Wall clock time and date at job start Tue Mar 31 2020 06:04:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46897 * 1 3 3 C 1.46840 * 110.99916 * 2 1 4 4 C 1.53043 * 109.52653 * 185.83682 * 3 2 1 5 5 C 1.53118 * 109.27588 * 300.82069 * 4 3 2 6 6 C 1.53121 * 109.16292 * 57.65388 * 5 4 3 7 7 C 1.46850 * 110.99787 * 124.20508 * 2 1 3 8 8 H 1.08994 * 109.45560 * 294.17334 * 7 2 1 9 9 C 1.50699 * 109.46247 * 54.14577 * 7 2 1 10 10 O 1.21280 * 120.00056 * 20.05782 * 9 7 2 11 11 N 1.34780 * 120.00180 * 200.04754 * 9 7 2 12 12 C 1.46496 * 120.00122 * 180.02562 * 11 9 7 13 13 C 1.53002 * 109.46969 * 180.02562 * 12 11 9 14 14 H 1.08997 * 113.03780 * 53.25307 * 13 12 11 15 15 C 1.53950 * 113.76615 * 184.99954 * 13 12 11 16 16 C 1.53950 * 86.40547 * 137.96443 * 15 13 12 17 17 N 1.47579 * 86.11621 * 336.33912 * 16 15 13 18 18 C 1.36933 * 134.49130 * 204.65918 * 17 16 15 19 19 H 1.08007 * 119.99961 * 180.02562 * 18 17 16 20 20 C 1.38808 * 120.00260 * 359.97438 * 18 17 16 21 21 N 1.31625 * 119.99852 * 0.02562 * 20 18 17 22 22 Si 1.86807 * 120.00083 * 179.97438 * 20 18 17 23 23 H 1.48503 * 109.46796 * 90.00579 * 22 20 18 24 24 H 1.48504 * 109.47023 * 210.00086 * 22 20 18 25 25 H 1.48494 * 109.47140 * 330.00336 * 22 20 18 26 26 H 1.08994 * 109.47197 * 295.79058 * 1 2 3 27 27 H 1.09001 * 109.47007 * 55.79469 * 1 2 3 28 28 H 1.09008 * 109.47115 * 175.79565 * 1 2 3 29 29 H 1.08999 * 109.46812 * 65.81820 * 3 2 1 30 30 H 1.09001 * 109.45199 * 305.84442 * 3 2 1 31 31 H 1.08990 * 109.50737 * 180.87506 * 4 3 2 32 32 H 1.09010 * 109.50057 * 60.75514 * 4 3 2 33 33 H 1.09000 * 109.52373 * 297.74433 * 5 4 3 34 34 H 1.08997 * 109.52133 * 177.55469 * 5 4 3 35 35 H 1.08994 * 109.50396 * 182.40587 * 6 5 4 36 36 H 1.08996 * 109.54026 * 62.30295 * 6 5 4 37 37 H 0.96997 * 119.99875 * 0.02562 * 11 9 7 38 38 H 1.08997 * 109.47146 * 60.00344 * 12 11 9 39 39 H 1.08996 * 109.46994 * 300.00514 * 12 11 9 40 40 H 1.09002 * 113.74409 * 23.56483 * 15 13 12 41 41 H 1.09006 * 113.74165 * 252.35934 * 15 13 12 42 42 H 1.09003 * 113.76784 * 90.64106 * 16 15 13 43 43 H 1.08999 * 113.76692 * 221.92593 * 16 15 13 44 44 H 0.96997 * 119.99589 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9952 1.3709 0.0000 4 6 3.5181 1.3342 -0.1467 5 6 4.1187 0.5371 1.0145 6 6 3.5181 -0.8714 1.0210 7 6 1.9952 -0.7707 1.1338 8 1 1.7324 -0.2706 2.0659 9 6 1.3981 -2.1543 1.1208 10 8 0.9174 -2.5977 0.0994 11 7 1.3986 -2.8992 2.2441 12 6 0.8187 -4.2444 2.2312 13 6 0.9465 -4.8682 3.6224 14 1 0.5370 -4.2379 4.4117 15 6 0.4768 -6.3326 3.6913 16 6 1.7156 -6.5872 4.5691 17 7 2.2961 -5.3956 3.9203 18 6 3.5716 -4.9553 3.6873 19 1 3.7344 -4.0182 3.1756 20 6 4.6553 -5.7129 4.1096 21 7 4.4569 -6.8547 4.7335 22 14 6.3954 -5.1126 3.7910 23 1 6.8489 -4.2803 4.9342 24 1 7.3013 -6.2793 3.6381 25 1 6.4192 -4.3011 2.5477 26 1 -0.3633 0.4471 0.9252 27 1 -0.3633 0.5777 -0.8499 28 1 -0.3634 -1.0250 -0.0753 29 1 1.7324 1.8609 0.9375 30 1 1.5634 1.9254 -0.8331 31 1 3.9098 2.3512 -0.1310 32 1 3.7814 0.8567 -1.0906 33 1 3.8886 1.0356 1.9561 34 1 5.1997 0.4715 0.8906 35 1 3.9098 -1.4301 1.8709 36 1 3.7813 -1.3842 0.0959 37 1 1.7829 -2.5445 3.0610 38 1 1.3487 -4.8616 1.5058 39 1 -0.2342 -4.1835 1.9560 40 1 0.5056 -6.8484 2.7314 41 1 -0.4686 -6.4660 4.2172 42 1 1.5315 -6.4608 5.6360 43 1 2.2370 -7.5152 4.3346 44 1 5.2143 -7.3842 5.0283 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001038417220.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:04:34 Heat of formation + Delta-G solvation = 18.985192 kcal Electronic energy + Delta-G solvation = -23189.225990 eV Core-core repulsion = 19950.100702 eV Total energy + Delta-G solvation = -3239.125288 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.184 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.18226 -38.32359 -37.47573 -34.18562 -33.38617 -32.20271 -31.28525 -28.07960 -27.71634 -26.66995 -23.96295 -23.36665 -22.94581 -21.92412 -20.33639 -19.71954 -19.04733 -17.26327 -16.44950 -16.08360 -15.44662 -15.24015 -14.84690 -14.65426 -14.44448 -14.20783 -13.93280 -13.49639 -13.27914 -13.17584 -12.94473 -12.63255 -12.21792 -11.83995 -11.65270 -11.45360 -11.38223 -11.10924 -11.02991 -10.92992 -10.76304 -10.72520 -10.55914 -10.46883 -9.99240 -9.75712 -9.56468 -9.18059 -8.80583 -8.56775 -8.32108 -6.90233 -5.77080 -3.09464 2.93434 3.34698 3.37167 3.42316 3.44273 3.97618 4.41714 4.69741 4.74222 4.84156 5.06077 5.06494 5.14611 5.20733 5.36114 5.40052 5.44199 5.47658 5.57528 5.61516 5.65128 5.71948 5.82088 5.89192 5.91099 6.02976 6.05981 6.10120 6.10910 6.30743 6.31985 6.40037 6.61579 6.71725 6.87586 6.95121 7.03376 7.23736 7.40034 7.58411 7.91843 7.97496 8.59922 9.03516 9.70293 10.58714 11.39685 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.016612 B = 0.005490 C = 0.004275 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1685.147786 B = 5099.412550 C = 6547.432243 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.016 3.984 2 N -0.520 5.520 3 C 0.057 3.943 4 C -0.119 4.119 5 C -0.119 4.119 6 C -0.110 4.110 7 C 0.072 3.928 8 H 0.057 0.943 9 C 0.514 3.486 10 O -0.532 6.532 11 N -0.714 5.714 12 C 0.125 3.875 13 C 0.125 3.875 14 H 0.049 0.951 15 C -0.155 4.155 16 C 0.159 3.841 17 N -0.602 5.602 18 C -0.218 4.218 19 H 0.078 0.922 20 C -0.007 4.007 21 N -0.920 5.920 22 Si 0.906 3.094 23 H -0.290 1.290 24 H -0.290 1.290 25 H -0.280 1.280 26 H 0.017 0.983 27 H 0.066 0.934 28 H 0.090 0.910 29 H 0.031 0.969 30 H 0.076 0.924 31 H 0.066 0.934 32 H 0.073 0.927 33 H 0.060 0.940 34 H 0.069 0.931 35 H 0.078 0.922 36 H 0.078 0.922 37 H 0.401 0.599 38 H 0.072 0.928 39 H 0.059 0.941 40 H 0.076 0.924 41 H 0.053 0.947 42 H 0.026 0.974 43 H 0.073 0.927 44 H 0.253 0.747 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.415 14.120 -5.044 16.309 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 N -0.245 5.245 3 C -0.071 4.071 4 C -0.156 4.156 5 C -0.157 4.157 6 C -0.148 4.148 7 C -0.040 4.040 8 H 0.075 0.925 9 C 0.299 3.701 10 O -0.409 6.409 11 N -0.365 5.365 12 C 0.001 3.999 13 C 0.017 3.983 14 H 0.067 0.933 15 C -0.194 4.194 16 C 0.034 3.966 17 N -0.329 5.329 18 C -0.345 4.345 19 H 0.096 0.904 20 C -0.204 4.204 21 N -0.567 5.567 22 Si 0.736 3.264 23 H -0.217 1.217 24 H -0.216 1.216 25 H -0.206 1.206 26 H 0.036 0.964 27 H 0.085 0.915 28 H 0.108 0.892 29 H 0.049 0.951 30 H 0.095 0.905 31 H 0.085 0.915 32 H 0.091 0.909 33 H 0.079 0.921 34 H 0.088 0.912 35 H 0.096 0.904 36 H 0.097 0.903 37 H 0.235 0.765 38 H 0.090 0.910 39 H 0.077 0.923 40 H 0.095 0.905 41 H 0.071 0.929 42 H 0.044 0.956 43 H 0.092 0.908 44 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges -6.253 13.520 -6.202 16.136 hybrid contribution 0.959 0.923 1.214 1.802 sum -5.294 14.444 -4.988 16.172 Atomic orbital electron populations 1.22579 0.86769 1.04272 0.99602 1.61627 1.08126 1.12742 1.41998 1.22129 0.95784 0.88810 1.00364 1.21620 0.94332 1.00031 0.99665 1.21575 1.00321 0.95298 0.98483 1.21566 0.91419 0.97829 1.03986 1.21588 0.96667 0.92477 0.93235 0.92492 1.20310 0.79329 0.86903 0.83576 1.90638 1.45891 1.72753 1.31619 1.45995 1.60844 1.17068 1.12560 1.21727 0.97020 0.81923 0.99270 1.22567 0.88274 0.94459 0.92966 0.93344 1.23765 0.98354 0.95967 1.01348 1.22190 0.88021 0.93068 0.93333 1.46146 0.98799 1.21843 1.66081 1.18933 0.80515 1.03942 1.31138 0.90398 1.24754 0.97600 0.97233 1.00800 1.69818 1.29431 1.13662 1.43791 0.86218 0.84748 0.77650 0.77785 1.21708 1.21647 1.20568 0.96396 0.91516 0.89161 0.95065 0.90546 0.91527 0.90872 0.92075 0.91212 0.90354 0.90279 0.76501 0.90965 0.92300 0.90506 0.92866 0.95639 0.90835 0.93710 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.20 9.10 60.06 0.55 0.74 16 2 N -0.52 -7.01 4.51 -236.32 -1.07 -8.07 16 3 C 0.06 0.60 5.46 -3.83 -0.02 0.58 16 4 C -0.12 -1.17 6.09 -26.65 -0.16 -1.34 16 5 C -0.12 -1.28 6.00 -26.61 -0.16 -1.44 16 6 C -0.11 -1.49 5.36 -26.65 -0.14 -1.63 16 7 C 0.07 1.01 2.24 -68.87 -0.15 0.85 16 8 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 9 C 0.51 8.72 6.26 -10.98 -0.07 8.65 16 10 O -0.53 -10.69 14.53 5.56 0.08 -10.61 16 11 N -0.71 -11.96 5.56 -60.30 -0.33 -12.30 16 12 C 0.13 2.25 5.55 -4.04 -0.02 2.23 16 13 C 0.12 2.37 4.35 -66.66 -0.29 2.08 16 14 H 0.05 0.88 8.14 -51.93 -0.42 0.46 16 15 C -0.16 -2.82 7.85 -25.80 -0.20 -3.02 16 16 C 0.16 3.63 7.51 -2.97 -0.02 3.60 16 17 N -0.60 -14.50 3.59 -170.46 -0.61 -15.11 16 18 C -0.22 -5.77 10.52 -15.06 -0.16 -5.93 16 19 H 0.08 1.97 7.83 -52.48 -0.41 1.56 16 20 C -0.01 -0.20 5.50 -17.43 -0.10 -0.30 16 21 N -0.92 -26.84 11.39 55.49 0.63 -26.20 16 22 Si 0.91 21.80 29.55 -169.99 -5.02 16.78 16 23 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 24 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 25 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 26 H 0.02 0.20 8.14 -51.93 -0.42 -0.22 16 27 H 0.07 0.73 8.09 -51.93 -0.42 0.31 16 28 H 0.09 1.37 5.63 -51.92 -0.29 1.08 16 29 H 0.03 0.31 8.14 -51.93 -0.42 -0.11 16 30 H 0.08 0.72 8.09 -51.93 -0.42 0.30 16 31 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 32 H 0.07 0.79 8.14 -51.92 -0.42 0.36 16 33 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 34 H 0.07 0.71 8.14 -51.93 -0.42 0.28 16 35 H 0.08 1.11 8.14 -51.93 -0.42 0.68 16 36 H 0.08 1.20 8.14 -51.93 -0.42 0.78 16 37 H 0.40 6.34 8.47 -40.82 -0.35 6.00 16 38 H 0.07 1.51 8.14 -51.93 -0.42 1.08 16 39 H 0.06 0.98 8.14 -51.93 -0.42 0.55 16 40 H 0.08 1.38 8.10 -51.93 -0.42 0.96 16 41 H 0.05 0.82 8.14 -51.93 -0.42 0.39 16 42 H 0.03 0.59 8.14 -51.93 -0.42 0.17 16 43 H 0.07 1.87 7.16 -51.93 -0.37 1.50 16 44 H 0.25 7.21 8.31 -40.82 -0.34 6.87 16 LS Contribution 347.90 15.07 5.24 5.24 Total: -1.00 -31.24 347.90 -9.77 -41.01 By element: Atomic # 1 Polarization: 11.91 SS G_CDS: -7.73 Total: 4.18 kcal Atomic # 6 Polarization: 6.04 SS G_CDS: -0.95 Total: 5.08 kcal Atomic # 7 Polarization: -60.31 SS G_CDS: -1.38 Total: -61.69 kcal Atomic # 8 Polarization: -10.69 SS G_CDS: 0.08 Total: -10.61 kcal Atomic # 14 Polarization: 21.80 SS G_CDS: -5.02 Total: 16.78 kcal Total LS contribution 5.24 Total: 5.24 kcal Total: -31.24 -9.77 -41.01 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001038417220.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.995 kcal (2) G-P(sol) polarization free energy of solvation -31.240 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.754 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.769 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.010 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.985 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds