Wall clock time and date at job start Tue Mar 31 2020 06:04:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46897 * 1 3 3 C 1.46840 * 110.99916 * 2 1 4 4 C 1.53043 * 109.52653 * 185.83682 * 3 2 1 5 5 C 1.53118 * 109.27588 * 300.82069 * 4 3 2 6 6 C 1.53121 * 109.16292 * 57.65388 * 5 4 3 7 7 C 1.46850 * 110.99787 * 124.20508 * 2 1 3 8 8 H 1.08994 * 109.45560 * 294.17334 * 7 2 1 9 9 C 1.50699 * 109.46247 * 54.14577 * 7 2 1 10 10 O 1.21280 * 120.00056 * 20.05782 * 9 7 2 11 11 N 1.34780 * 120.00180 * 200.04754 * 9 7 2 12 12 C 1.46496 * 120.00122 * 180.02562 * 11 9 7 13 13 C 1.53002 * 109.46969 * 180.02562 * 12 11 9 14 14 H 1.08997 * 113.03780 * 53.25307 * 13 12 11 15 15 C 1.53950 * 113.76615 * 184.99954 * 13 12 11 16 16 C 1.53950 * 86.40547 * 137.96443 * 15 13 12 17 17 N 1.47579 * 86.11621 * 336.33912 * 16 15 13 18 18 C 1.36933 * 134.49130 * 204.65918 * 17 16 15 19 19 H 1.08007 * 119.99961 * 180.02562 * 18 17 16 20 20 C 1.38808 * 120.00260 * 359.97438 * 18 17 16 21 21 N 1.31625 * 119.99852 * 0.02562 * 20 18 17 22 22 Si 1.86807 * 120.00083 * 179.97438 * 20 18 17 23 23 H 1.48503 * 109.46796 * 90.00579 * 22 20 18 24 24 H 1.48504 * 109.47023 * 210.00086 * 22 20 18 25 25 H 1.48494 * 109.47140 * 330.00336 * 22 20 18 26 26 H 1.08994 * 109.47197 * 295.79058 * 1 2 3 27 27 H 1.09001 * 109.47007 * 55.79469 * 1 2 3 28 28 H 1.09008 * 109.47115 * 175.79565 * 1 2 3 29 29 H 1.08999 * 109.46812 * 65.81820 * 3 2 1 30 30 H 1.09001 * 109.45199 * 305.84442 * 3 2 1 31 31 H 1.08990 * 109.50737 * 180.87506 * 4 3 2 32 32 H 1.09010 * 109.50057 * 60.75514 * 4 3 2 33 33 H 1.09000 * 109.52373 * 297.74433 * 5 4 3 34 34 H 1.08997 * 109.52133 * 177.55469 * 5 4 3 35 35 H 1.08994 * 109.50396 * 182.40587 * 6 5 4 36 36 H 1.08996 * 109.54026 * 62.30295 * 6 5 4 37 37 H 0.96997 * 119.99875 * 0.02562 * 11 9 7 38 38 H 1.08997 * 109.47146 * 60.00344 * 12 11 9 39 39 H 1.08996 * 109.46994 * 300.00514 * 12 11 9 40 40 H 1.09002 * 113.74409 * 23.56483 * 15 13 12 41 41 H 1.09006 * 113.74165 * 252.35934 * 15 13 12 42 42 H 1.09003 * 113.76784 * 90.64106 * 16 15 13 43 43 H 1.08999 * 113.76692 * 221.92593 * 16 15 13 44 44 H 0.96997 * 119.99589 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9952 1.3709 0.0000 4 6 3.5181 1.3342 -0.1467 5 6 4.1187 0.5371 1.0145 6 6 3.5181 -0.8714 1.0210 7 6 1.9952 -0.7707 1.1338 8 1 1.7324 -0.2706 2.0659 9 6 1.3981 -2.1543 1.1208 10 8 0.9174 -2.5977 0.0994 11 7 1.3986 -2.8992 2.2441 12 6 0.8187 -4.2444 2.2312 13 6 0.9465 -4.8682 3.6224 14 1 0.5370 -4.2379 4.4117 15 6 0.4768 -6.3326 3.6913 16 6 1.7156 -6.5872 4.5691 17 7 2.2961 -5.3956 3.9203 18 6 3.5716 -4.9553 3.6873 19 1 3.7344 -4.0182 3.1756 20 6 4.6553 -5.7129 4.1096 21 7 4.4569 -6.8547 4.7335 22 14 6.3954 -5.1126 3.7910 23 1 6.8489 -4.2803 4.9342 24 1 7.3013 -6.2793 3.6381 25 1 6.4192 -4.3011 2.5477 26 1 -0.3633 0.4471 0.9252 27 1 -0.3633 0.5777 -0.8499 28 1 -0.3634 -1.0250 -0.0753 29 1 1.7324 1.8609 0.9375 30 1 1.5634 1.9254 -0.8331 31 1 3.9098 2.3512 -0.1310 32 1 3.7814 0.8567 -1.0906 33 1 3.8886 1.0356 1.9561 34 1 5.1997 0.4715 0.8906 35 1 3.9098 -1.4301 1.8709 36 1 3.7813 -1.3842 0.0959 37 1 1.7829 -2.5445 3.0610 38 1 1.3487 -4.8616 1.5058 39 1 -0.2342 -4.1835 1.9560 40 1 0.5056 -6.8484 2.7314 41 1 -0.4686 -6.4660 4.2172 42 1 1.5315 -6.4608 5.6360 43 1 2.2370 -7.5152 4.3346 44 1 5.2143 -7.3842 5.0283 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001038417220.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:04:33 Heat of formation + Delta-G solvation = -2.846607 kcal Electronic energy + Delta-G solvation = -23190.172688 eV Core-core repulsion = 19950.100702 eV Total energy + Delta-G solvation = -3240.071986 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.184 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -41.40247 -39.82549 -38.78232 -35.58933 -34.41376 -34.16968 -32.32551 -29.89545 -29.23613 -27.68799 -25.27298 -25.11733 -23.95292 -23.35347 -21.59290 -20.91639 -20.57221 -18.81615 -18.00368 -17.35245 -17.07678 -16.48386 -16.19456 -15.92564 -15.62267 -15.55441 -15.30426 -15.00580 -14.74748 -14.30822 -14.00060 -13.81390 -13.56444 -13.30483 -13.01624 -12.94318 -12.70950 -12.66037 -12.54088 -12.37791 -12.32120 -11.89247 -11.81153 -11.66117 -11.50412 -11.35207 -11.32011 -10.81960 -10.54175 -10.00105 -9.28955 -8.87026 -7.85129 -5.16541 1.44090 1.46068 1.53386 1.60584 2.11070 2.48342 2.94530 3.32780 3.39814 3.65712 3.80741 3.93784 3.99019 4.05429 4.12379 4.16357 4.27796 4.35479 4.46366 4.51883 4.57802 4.62891 4.71646 4.73388 4.79389 4.88187 4.95514 5.02287 5.05981 5.06407 5.11052 5.15496 5.21709 5.34949 5.42504 5.47885 5.62865 5.75522 5.92734 5.99434 6.13800 6.59039 6.97199 7.26450 7.67200 8.61802 9.31819 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.016612 B = 0.005490 C = 0.004275 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1685.147786 B = 5099.412550 C = 6547.432243 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.020 3.980 2 N -0.541 5.541 3 C 0.056 3.944 4 C -0.116 4.116 5 C -0.115 4.115 6 C -0.110 4.110 7 C 0.079 3.921 8 H 0.077 0.923 9 C 0.511 3.489 10 O -0.567 6.567 11 N -0.712 5.712 12 C 0.135 3.865 13 C 0.132 3.868 14 H 0.073 0.927 15 C -0.131 4.131 16 C 0.150 3.850 17 N -0.629 5.629 18 C -0.210 4.210 19 H 0.085 0.915 20 C -0.071 4.071 21 N -0.955 5.955 22 Si 0.964 3.036 23 H -0.285 1.285 24 H -0.301 1.301 25 H -0.270 1.270 26 H 0.031 0.969 27 H 0.082 0.918 28 H 0.061 0.939 29 H 0.044 0.956 30 H 0.090 0.910 31 H 0.093 0.907 32 H 0.059 0.941 33 H 0.075 0.925 34 H 0.075 0.925 35 H 0.068 0.932 36 H 0.054 0.946 37 H 0.407 0.593 38 H 0.039 0.961 39 H 0.079 0.921 40 H 0.076 0.924 41 H 0.094 0.906 42 H 0.022 0.978 43 H 0.037 0.963 44 H 0.244 0.756 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.230 16.846 -5.095 19.027 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 N -0.267 5.267 3 C -0.071 4.071 4 C -0.153 4.153 5 C -0.153 4.153 6 C -0.148 4.148 7 C -0.033 4.033 8 H 0.095 0.905 9 C 0.298 3.702 10 O -0.446 6.446 11 N -0.362 5.362 12 C 0.010 3.990 13 C 0.027 3.973 14 H 0.090 0.910 15 C -0.170 4.170 16 C 0.025 3.975 17 N -0.356 5.356 18 C -0.339 4.339 19 H 0.103 0.897 20 C -0.264 4.264 21 N -0.605 5.605 22 Si 0.793 3.207 23 H -0.212 1.212 24 H -0.228 1.228 25 H -0.195 1.195 26 H 0.049 0.951 27 H 0.100 0.900 28 H 0.079 0.921 29 H 0.062 0.938 30 H 0.108 0.892 31 H 0.111 0.889 32 H 0.078 0.922 33 H 0.094 0.906 34 H 0.094 0.906 35 H 0.087 0.913 36 H 0.073 0.927 37 H 0.242 0.758 38 H 0.057 0.943 39 H 0.097 0.903 40 H 0.095 0.905 41 H 0.112 0.888 42 H 0.040 0.960 43 H 0.056 0.944 44 H 0.053 0.947 Dipole moment (debyes) X Y Z Total from point charges -7.094 16.289 -6.255 18.836 hybrid contribution 1.127 0.087 1.194 1.645 sum -5.966 16.376 -5.061 18.149 Atomic orbital electron populations 1.22494 0.86512 1.02802 1.00994 1.61619 1.08598 1.14544 1.41928 1.22240 0.96042 0.87224 1.01601 1.21626 0.94014 1.01182 0.98526 1.21578 1.00548 0.93461 0.99676 1.21554 0.91417 0.99592 1.02232 1.21534 0.96482 0.90708 0.94535 0.90540 1.20911 0.78514 0.87971 0.82812 1.90623 1.47401 1.73773 1.32809 1.45975 1.60728 1.16555 1.12975 1.21496 0.97722 0.82103 0.97657 1.22732 0.85404 0.95439 0.93771 0.91002 1.23559 0.98041 0.94818 1.00536 1.22157 0.90087 0.91368 0.93912 1.46496 0.99782 1.23024 1.66268 1.19301 0.81858 1.03501 1.29191 0.89683 1.25499 1.01085 0.97819 1.01990 1.70003 1.29606 1.15005 1.45911 0.85279 0.80627 0.76768 0.77986 1.21167 1.22807 1.19544 0.95055 0.89972 0.92062 0.93760 0.89212 0.88889 0.92175 0.90611 0.90596 0.91306 0.92733 0.75818 0.94272 0.90305 0.90538 0.88785 0.95982 0.94404 0.94676 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.46 9.10 127.69 1.16 1.63 16 2 N -0.54 -13.58 4.51 -901.59 -4.07 -17.65 16 3 C 0.06 1.01 5.46 86.33 0.47 1.48 16 4 C -0.12 -1.96 6.09 30.65 0.19 -1.77 16 5 C -0.12 -2.18 6.00 30.67 0.18 -2.00 16 6 C -0.11 -2.85 5.36 30.65 0.16 -2.68 16 7 C 0.08 2.09 2.24 44.19 0.10 2.19 16 8 H 0.08 1.72 8.14 -2.39 -0.02 1.70 16 9 C 0.51 17.00 6.26 87.66 0.55 17.54 16 10 O -0.57 -22.84 14.53 -3.03 -0.04 -22.88 16 11 N -0.71 -23.03 5.56 -463.07 -2.57 -25.60 16 12 C 0.14 4.70 5.55 86.38 0.48 5.18 16 13 C 0.13 4.78 4.35 45.03 0.20 4.98 16 14 H 0.07 2.37 8.14 -2.39 -0.02 2.35 16 15 C -0.13 -4.50 7.85 31.26 0.25 -4.26 16 16 C 0.15 6.87 7.51 86.49 0.65 7.52 16 17 N -0.63 -30.15 3.59 -693.21 -2.49 -32.63 16 18 C -0.21 -11.14 10.52 84.03 0.88 -10.26 16 19 H 0.09 4.27 7.83 -2.91 -0.02 4.25 16 20 C -0.07 -4.01 5.50 84.86 0.47 -3.55 16 21 N -0.96 -57.38 11.39 21.65 0.25 -57.14 16 22 Si 0.96 45.48 29.55 68.60 2.03 47.51 16 23 H -0.28 -13.05 7.11 99.48 0.71 -12.35 16 24 H -0.30 -14.61 7.11 99.48 0.71 -13.90 16 25 H -0.27 -12.14 7.11 99.48 0.71 -11.43 16 26 H 0.03 0.64 8.14 -2.39 -0.02 0.62 16 27 H 0.08 1.63 8.09 -2.39 -0.02 1.61 16 28 H 0.06 1.82 5.63 -2.38 -0.01 1.80 16 29 H 0.04 0.70 8.14 -2.39 -0.02 0.68 16 30 H 0.09 1.39 8.09 -2.39 -0.02 1.37 16 31 H 0.09 1.12 8.14 -2.39 -0.02 1.10 16 32 H 0.06 1.18 8.14 -2.38 -0.02 1.16 16 33 H 0.08 1.24 8.14 -2.39 -0.02 1.22 16 34 H 0.08 1.36 8.14 -2.39 -0.02 1.34 16 35 H 0.07 1.88 8.14 -2.39 -0.02 1.86 16 36 H 0.05 1.66 8.14 -2.39 -0.02 1.64 16 37 H 0.41 12.20 8.47 -92.71 -0.79 11.42 16 38 H 0.04 1.63 8.14 -2.39 -0.02 1.61 16 39 H 0.08 2.46 8.14 -2.39 -0.02 2.44 16 40 H 0.08 2.65 8.10 -2.39 -0.02 2.63 16 41 H 0.09 2.53 8.14 -2.38 -0.02 2.51 16 42 H 0.02 1.02 8.14 -2.39 -0.02 1.00 16 43 H 0.04 1.99 7.16 -2.39 -0.02 1.97 16 44 H 0.24 14.43 8.31 -92.71 -0.77 13.66 16 Total: -1.00 -69.15 347.90 -0.97 -70.12 By element: Atomic # 1 Polarization: 22.09 SS G_CDS: 0.18 Total: 22.27 kcal Atomic # 6 Polarization: 10.26 SS G_CDS: 5.74 Total: 16.00 kcal Atomic # 7 Polarization: -124.14 SS G_CDS: -8.88 Total: -133.02 kcal Atomic # 8 Polarization: -22.84 SS G_CDS: -0.04 Total: -22.88 kcal Atomic # 14 Polarization: 45.48 SS G_CDS: 2.03 Total: 47.51 kcal Total: -69.15 -0.97 -70.12 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001038417220.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.276 kcal (2) G-P(sol) polarization free energy of solvation -69.148 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.872 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.974 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.122 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.847 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds