polarization: -22.88 SS G_CDS: -0.04 Total: -22.92 kcal Atomic # 14 Polarization: 45.26 SS G_CDS: 2.03 Total: 47.29 kcal Total: -68.90 -1.08 -69.98 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001038417216.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.458 kcal (2) G-P(sol) polarization free energy of solvation -68.905 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.553 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.078 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.983 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.475 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds