Wall clock time and date at job start Tue Mar 31 2020 06:03:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46898 * 1 3 3 C 1.46839 * 111.00046 * 2 1 4 4 C 1.53036 * 109.52203 * 185.84133 * 3 2 1 5 5 C 1.53127 * 109.27466 * 300.81557 * 4 3 2 6 6 C 1.50706 * 109.51986 * 177.56068 * 5 4 3 7 7 O 1.21279 * 120.00072 * 0.02562 * 6 5 4 8 8 N 1.34777 * 119.99762 * 179.97438 * 6 5 4 9 9 C 1.46496 * 120.00258 * 179.97438 * 8 6 5 10 10 C 1.52993 * 109.47551 * 180.02562 * 9 8 6 11 11 H 1.09005 * 112.73597 * 56.24145 * 10 9 8 12 12 C 1.53493 * 113.47185 * 187.06098 * 10 9 8 13 13 C 1.53498 * 83.34716 * 140.84916 * 12 10 9 14 14 N 1.47062 * 113.47129 * 285.49909 * 10 9 8 15 15 C 1.36938 * 136.05470 * 38.05882 * 14 10 9 16 16 H 1.08001 * 120.00669 * 0.02562 * 15 14 10 17 17 C 1.38818 * 120.00072 * 180.02562 * 15 14 10 18 18 N 1.31619 * 119.99673 * 359.97438 * 17 15 14 19 19 Si 1.86796 * 120.00274 * 180.02562 * 17 15 14 20 20 H 1.48502 * 109.47039 * 359.97438 * 19 17 15 21 21 H 1.48497 * 109.47062 * 119.99535 * 19 17 15 22 22 H 1.48498 * 109.47432 * 239.99668 * 19 17 15 23 23 C 1.53112 * 109.15883 * 57.65891 * 5 4 3 24 24 C 1.46842 * 110.99638 * 124.20813 * 2 1 3 25 25 H 1.09002 * 109.47308 * 60.00121 * 1 2 3 26 26 H 1.08998 * 109.47681 * 180.02562 * 1 2 3 27 27 H 1.08995 * 109.47350 * 300.00571 * 1 2 3 28 28 H 1.08997 * 109.46735 * 65.82375 * 3 2 1 29 29 H 1.09006 * 109.45445 * 305.84075 * 3 2 1 30 30 H 1.09000 * 109.50481 * 180.88297 * 4 3 2 31 31 H 1.09001 * 109.50955 * 60.75821 * 4 3 2 32 32 H 1.08999 * 109.52435 * 297.68667 * 5 4 3 33 33 H 0.96999 * 120.00047 * 0.02562 * 8 6 5 34 34 H 1.09000 * 109.47024 * 300.00478 * 9 8 6 35 35 H 1.09004 * 109.46875 * 60.00324 * 9 8 6 36 36 H 1.09003 * 114.20573 * 254.43864 * 12 10 9 37 37 H 1.09004 * 114.20268 * 27.26127 * 12 10 9 38 38 H 1.09001 * 113.47034 * 219.15395 * 13 12 10 39 39 H 1.09002 * 113.52033 * 88.72494 * 13 12 10 40 40 H 0.97007 * 119.99797 * 180.02562 * 18 17 15 41 41 H 1.08996 * 109.50678 * 62.28697 * 23 5 4 42 42 H 1.09005 * 109.50652 * 182.40544 * 23 5 4 43 43 H 1.09003 * 109.46411 * 294.17729 * 24 2 1 44 44 H 1.09007 * 109.46595 * 54.14560 * 24 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9952 1.3709 0.0000 4 6 3.5181 1.3341 -0.1468 5 6 4.1187 0.5369 1.0145 6 6 5.6133 0.4462 0.8432 7 8 6.1468 0.9678 -0.1129 8 7 6.3570 -0.2137 1.7531 9 6 7.8097 -0.3024 1.5864 10 6 8.4086 -1.0990 2.7472 11 1 7.9700 -2.0918 2.8475 12 6 9.9435 -1.1035 2.7580 13 6 9.7554 -0.9792 4.2763 14 7 8.4537 -0.3483 4.0110 15 6 7.6414 0.5454 4.6564 16 1 6.7039 0.8431 4.2103 17 6 8.0228 1.0690 5.8842 18 7 9.1650 0.7059 6.4282 19 14 6.9145 2.2877 6.7649 20 1 5.6972 2.5287 5.9493 21 1 6.5238 1.7356 8.0869 22 1 7.6416 3.5679 6.9585 23 6 3.5180 -0.8715 1.0209 24 6 1.9951 -0.7707 1.1338 25 1 -0.3634 0.5138 -0.8900 26 1 -0.3634 -1.0276 0.0005 27 1 -0.3634 0.5139 0.8899 28 1 1.7325 1.8608 0.9375 29 1 1.5635 1.9255 -0.8332 30 1 3.9099 2.3511 -0.1310 31 1 3.7814 0.8566 -1.0906 32 1 3.8896 1.0360 1.9560 33 1 5.9302 -0.6306 2.5179 34 1 8.0375 -0.8043 0.6460 35 1 8.2361 0.7007 1.5755 36 1 10.3899 -2.0452 2.4385 37 1 10.3962 -0.2289 2.2907 38 1 10.4738 -0.3098 4.7494 39 1 9.6765 -1.9400 4.7849 40 1 9.4315 1.0715 7.2863 41 1 3.7813 -1.3837 0.0955 42 1 3.9097 -1.4303 1.8709 43 1 1.7323 -0.2708 2.0660 44 1 1.5633 -1.7716 1.1243 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001038657608.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:03:09 Heat of formation + Delta-G solvation = 14.627342 kcal Electronic energy + Delta-G solvation = -22791.241300 eV Core-core repulsion = 19551.927042 eV Total energy + Delta-G solvation = -3239.314258 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.184 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -40.03600 -38.55974 -37.83449 -34.04716 -33.59088 -32.23056 -30.96037 -28.36100 -27.91440 -26.66629 -23.54913 -23.48537 -23.22629 -21.84207 -20.46996 -19.63414 -19.14933 -17.24372 -16.48173 -15.90323 -15.51236 -15.28140 -15.22196 -14.83316 -14.61771 -14.00224 -13.89613 -13.58592 -13.43866 -13.00393 -12.80525 -12.59476 -12.48920 -11.85490 -11.82345 -11.54193 -11.34801 -11.23016 -11.12901 -10.99561 -10.80755 -10.71758 -10.58773 -10.52707 -9.99323 -9.84451 -9.52294 -9.13642 -8.84368 -8.53623 -8.51664 -6.92291 -5.79865 -3.12284 3.00508 3.34694 3.39242 3.42651 3.59374 3.73325 4.40138 4.60581 4.66501 4.83990 4.97053 5.12674 5.16199 5.21480 5.28806 5.32854 5.38312 5.44647 5.51753 5.55880 5.60359 5.62337 5.66219 5.73654 5.85981 5.91084 5.96063 6.10349 6.12741 6.32230 6.33087 6.40451 6.58876 6.72533 6.85329 6.87960 6.93584 7.20820 7.38072 7.55516 7.94532 7.95587 8.62334 8.99965 9.67312 10.60545 11.37429 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.017131 B = 0.004600 C = 0.003963 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1634.046331 B = 6085.601666 C = 7063.256229 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 N -0.545 5.545 3 C 0.055 3.945 4 C -0.094 4.094 5 C -0.110 4.110 6 C 0.516 3.484 7 O -0.552 6.552 8 N -0.713 5.713 9 C 0.121 3.879 10 C 0.127 3.873 11 H 0.048 0.952 12 C -0.161 4.161 13 C 0.151 3.849 14 N -0.602 5.602 15 C -0.213 4.213 16 H 0.080 0.920 17 C -0.008 4.008 18 N -0.918 5.918 19 Si 0.908 3.092 20 H -0.281 1.281 21 H -0.291 1.291 22 H -0.290 1.290 23 C -0.107 4.107 24 C 0.057 3.943 25 H 0.067 0.933 26 H 0.067 0.933 27 H 0.024 0.976 28 H 0.034 0.966 29 H 0.077 0.923 30 H 0.074 0.926 31 H 0.079 0.921 32 H 0.093 0.907 33 H 0.402 0.598 34 H 0.058 0.942 35 H 0.069 0.931 36 H 0.058 0.942 37 H 0.079 0.921 38 H 0.072 0.928 39 H 0.025 0.975 40 H 0.253 0.747 41 H 0.076 0.924 42 H 0.074 0.926 43 H 0.036 0.964 44 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.755 -3.975 -10.679 17.104 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 N -0.270 5.270 3 C -0.073 4.073 4 C -0.132 4.132 5 C -0.132 4.132 6 C 0.301 3.699 7 O -0.430 6.430 8 N -0.363 5.363 9 C -0.003 4.003 10 C 0.020 3.980 11 H 0.065 0.935 12 C -0.200 4.200 13 C 0.026 3.974 14 N -0.328 5.328 15 C -0.340 4.340 16 H 0.098 0.902 17 C -0.204 4.204 18 N -0.565 5.565 19 Si 0.739 3.261 20 H -0.206 1.206 21 H -0.218 1.218 22 H -0.217 1.217 23 C -0.145 4.145 24 C -0.071 4.071 25 H 0.086 0.914 26 H 0.086 0.914 27 H 0.043 0.957 28 H 0.052 0.948 29 H 0.095 0.905 30 H 0.092 0.908 31 H 0.097 0.903 32 H 0.111 0.889 33 H 0.236 0.764 34 H 0.076 0.924 35 H 0.088 0.912 36 H 0.077 0.923 37 H 0.098 0.902 38 H 0.090 0.910 39 H 0.043 0.957 40 H 0.063 0.937 41 H 0.095 0.905 42 H 0.093 0.907 43 H 0.054 0.946 44 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -12.303 -3.593 -11.501 17.221 hybrid contribution -1.100 0.798 1.899 2.336 sum -13.404 -2.795 -9.602 16.723 Atomic orbital electron populations 1.22344 0.87379 1.01994 1.00592 1.61937 1.07448 1.14078 1.43493 1.22149 0.95710 0.88858 1.00566 1.21379 0.92878 1.00614 0.98367 1.21395 0.92173 0.98284 1.01336 1.20465 0.88931 0.78035 0.82421 1.90653 1.74056 1.46916 1.31399 1.45986 1.08448 1.55279 1.26553 1.21781 0.79070 1.01365 0.98112 1.22410 0.94224 0.94061 0.87337 0.93496 1.23658 0.95228 1.00490 1.00650 1.22027 0.88993 0.95596 0.90813 1.45676 1.21442 1.46616 1.19028 1.18888 0.99966 1.15081 1.00075 0.90197 1.24774 0.97626 1.00505 0.97521 1.69839 1.21611 1.46584 1.18426 0.86109 0.79604 0.80858 0.79552 1.20587 1.21773 1.21694 1.21571 0.94400 0.95242 1.03256 1.22093 0.95171 0.98357 0.91497 0.91391 0.91415 0.95747 0.94793 0.90492 0.90754 0.90263 0.88875 0.76365 0.92390 0.91225 0.92346 0.90213 0.91012 0.95747 0.93732 0.90480 0.90738 0.94558 0.90415 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.21 9.59 60.06 0.58 0.78 16 2 N -0.54 -5.65 4.91 -242.97 -1.19 -6.84 16 3 C 0.05 0.58 5.46 -3.84 -0.02 0.56 16 4 C -0.09 -1.18 4.68 -26.65 -0.12 -1.31 16 5 C -0.11 -1.46 2.59 -91.65 -0.24 -1.70 16 6 C 0.52 8.69 7.15 -10.98 -0.08 8.61 16 7 O -0.55 -11.11 15.98 5.56 0.09 -11.02 16 8 N -0.71 -12.06 5.24 -60.30 -0.32 -12.38 16 9 C 0.12 2.21 5.52 -4.05 -0.02 2.19 16 10 C 0.13 2.44 4.10 -72.40 -0.30 2.14 16 11 H 0.05 0.86 8.14 -51.93 -0.42 0.44 16 12 C -0.16 -2.93 8.03 -26.22 -0.21 -3.14 16 13 C 0.15 3.45 7.39 -8.50 -0.06 3.39 16 14 N -0.60 -14.54 3.65 -177.00 -0.65 -15.19 16 15 C -0.21 -5.65 10.55 -15.06 -0.16 -5.81 16 16 H 0.08 2.04 7.50 -52.49 -0.39 1.64 16 17 C -0.01 -0.21 5.50 -17.43 -0.10 -0.31 16 18 N -0.92 -26.80 11.51 55.49 0.64 -26.16 16 19 Si 0.91 21.82 29.55 -169.99 -5.02 16.80 16 20 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 21 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 22 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 23 C -0.11 -1.19 5.26 -26.65 -0.14 -1.33 16 24 C 0.06 0.57 5.46 -3.83 -0.02 0.55 16 25 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 26 H 0.07 0.49 8.09 -51.93 -0.42 0.07 16 27 H 0.02 0.19 8.14 -51.93 -0.42 -0.23 16 28 H 0.03 0.35 8.14 -51.93 -0.42 -0.07 16 29 H 0.08 0.72 8.12 -51.93 -0.42 0.30 16 30 H 0.07 0.98 8.14 -51.93 -0.42 0.55 16 31 H 0.08 1.09 8.04 -51.93 -0.42 0.67 16 32 H 0.09 1.22 8.14 -51.93 -0.42 0.79 16 33 H 0.40 6.47 7.86 -40.82 -0.32 6.15 16 34 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 35 H 0.07 1.46 8.14 -51.93 -0.42 1.03 16 36 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 37 H 0.08 1.45 8.12 -51.93 -0.42 1.03 16 38 H 0.07 1.83 7.12 -51.93 -0.37 1.46 16 39 H 0.02 0.56 8.14 -51.93 -0.42 0.14 16 40 H 0.25 7.18 8.31 -40.82 -0.34 6.84 16 41 H 0.08 0.91 8.14 -51.93 -0.42 0.49 16 42 H 0.07 0.77 7.67 -51.93 -0.40 0.38 16 43 H 0.04 0.36 8.14 -51.93 -0.42 -0.06 16 44 H 0.08 0.68 8.09 -51.93 -0.42 0.26 16 LS Contribution 350.10 15.07 5.28 5.28 Total: -1.00 -31.44 350.10 -9.86 -41.30 By element: Atomic # 1 Polarization: 11.39 SS G_CDS: -7.79 Total: 3.60 kcal Atomic # 6 Polarization: 5.51 SS G_CDS: -0.89 Total: 4.61 kcal Atomic # 7 Polarization: -59.05 SS G_CDS: -1.52 Total: -60.57 kcal Atomic # 8 Polarization: -11.11 SS G_CDS: 0.09 Total: -11.02 kcal Atomic # 14 Polarization: 21.82 SS G_CDS: -5.02 Total: 16.80 kcal Total LS contribution 5.28 Total: 5.28 kcal Total: -31.44 -9.86 -41.30 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001038657608.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.927 kcal (2) G-P(sol) polarization free energy of solvation -31.437 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.490 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.862 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.300 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.627 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds