Wall clock time and date at job start Tue Mar 31 2020 06:03:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46901 * 1 3 3 C 1.46851 * 111.00049 * 2 1 4 4 C 1.53037 * 109.52199 * 185.84219 * 3 2 1 5 5 C 1.53121 * 109.27917 * 300.81608 * 4 3 2 6 6 C 1.50692 * 109.52359 * 177.56034 * 5 4 3 7 7 O 1.21276 * 120.00302 * 0.02562 * 6 5 4 8 8 N 1.34781 * 119.99968 * 180.02562 * 6 5 4 9 9 C 1.46503 * 120.00265 * 180.02562 * 8 6 5 10 10 C 1.52996 * 109.47303 * 179.97438 * 9 8 6 11 11 H 1.09001 * 113.04168 * 306.75346 * 10 9 8 12 12 C 1.53947 * 113.77099 * 174.99875 * 10 9 8 13 13 C 1.53939 * 86.28992 * 222.09377 * 12 10 9 14 14 N 1.47577 * 86.12072 * 23.60715 * 13 12 10 15 15 C 1.36940 * 134.49723 * 155.36216 * 14 13 12 16 16 H 1.07999 * 120.00339 * 180.02562 * 15 14 13 17 17 C 1.38811 * 119.99504 * 359.97438 * 15 14 13 18 18 N 1.31617 * 120.00459 * 359.97438 * 17 15 14 19 19 Si 1.86808 * 119.99621 * 180.02562 * 17 15 14 20 20 H 1.48497 * 109.47210 * 59.99857 * 19 17 15 21 21 H 1.48496 * 109.46752 * 180.02562 * 19 17 15 22 22 H 1.48496 * 109.46676 * 299.99532 * 19 17 15 23 23 C 1.53124 * 109.15731 * 57.65517 * 5 4 3 24 24 C 1.46847 * 111.00085 * 124.21140 * 2 1 3 25 25 H 1.08999 * 109.46819 * 60.00265 * 1 2 3 26 26 H 1.09000 * 109.47154 * 179.97438 * 1 2 3 27 27 H 1.09000 * 109.46843 * 300.00220 * 1 2 3 28 28 H 1.08997 * 109.46151 * 65.82099 * 3 2 1 29 29 H 1.09003 * 109.46149 * 305.85246 * 3 2 1 30 30 H 1.08998 * 109.50109 * 180.88007 * 4 3 2 31 31 H 1.08998 * 109.50842 * 60.76117 * 4 3 2 32 32 H 1.09002 * 109.52324 * 297.69243 * 5 4 3 33 33 H 0.97006 * 119.99977 * 359.97438 * 8 6 5 34 34 H 1.09006 * 109.46901 * 59.99865 * 9 8 6 35 35 H 1.09000 * 109.46678 * 300.00083 * 9 8 6 36 36 H 1.08997 * 113.73914 * 336.43976 * 12 10 9 37 37 H 1.09000 * 113.74041 * 107.63904 * 12 10 9 38 38 H 1.08995 * 113.77144 * 137.91046 * 13 12 10 39 39 H 1.09005 * 113.77049 * 269.30660 * 13 12 10 40 40 H 0.97001 * 120.00145 * 180.02562 * 18 17 15 41 41 H 1.09002 * 109.49882 * 62.28883 * 23 5 4 42 42 H 1.08999 * 109.50536 * 182.39881 * 23 5 4 43 43 H 1.08996 * 109.45785 * 294.17404 * 24 2 1 44 44 H 1.09001 * 109.45990 * 54.15364 * 24 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9953 1.3710 0.0000 4 6 3.5182 1.3342 -0.1468 5 6 4.1189 0.5370 1.0143 6 6 5.6133 0.4463 0.8430 7 8 6.1469 0.9680 -0.1130 8 7 6.3570 -0.2145 1.7523 9 6 7.8099 -0.3022 1.5862 10 6 8.4088 -1.0990 2.7469 11 1 8.1166 -0.7144 3.7240 12 6 9.9202 -1.3566 2.6081 13 6 9.6214 -2.7824 3.1057 14 7 8.2491 -2.5598 2.6105 15 6 7.2348 -3.3794 2.1925 16 1 6.2964 -2.9548 1.8679 17 6 7.4134 -4.7560 2.1851 18 7 8.5575 -5.2734 2.5793 19 14 6.0300 -5.8741 1.6142 20 1 5.6800 -5.5500 0.2079 21 1 6.4697 -7.2897 1.7018 22 1 4.8406 -5.6712 2.4797 23 6 3.5181 -0.8714 1.0208 24 6 1.9953 -0.7708 1.1337 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3633 0.5139 0.8900 28 1 1.7325 1.8608 0.9375 29 1 1.5635 1.9257 -0.8330 30 1 3.9099 2.3512 -0.1311 31 1 3.7814 0.8568 -1.0907 32 1 3.8897 1.0361 1.9559 33 1 5.9302 -0.6314 2.5173 34 1 8.2357 0.7012 1.5768 35 1 8.0383 -0.8027 0.6452 36 1 10.2795 -1.3170 1.5798 37 1 10.5303 -0.7693 3.2943 38 1 10.1629 -3.5588 2.5653 39 1 9.6854 -2.8924 4.1883 40 1 8.6824 -6.2354 2.5737 41 1 3.7814 -1.3836 0.0953 42 1 3.9100 -1.4303 1.8707 43 1 1.7325 -0.2708 2.0659 44 1 1.5635 -1.7716 1.1240 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001038657609.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:03:11 Heat of formation + Delta-G solvation = -10.362820 kcal Electronic energy + Delta-G solvation = -22937.489448 eV Core-core repulsion = 19697.091534 eV Total energy + Delta-G solvation = -3240.397913 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.184 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -41.24968 -39.82534 -39.05929 -35.52754 -34.58119 -34.14212 -31.84166 -29.94235 -29.52107 -27.71172 -25.27344 -24.61859 -24.13132 -23.38424 -21.67217 -20.95027 -20.49647 -18.80304 -17.96992 -17.16661 -17.04588 -16.66518 -16.07218 -15.98966 -15.83396 -15.53088 -15.40047 -14.83676 -14.71180 -14.43285 -14.01177 -13.53185 -13.40057 -13.32120 -13.19971 -12.90496 -12.68193 -12.60577 -12.56137 -12.32010 -12.25739 -12.15167 -11.84088 -11.69765 -11.51985 -11.43506 -11.31390 -10.80855 -10.63388 -9.98696 -9.25465 -8.86338 -7.84429 -5.15839 1.44434 1.47634 1.52291 1.65841 2.27092 2.49669 2.99471 3.34365 3.40668 3.61515 3.74879 3.83719 4.00037 4.13376 4.15907 4.25665 4.34730 4.36438 4.44538 4.55431 4.56946 4.64269 4.71647 4.72281 4.75638 4.87545 4.88917 4.94485 5.04683 5.06450 5.07225 5.12950 5.16714 5.33593 5.35885 5.50364 5.63505 5.76446 6.00259 6.12404 6.15729 6.60159 6.97768 7.27839 7.68228 8.62714 9.32379 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.015809 B = 0.005282 C = 0.004123 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1770.756945 B = 5299.257484 C = 6790.169694 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 N -0.566 5.566 3 C 0.062 3.938 4 C -0.092 4.092 5 C -0.098 4.098 6 C 0.512 3.488 7 O -0.588 6.588 8 N -0.711 5.711 9 C 0.132 3.868 10 C 0.133 3.867 11 H 0.073 0.927 12 C -0.132 4.132 13 C 0.150 3.850 14 N -0.629 5.629 15 C -0.211 4.211 16 H 0.086 0.914 17 C -0.070 4.070 18 N -0.955 5.955 19 Si 0.963 3.037 20 H -0.285 1.285 21 H -0.300 1.300 22 H -0.271 1.271 23 C -0.108 4.108 24 C 0.063 3.937 25 H 0.075 0.925 26 H 0.070 0.930 27 H 0.034 0.966 28 H 0.048 0.952 29 H 0.087 0.913 30 H 0.075 0.925 31 H 0.051 0.949 32 H 0.118 0.882 33 H 0.408 0.592 34 H 0.078 0.922 35 H 0.037 0.963 36 H 0.075 0.925 37 H 0.094 0.906 38 H 0.037 0.963 39 H 0.023 0.977 40 H 0.244 0.756 41 H 0.050 0.950 42 H 0.077 0.923 43 H 0.051 0.949 44 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.845 14.161 0.598 19.128 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 N -0.292 5.292 3 C -0.065 4.065 4 C -0.130 4.130 5 C -0.119 4.119 6 C 0.300 3.700 7 O -0.469 6.469 8 N -0.361 5.361 9 C 0.007 3.993 10 C 0.027 3.973 11 H 0.090 0.910 12 C -0.171 4.171 13 C 0.025 3.975 14 N -0.355 5.355 15 C -0.339 4.339 16 H 0.104 0.896 17 C -0.263 4.263 18 N -0.605 5.605 19 Si 0.792 3.208 20 H -0.212 1.212 21 H -0.226 1.226 22 H -0.197 1.197 23 C -0.146 4.146 24 C -0.065 4.065 25 H 0.094 0.906 26 H 0.089 0.911 27 H 0.052 0.948 28 H 0.066 0.934 29 H 0.106 0.894 30 H 0.093 0.907 31 H 0.070 0.930 32 H 0.136 0.864 33 H 0.243 0.757 34 H 0.096 0.904 35 H 0.056 0.944 36 H 0.094 0.906 37 H 0.112 0.888 38 H 0.056 0.944 39 H 0.041 0.959 40 H 0.053 0.947 41 H 0.069 0.931 42 H 0.096 0.904 43 H 0.069 0.931 44 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -12.455 14.002 -0.567 18.748 hybrid contribution -0.689 -1.128 0.714 1.502 sum -13.144 12.874 0.147 18.399 Atomic orbital electron populations 1.22373 0.85775 1.02594 1.01352 1.61888 1.08981 1.14320 1.43976 1.22089 0.93797 0.88972 1.01665 1.21344 0.94762 0.99927 0.96974 1.21382 0.89107 0.98877 1.02518 1.21159 0.90422 0.77031 0.81434 1.90638 1.75027 1.49018 1.32218 1.45979 1.08059 1.54727 1.27332 1.21514 0.79977 0.99435 0.98390 1.22665 0.94411 0.84332 0.95844 0.91013 1.23568 0.94862 0.96806 1.01828 1.22159 0.85245 0.94699 0.95422 1.46407 1.13266 1.01322 1.74548 1.19265 0.93406 0.87541 1.33717 0.89623 1.25481 0.99340 0.98072 1.03364 1.69991 1.25108 1.10341 1.55052 0.85377 0.79376 0.77870 0.78167 1.21197 1.22611 1.19672 1.21564 0.95992 0.94569 1.02486 1.22034 0.93514 0.98969 0.91997 0.90637 0.91126 0.94752 0.93368 0.89449 0.90659 0.93000 0.86372 0.75675 0.90357 0.94429 0.90611 0.88775 0.94421 0.95930 0.94681 0.93065 0.90438 0.93056 0.90079 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.40 9.59 127.69 1.22 1.62 16 2 N -0.57 -11.44 4.91 -922.59 -4.53 -15.97 16 3 C 0.06 1.14 5.46 86.32 0.47 1.62 16 4 C -0.09 -2.17 4.68 30.65 0.14 -2.02 16 5 C -0.10 -2.37 2.59 -11.46 -0.03 -2.40 16 6 C 0.51 16.58 7.16 87.65 0.63 17.21 16 7 O -0.59 -23.50 15.98 -3.02 -0.05 -23.55 16 8 N -0.71 -22.72 5.43 -463.06 -2.52 -25.24 16 9 C 0.13 4.61 5.54 86.38 0.48 5.09 16 10 C 0.13 4.83 4.33 45.09 0.20 5.02 16 11 H 0.07 2.36 8.14 -2.39 -0.02 2.34 16 12 C -0.13 -4.56 7.86 31.25 0.25 -4.31 16 13 C 0.15 6.87 7.51 86.48 0.65 7.52 16 14 N -0.63 -30.15 3.57 -694.15 -2.48 -32.63 16 15 C -0.21 -11.18 10.51 84.03 0.88 -10.29 16 16 H 0.09 4.28 7.80 -2.91 -0.02 4.26 16 17 C -0.07 -3.93 5.50 84.86 0.47 -3.47 16 18 N -0.95 -57.36 11.38 21.65 0.25 -57.12 16 19 Si 0.96 45.56 29.55 68.60 2.03 47.59 16 20 H -0.29 -13.40 7.11 99.48 0.71 -12.69 16 21 H -0.30 -14.51 7.11 99.48 0.71 -13.80 16 22 H -0.27 -12.02 7.11 99.48 0.71 -11.31 16 23 C -0.11 -2.68 5.26 30.65 0.16 -2.52 16 24 C 0.06 1.26 5.46 86.33 0.47 1.73 16 25 H 0.07 1.00 8.14 -2.39 -0.02 0.98 16 26 H 0.07 1.02 8.09 -2.39 -0.02 1.00 16 27 H 0.03 0.44 8.14 -2.39 -0.02 0.42 16 28 H 0.05 0.75 8.14 -2.39 -0.02 0.73 16 29 H 0.09 1.41 8.12 -2.39 -0.02 1.39 16 30 H 0.07 1.72 8.14 -2.39 -0.02 1.70 16 31 H 0.05 1.51 8.04 -2.39 -0.02 1.50 16 32 H 0.12 2.23 8.14 -2.39 -0.02 2.21 16 33 H 0.41 11.99 7.96 -92.70 -0.74 11.25 16 34 H 0.08 2.46 8.14 -2.38 -0.02 2.44 16 35 H 0.04 1.58 8.14 -2.39 -0.02 1.56 16 36 H 0.08 2.64 8.10 -2.39 -0.02 2.62 16 37 H 0.09 2.54 8.14 -2.39 -0.02 2.52 16 38 H 0.04 1.98 7.15 -2.39 -0.02 1.96 16 39 H 0.02 1.05 8.14 -2.38 -0.02 1.03 16 40 H 0.24 14.47 8.31 -92.71 -0.77 13.70 16 41 H 0.05 1.56 8.14 -2.39 -0.02 1.54 16 42 H 0.08 1.91 7.66 -2.39 -0.02 1.89 16 43 H 0.05 0.87 8.14 -2.39 -0.02 0.85 16 44 H 0.08 1.60 8.09 -2.39 -0.02 1.58 16 Total: -1.00 -69.34 350.65 -1.09 -70.43 By element: Atomic # 1 Polarization: 21.45 SS G_CDS: 0.22 Total: 21.68 kcal Atomic # 6 Polarization: 8.82 SS G_CDS: 5.99 Total: 14.81 kcal Atomic # 7 Polarization: -121.67 SS G_CDS: -9.28 Total: -130.95 kcal Atomic # 8 Polarization: -23.50 SS G_CDS: -0.05 Total: -23.55 kcal Atomic # 14 Polarization: 45.56 SS G_CDS: 2.03 Total: 47.59 kcal Total: -69.34 -1.09 -70.43 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001038657609.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.065 kcal (2) G-P(sol) polarization free energy of solvation -69.338 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.273 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.089 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.428 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.363 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds