Wall clock time and date at job start Tue Mar 31 2020 06:03:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46898 * 1 3 3 C 1.46839 * 111.00046 * 2 1 4 4 C 1.53036 * 109.52203 * 185.84133 * 3 2 1 5 5 C 1.53127 * 109.27466 * 300.81557 * 4 3 2 6 6 C 1.50706 * 109.51986 * 177.56068 * 5 4 3 7 7 O 1.21279 * 120.00072 * 0.02562 * 6 5 4 8 8 N 1.34777 * 119.99762 * 179.97438 * 6 5 4 9 9 C 1.46496 * 120.00258 * 179.97438 * 8 6 5 10 10 C 1.52993 * 109.47551 * 180.02562 * 9 8 6 11 11 H 1.09005 * 112.73597 * 56.24145 * 10 9 8 12 12 C 1.53493 * 113.47185 * 187.06098 * 10 9 8 13 13 C 1.53498 * 83.34716 * 140.84916 * 12 10 9 14 14 N 1.47062 * 113.47129 * 285.49909 * 10 9 8 15 15 C 1.36938 * 136.05470 * 38.05882 * 14 10 9 16 16 H 1.08001 * 120.00669 * 0.02562 * 15 14 10 17 17 C 1.38818 * 120.00072 * 180.02562 * 15 14 10 18 18 N 1.31619 * 119.99673 * 359.97438 * 17 15 14 19 19 Si 1.86796 * 120.00274 * 180.02562 * 17 15 14 20 20 H 1.48502 * 109.47039 * 359.97438 * 19 17 15 21 21 H 1.48497 * 109.47062 * 119.99535 * 19 17 15 22 22 H 1.48498 * 109.47432 * 239.99668 * 19 17 15 23 23 C 1.53112 * 109.15883 * 57.65891 * 5 4 3 24 24 C 1.46842 * 110.99638 * 124.20813 * 2 1 3 25 25 H 1.09002 * 109.47308 * 60.00121 * 1 2 3 26 26 H 1.08998 * 109.47681 * 180.02562 * 1 2 3 27 27 H 1.08995 * 109.47350 * 300.00571 * 1 2 3 28 28 H 1.08997 * 109.46735 * 65.82375 * 3 2 1 29 29 H 1.09006 * 109.45445 * 305.84075 * 3 2 1 30 30 H 1.09000 * 109.50481 * 180.88297 * 4 3 2 31 31 H 1.09001 * 109.50955 * 60.75821 * 4 3 2 32 32 H 1.08999 * 109.52435 * 297.68667 * 5 4 3 33 33 H 0.96999 * 120.00047 * 0.02562 * 8 6 5 34 34 H 1.09000 * 109.47024 * 300.00478 * 9 8 6 35 35 H 1.09004 * 109.46875 * 60.00324 * 9 8 6 36 36 H 1.09003 * 114.20573 * 254.43864 * 12 10 9 37 37 H 1.09004 * 114.20268 * 27.26127 * 12 10 9 38 38 H 1.09001 * 113.47034 * 219.15395 * 13 12 10 39 39 H 1.09002 * 113.52033 * 88.72494 * 13 12 10 40 40 H 0.97007 * 119.99797 * 180.02562 * 18 17 15 41 41 H 1.08996 * 109.50678 * 62.28697 * 23 5 4 42 42 H 1.09005 * 109.50652 * 182.40544 * 23 5 4 43 43 H 1.09003 * 109.46411 * 294.17729 * 24 2 1 44 44 H 1.09007 * 109.46595 * 54.14560 * 24 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9952 1.3709 0.0000 4 6 3.5181 1.3341 -0.1468 5 6 4.1187 0.5369 1.0145 6 6 5.6133 0.4462 0.8432 7 8 6.1468 0.9678 -0.1129 8 7 6.3570 -0.2137 1.7531 9 6 7.8097 -0.3024 1.5864 10 6 8.4086 -1.0990 2.7472 11 1 7.9700 -2.0918 2.8475 12 6 9.9435 -1.1035 2.7580 13 6 9.7554 -0.9792 4.2763 14 7 8.4537 -0.3483 4.0110 15 6 7.6414 0.5454 4.6564 16 1 6.7039 0.8431 4.2103 17 6 8.0228 1.0690 5.8842 18 7 9.1650 0.7059 6.4282 19 14 6.9145 2.2877 6.7649 20 1 5.6972 2.5287 5.9493 21 1 6.5238 1.7356 8.0869 22 1 7.6416 3.5679 6.9585 23 6 3.5180 -0.8715 1.0209 24 6 1.9951 -0.7707 1.1338 25 1 -0.3634 0.5138 -0.8900 26 1 -0.3634 -1.0276 0.0005 27 1 -0.3634 0.5139 0.8899 28 1 1.7325 1.8608 0.9375 29 1 1.5635 1.9255 -0.8332 30 1 3.9099 2.3511 -0.1310 31 1 3.7814 0.8566 -1.0906 32 1 3.8896 1.0360 1.9560 33 1 5.9302 -0.6306 2.5179 34 1 8.0375 -0.8043 0.6460 35 1 8.2361 0.7007 1.5755 36 1 10.3899 -2.0452 2.4385 37 1 10.3962 -0.2289 2.2907 38 1 10.4738 -0.3098 4.7494 39 1 9.6765 -1.9400 4.7849 40 1 9.4315 1.0715 7.2863 41 1 3.7813 -1.3837 0.0955 42 1 3.9097 -1.4303 1.8709 43 1 1.7323 -0.2708 2.0660 44 1 1.5633 -1.7716 1.1243 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001038657608.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:03:08 Heat of formation + Delta-G solvation = -7.309007 kcal Electronic energy + Delta-G solvation = -22792.192532 eV Core-core repulsion = 19551.927042 eV Total energy + Delta-G solvation = -3240.265490 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.184 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -41.26553 -39.99030 -39.08576 -35.52008 -34.57362 -34.20096 -31.84183 -30.00862 -29.50181 -27.69027 -25.39414 -24.56446 -24.12040 -23.28971 -21.66986 -21.02504 -20.55503 -18.81077 -17.98201 -17.14998 -17.10911 -16.58704 -16.22410 -16.01993 -15.71410 -15.53829 -15.31021 -15.01580 -14.60987 -14.31731 -14.13760 -13.55412 -13.40006 -13.33114 -13.23945 -12.99021 -12.71164 -12.59457 -12.55051 -12.29505 -12.24640 -12.15310 -11.84068 -11.70330 -11.62028 -11.44650 -11.16351 -10.86571 -10.59713 -9.97920 -9.28316 -8.88775 -7.87237 -5.18798 1.43219 1.44859 1.53239 1.66638 2.26342 2.47536 2.99063 3.35227 3.43522 3.61186 3.75398 3.82173 3.94966 4.13827 4.16355 4.27346 4.35149 4.36285 4.45256 4.56098 4.57991 4.64871 4.69202 4.73040 4.75502 4.87951 4.88881 4.95162 5.05136 5.05512 5.06547 5.11292 5.16207 5.32092 5.33482 5.50042 5.59849 5.74911 5.97367 6.10705 6.13850 6.59979 6.94109 7.27398 7.64612 8.64519 9.30661 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.017131 B = 0.004600 C = 0.003963 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1634.046331 B = 6085.601666 C = 7063.256229 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 N -0.558 5.558 3 C 0.061 3.939 4 C -0.091 4.091 5 C -0.105 4.105 6 C 0.513 3.487 7 O -0.588 6.588 8 N -0.711 5.711 9 C 0.130 3.870 10 C 0.135 3.865 11 H 0.071 0.929 12 C -0.136 4.136 13 C 0.143 3.857 14 N -0.629 5.629 15 C -0.205 4.205 16 H 0.088 0.912 17 C -0.072 4.072 18 N -0.954 5.954 19 Si 0.967 3.033 20 H -0.264 1.264 21 H -0.293 1.293 22 H -0.300 1.300 23 C -0.100 4.100 24 C 0.058 3.942 25 H 0.074 0.926 26 H 0.077 0.923 27 H 0.027 0.973 28 H 0.037 0.963 29 H 0.088 0.912 30 H 0.063 0.937 31 H 0.063 0.937 32 H 0.099 0.901 33 H 0.407 0.593 34 H 0.077 0.923 35 H 0.038 0.962 36 H 0.100 0.900 37 H 0.077 0.923 38 H 0.034 0.966 39 H 0.023 0.977 40 H 0.245 0.755 41 H 0.069 0.931 42 H 0.084 0.916 43 H 0.039 0.961 44 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.745 -4.954 -11.639 19.428 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 N -0.283 5.283 3 C -0.067 4.067 4 C -0.129 4.129 5 C -0.126 4.126 6 C 0.301 3.699 7 O -0.469 6.469 8 N -0.360 5.360 9 C 0.005 3.995 10 C 0.028 3.972 11 H 0.088 0.912 12 C -0.174 4.174 13 C 0.017 3.983 14 N -0.355 5.355 15 C -0.333 4.333 16 H 0.106 0.894 17 C -0.264 4.264 18 N -0.604 5.604 19 Si 0.797 3.203 20 H -0.188 1.188 21 H -0.221 1.221 22 H -0.228 1.228 23 C -0.139 4.139 24 C -0.069 4.069 25 H 0.093 0.907 26 H 0.096 0.904 27 H 0.046 0.954 28 H 0.056 0.944 29 H 0.106 0.894 30 H 0.081 0.919 31 H 0.082 0.918 32 H 0.117 0.883 33 H 0.243 0.757 34 H 0.095 0.905 35 H 0.057 0.943 36 H 0.118 0.882 37 H 0.096 0.904 38 H 0.053 0.947 39 H 0.041 0.959 40 H 0.054 0.946 41 H 0.088 0.912 42 H 0.102 0.898 43 H 0.057 0.943 44 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -14.327 -4.598 -12.488 19.554 hybrid contribution -0.457 1.058 2.114 2.408 sum -14.784 -3.540 -10.374 18.404 Atomic orbital electron populations 1.22395 0.85875 1.02872 1.01111 1.61942 1.08864 1.13752 1.43773 1.22078 0.93950 0.89458 1.01231 1.21322 0.94596 0.99629 0.97348 1.21414 0.89455 0.99989 1.01729 1.21111 0.90374 0.76905 0.81547 1.90635 1.75054 1.48334 1.32867 1.45977 1.07960 1.55312 1.26788 1.21570 0.79798 0.99621 0.98524 1.22549 0.95170 0.94195 0.85259 0.91203 1.23485 0.94841 1.02515 0.96605 1.22040 0.87965 0.94473 0.93800 1.45997 1.21788 1.46989 1.20756 1.19251 0.99976 1.14463 0.99629 0.89436 1.25531 0.99088 1.02932 0.98873 1.70021 1.23452 1.48396 1.18535 0.85162 0.78470 0.78274 0.78419 1.18804 1.22050 1.22753 1.21546 0.95433 0.93594 1.03284 1.22104 0.94048 0.99265 0.91520 0.90685 0.90403 0.95407 0.94447 0.89382 0.91859 0.91790 0.88341 0.75712 0.90530 0.94306 0.88206 0.90428 0.94702 0.95881 0.94639 0.91234 0.89791 0.94311 0.88850 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.34 9.59 127.69 1.22 1.57 16 2 N -0.56 -10.21 4.91 -922.61 -4.53 -14.74 16 3 C 0.06 1.16 5.46 86.33 0.47 1.63 16 4 C -0.09 -2.20 4.68 30.65 0.14 -2.06 16 5 C -0.10 -2.62 2.59 -11.46 -0.03 -2.65 16 6 C 0.51 16.83 7.15 87.66 0.63 17.46 16 7 O -0.59 -23.59 15.98 -3.03 -0.05 -23.64 16 8 N -0.71 -23.01 5.24 -463.07 -2.43 -25.43 16 9 C 0.13 4.54 5.52 86.38 0.48 5.02 16 10 C 0.13 4.87 4.10 41.79 0.17 5.04 16 11 H 0.07 2.31 8.14 -2.38 -0.02 2.29 16 12 C -0.14 -4.66 8.03 30.93 0.25 -4.41 16 13 C 0.14 6.50 7.39 83.18 0.62 7.11 16 14 N -0.63 -30.09 3.65 -713.89 -2.61 -32.69 16 15 C -0.20 -10.82 10.55 84.03 0.89 -9.93 16 16 H 0.09 4.37 7.50 -2.91 -0.02 4.34 16 17 C -0.07 -4.00 5.50 84.86 0.47 -3.53 16 18 N -0.95 -57.17 11.51 21.65 0.25 -56.92 16 19 Si 0.97 45.22 29.55 68.60 2.03 47.25 16 20 H -0.26 -11.43 7.11 99.48 0.71 -10.72 16 21 H -0.29 -13.70 7.11 99.48 0.71 -12.99 16 22 H -0.30 -14.37 7.11 99.48 0.71 -13.66 16 23 C -0.10 -2.03 5.26 30.65 0.16 -1.87 16 24 C 0.06 1.01 5.46 86.33 0.47 1.48 16 25 H 0.07 0.91 8.14 -2.39 -0.02 0.89 16 26 H 0.08 0.90 8.09 -2.39 -0.02 0.88 16 27 H 0.03 0.36 8.14 -2.39 -0.02 0.34 16 28 H 0.04 0.70 8.14 -2.39 -0.02 0.68 16 29 H 0.09 1.48 8.12 -2.38 -0.02 1.46 16 30 H 0.06 1.65 8.14 -2.39 -0.02 1.63 16 31 H 0.06 1.74 8.04 -2.39 -0.02 1.72 16 32 H 0.10 2.39 8.14 -2.39 -0.02 2.37 16 33 H 0.41 12.31 7.86 -92.71 -0.73 11.58 16 34 H 0.08 2.42 8.14 -2.39 -0.02 2.40 16 35 H 0.04 1.61 8.14 -2.38 -0.02 1.59 16 36 H 0.10 2.65 8.14 -2.39 -0.02 2.63 16 37 H 0.08 2.71 8.12 -2.38 -0.02 2.69 16 38 H 0.03 1.83 7.12 -2.39 -0.02 1.81 16 39 H 0.02 1.06 8.14 -2.39 -0.02 1.04 16 40 H 0.24 14.37 8.31 -92.70 -0.77 13.60 16 41 H 0.07 1.52 8.14 -2.39 -0.02 1.50 16 42 H 0.08 1.53 7.67 -2.38 -0.02 1.51 16 43 H 0.04 0.66 8.14 -2.39 -0.02 0.64 16 44 H 0.09 1.34 8.09 -2.38 -0.02 1.32 16 Total: -1.00 -68.59 350.10 -1.17 -69.76 By element: Atomic # 1 Polarization: 21.33 SS G_CDS: 0.23 Total: 21.56 kcal Atomic # 6 Polarization: 8.92 SS G_CDS: 5.93 Total: 14.86 kcal Atomic # 7 Polarization: -120.48 SS G_CDS: -9.31 Total: -129.79 kcal Atomic # 8 Polarization: -23.59 SS G_CDS: -0.05 Total: -23.64 kcal Atomic # 14 Polarization: 45.22 SS G_CDS: 2.03 Total: 47.25 kcal Total: -68.59 -1.17 -69.76 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001038657608.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.449 kcal (2) G-P(sol) polarization free energy of solvation -68.591 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.143 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.166 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.758 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.309 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds