Wall clock time and date at job start Tue Mar 31 2020 06:03:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46901 * 1 3 3 C 1.46851 * 111.00049 * 2 1 4 4 C 1.53037 * 109.52199 * 185.84219 * 3 2 1 5 5 C 1.53121 * 109.27917 * 300.81608 * 4 3 2 6 6 C 1.50692 * 109.52359 * 177.56034 * 5 4 3 7 7 O 1.21276 * 120.00302 * 0.02562 * 6 5 4 8 8 N 1.34781 * 119.99968 * 180.02562 * 6 5 4 9 9 C 1.46503 * 120.00265 * 180.02562 * 8 6 5 10 10 C 1.52996 * 109.47303 * 179.97438 * 9 8 6 11 11 H 1.09001 * 113.04168 * 306.75346 * 10 9 8 12 12 C 1.53947 * 113.77099 * 174.99875 * 10 9 8 13 13 C 1.53939 * 86.28992 * 222.09377 * 12 10 9 14 14 N 1.47577 * 86.12072 * 23.60715 * 13 12 10 15 15 C 1.36940 * 134.49723 * 155.36216 * 14 13 12 16 16 H 1.07999 * 120.00339 * 180.02562 * 15 14 13 17 17 C 1.38811 * 119.99504 * 359.97438 * 15 14 13 18 18 N 1.31617 * 120.00459 * 359.97438 * 17 15 14 19 19 Si 1.86808 * 119.99621 * 180.02562 * 17 15 14 20 20 H 1.48497 * 109.47210 * 59.99857 * 19 17 15 21 21 H 1.48496 * 109.46752 * 180.02562 * 19 17 15 22 22 H 1.48496 * 109.46676 * 299.99532 * 19 17 15 23 23 C 1.53124 * 109.15731 * 57.65517 * 5 4 3 24 24 C 1.46847 * 111.00085 * 124.21140 * 2 1 3 25 25 H 1.08999 * 109.46819 * 60.00265 * 1 2 3 26 26 H 1.09000 * 109.47154 * 179.97438 * 1 2 3 27 27 H 1.09000 * 109.46843 * 300.00220 * 1 2 3 28 28 H 1.08997 * 109.46151 * 65.82099 * 3 2 1 29 29 H 1.09003 * 109.46149 * 305.85246 * 3 2 1 30 30 H 1.08998 * 109.50109 * 180.88007 * 4 3 2 31 31 H 1.08998 * 109.50842 * 60.76117 * 4 3 2 32 32 H 1.09002 * 109.52324 * 297.69243 * 5 4 3 33 33 H 0.97006 * 119.99977 * 359.97438 * 8 6 5 34 34 H 1.09006 * 109.46901 * 59.99865 * 9 8 6 35 35 H 1.09000 * 109.46678 * 300.00083 * 9 8 6 36 36 H 1.08997 * 113.73914 * 336.43976 * 12 10 9 37 37 H 1.09000 * 113.74041 * 107.63904 * 12 10 9 38 38 H 1.08995 * 113.77144 * 137.91046 * 13 12 10 39 39 H 1.09005 * 113.77049 * 269.30660 * 13 12 10 40 40 H 0.97001 * 120.00145 * 180.02562 * 18 17 15 41 41 H 1.09002 * 109.49882 * 62.28883 * 23 5 4 42 42 H 1.08999 * 109.50536 * 182.39881 * 23 5 4 43 43 H 1.08996 * 109.45785 * 294.17404 * 24 2 1 44 44 H 1.09001 * 109.45990 * 54.15364 * 24 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9953 1.3710 0.0000 4 6 3.5182 1.3342 -0.1468 5 6 4.1189 0.5370 1.0143 6 6 5.6133 0.4463 0.8430 7 8 6.1469 0.9680 -0.1130 8 7 6.3570 -0.2145 1.7523 9 6 7.8099 -0.3022 1.5862 10 6 8.4088 -1.0990 2.7469 11 1 8.1166 -0.7144 3.7240 12 6 9.9202 -1.3566 2.6081 13 6 9.6214 -2.7824 3.1057 14 7 8.2491 -2.5598 2.6105 15 6 7.2348 -3.3794 2.1925 16 1 6.2964 -2.9548 1.8679 17 6 7.4134 -4.7560 2.1851 18 7 8.5575 -5.2734 2.5793 19 14 6.0300 -5.8741 1.6142 20 1 5.6800 -5.5500 0.2079 21 1 6.4697 -7.2897 1.7018 22 1 4.8406 -5.6712 2.4797 23 6 3.5181 -0.8714 1.0208 24 6 1.9953 -0.7708 1.1337 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3633 0.5139 0.8900 28 1 1.7325 1.8608 0.9375 29 1 1.5635 1.9257 -0.8330 30 1 3.9099 2.3512 -0.1311 31 1 3.7814 0.8568 -1.0907 32 1 3.8897 1.0361 1.9559 33 1 5.9302 -0.6314 2.5173 34 1 8.2357 0.7012 1.5768 35 1 8.0383 -0.8027 0.6452 36 1 10.2795 -1.3170 1.5798 37 1 10.5303 -0.7693 3.2943 38 1 10.1629 -3.5588 2.5653 39 1 9.6854 -2.8924 4.1883 40 1 8.6824 -6.2354 2.5737 41 1 3.7814 -1.3836 0.0953 42 1 3.9100 -1.4303 1.8707 43 1 1.7325 -0.2708 2.0659 44 1 1.5635 -1.7716 1.1240 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001038657609.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:03:12 Heat of formation + Delta-G solvation = 11.682086 kcal Electronic energy + Delta-G solvation = -22936.533509 eV Core-core repulsion = 19697.091534 eV Total energy + Delta-G solvation = -3239.441974 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.184 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -40.01626 -38.44206 -37.71868 -34.05449 -33.56191 -32.16840 -30.90710 -28.34688 -27.84601 -26.67226 -23.53296 -23.36498 -23.17661 -21.95260 -20.46373 -19.62142 -19.01303 -17.23472 -16.43502 -15.92445 -15.51556 -15.22319 -15.14953 -14.78332 -14.55373 -14.19943 -13.75221 -13.46200 -13.37800 -13.20818 -12.67441 -12.53929 -12.47836 -11.89292 -11.70620 -11.41685 -11.29420 -11.20245 -11.09148 -11.00593 -10.73005 -10.68533 -10.57673 -10.47615 -9.99387 -9.76399 -9.56692 -9.22175 -8.79235 -8.53687 -8.47674 -6.89242 -5.75985 -3.08459 2.98831 3.38016 3.43342 3.44198 3.59190 3.78384 4.43251 4.63262 4.72935 4.86388 5.01236 5.11138 5.18742 5.21753 5.27927 5.36950 5.40734 5.47494 5.49856 5.62395 5.65824 5.67082 5.73434 5.76385 5.88591 5.92615 6.02483 6.11262 6.22108 6.33188 6.36492 6.41226 6.62816 6.73418 6.90753 6.93442 6.93761 7.24832 7.41468 7.59385 7.93864 7.98812 8.61291 9.04528 9.71603 10.59986 11.40726 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.015809 B = 0.005282 C = 0.004123 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1770.756945 B = 5299.257484 C = 6790.169694 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 N -0.545 5.545 3 C 0.057 3.943 4 C -0.095 4.095 5 C -0.107 4.107 6 C 0.515 3.485 7 O -0.551 6.551 8 N -0.714 5.714 9 C 0.123 3.877 10 C 0.126 3.874 11 H 0.049 0.951 12 C -0.156 4.156 13 C 0.159 3.841 14 N -0.602 5.602 15 C -0.219 4.219 16 H 0.078 0.922 17 C -0.007 4.007 18 N -0.920 5.920 19 Si 0.906 3.094 20 H -0.284 1.284 21 H -0.290 1.290 22 H -0.286 1.286 23 C -0.111 4.111 24 C 0.058 3.942 25 H 0.067 0.933 26 H 0.068 0.932 27 H 0.023 0.977 28 H 0.032 0.968 29 H 0.076 0.924 30 H 0.072 0.928 31 H 0.080 0.920 32 H 0.089 0.911 33 H 0.401 0.599 34 H 0.058 0.942 35 H 0.071 0.929 36 H 0.076 0.924 37 H 0.053 0.947 38 H 0.073 0.927 39 H 0.026 0.974 40 H 0.253 0.747 41 H 0.080 0.920 42 H 0.078 0.922 43 H 0.034 0.966 44 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.003 12.222 -0.316 16.448 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 N -0.270 5.270 3 C -0.071 4.071 4 C -0.133 4.133 5 C -0.128 4.128 6 C 0.301 3.699 7 O -0.429 6.429 8 N -0.364 5.364 9 C -0.002 4.002 10 C 0.018 3.982 11 H 0.066 0.934 12 C -0.195 4.195 13 C 0.034 3.966 14 N -0.328 5.328 15 C -0.346 4.346 16 H 0.096 0.904 17 C -0.203 4.203 18 N -0.567 5.567 19 Si 0.736 3.264 20 H -0.210 1.210 21 H -0.216 1.216 22 H -0.212 1.212 23 C -0.149 4.149 24 C -0.069 4.069 25 H 0.086 0.914 26 H 0.087 0.913 27 H 0.041 0.959 28 H 0.050 0.950 29 H 0.094 0.906 30 H 0.091 0.909 31 H 0.099 0.901 32 H 0.107 0.893 33 H 0.236 0.764 34 H 0.076 0.924 35 H 0.090 0.910 36 H 0.095 0.905 37 H 0.071 0.929 38 H 0.092 0.908 39 H 0.044 0.956 40 H 0.063 0.937 41 H 0.098 0.902 42 H 0.097 0.903 43 H 0.052 0.948 44 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -10.584 12.027 -1.499 16.091 hybrid contribution -1.296 -0.598 1.020 1.755 sum -11.881 11.429 -0.479 16.493 Atomic orbital electron populations 1.22342 0.87378 1.02090 1.00435 1.61914 1.07428 1.13907 1.43722 1.22130 0.95677 0.88968 1.00345 1.21388 0.92938 1.00344 0.98650 1.21368 0.92122 0.98445 1.00908 1.20488 0.88929 0.78127 0.82374 1.90655 1.74003 1.47457 1.30818 1.45994 1.08559 1.54785 1.27013 1.21737 0.78832 0.99044 1.00539 1.22500 0.93857 0.87075 0.94739 0.93425 1.23771 0.94678 0.99907 1.01148 1.22193 0.85637 0.92779 0.96021 1.46059 1.13316 0.98943 1.74522 1.18889 0.92790 0.87122 1.35813 0.90400 1.24747 0.97299 0.96467 1.01798 1.69804 1.23303 1.10958 1.52660 0.86301 0.81300 0.80152 0.78656 1.21038 1.21615 1.21237 1.21613 0.94187 0.94997 1.04089 1.22091 0.95296 0.98424 0.91130 0.91430 0.91348 0.95851 0.95006 0.90558 0.90911 0.90137 0.89270 0.76446 0.92353 0.91038 0.90528 0.92862 0.90830 0.95632 0.93666 0.90151 0.90349 0.94761 0.90271 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.23 9.59 60.07 0.58 0.80 16 2 N -0.54 -6.13 4.91 -242.96 -1.19 -7.32 16 3 C 0.06 0.59 5.46 -3.83 -0.02 0.57 16 4 C -0.10 -1.19 4.68 -26.65 -0.12 -1.31 16 5 C -0.11 -1.39 2.59 -91.65 -0.24 -1.63 16 6 C 0.52 8.59 7.16 -10.99 -0.08 8.51 16 7 O -0.55 -11.05 15.98 5.56 0.09 -10.96 16 8 N -0.71 -11.92 5.43 -60.29 -0.33 -12.25 16 9 C 0.12 2.24 5.54 -4.04 -0.02 2.21 16 10 C 0.13 2.40 4.33 -66.86 -0.29 2.11 16 11 H 0.05 0.87 8.14 -51.93 -0.42 0.45 16 12 C -0.16 -2.85 7.86 -25.81 -0.20 -3.06 16 13 C 0.16 3.63 7.51 -2.98 -0.02 3.61 16 14 N -0.60 -14.54 3.57 -170.75 -0.61 -15.15 16 15 C -0.22 -5.79 10.51 -15.06 -0.16 -5.95 16 16 H 0.08 1.97 7.80 -52.49 -0.41 1.56 16 17 C -0.01 -0.18 5.50 -17.43 -0.10 -0.28 16 18 N -0.92 -26.87 11.38 55.49 0.63 -26.23 16 19 Si 0.91 21.86 29.55 -169.99 -5.02 16.83 16 20 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 21 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 22 H -0.29 -6.69 7.11 56.52 0.40 -6.29 16 23 C -0.11 -1.45 5.26 -26.65 -0.14 -1.59 16 24 C 0.06 0.66 5.46 -3.83 -0.02 0.64 16 25 H 0.07 0.54 8.14 -51.93 -0.42 0.11 16 26 H 0.07 0.57 8.09 -51.93 -0.42 0.15 16 27 H 0.02 0.19 8.14 -51.93 -0.42 -0.23 16 28 H 0.03 0.31 8.14 -51.93 -0.42 -0.11 16 29 H 0.08 0.72 8.12 -51.93 -0.42 0.29 16 30 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 31 H 0.08 1.17 8.04 -51.93 -0.42 0.75 16 32 H 0.09 1.00 8.14 -51.93 -0.42 0.57 16 33 H 0.40 6.30 7.96 -40.82 -0.32 5.97 16 34 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 35 H 0.07 1.51 8.14 -51.93 -0.42 1.08 16 36 H 0.08 1.39 8.10 -51.93 -0.42 0.97 16 37 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 38 H 0.07 1.88 7.15 -51.93 -0.37 1.51 16 39 H 0.03 0.59 8.14 -51.93 -0.42 0.17 16 40 H 0.25 7.24 8.31 -40.82 -0.34 6.91 16 41 H 0.08 1.22 8.14 -51.93 -0.42 0.80 16 42 H 0.08 1.03 7.66 -51.93 -0.40 0.63 16 43 H 0.03 0.35 8.14 -51.93 -0.42 -0.07 16 44 H 0.08 0.86 8.09 -51.93 -0.42 0.44 16 LS Contribution 350.65 15.07 5.28 5.28 Total: -1.00 -31.42 350.65 -9.80 -41.23 By element: Atomic # 1 Polarization: 11.73 SS G_CDS: -7.81 Total: 3.92 kcal Atomic # 6 Polarization: 5.49 SS G_CDS: -0.84 Total: 4.66 kcal Atomic # 7 Polarization: -59.45 SS G_CDS: -1.50 Total: -60.95 kcal Atomic # 8 Polarization: -11.05 SS G_CDS: 0.09 Total: -10.96 kcal Atomic # 14 Polarization: 21.86 SS G_CDS: -5.02 Total: 16.83 kcal Total LS contribution 5.28 Total: 5.28 kcal Total: -31.42 -9.80 -41.23 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001038657609.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.907 kcal (2) G-P(sol) polarization free energy of solvation -31.424 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.483 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.801 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.225 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.682 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds