Wall clock time and date at job start Tue Mar 31 2020 05:28:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46902 * 1 3 3 C 1.48558 * 111.00223 * 2 1 4 4 C 1.54378 * 104.59097 * 200.96009 * 3 2 1 5 5 C 1.54254 * 105.06175 * 23.85123 * 4 3 2 6 6 C 1.48553 * 110.99756 * 244.57781 * 2 1 3 7 7 H 1.09004 * 110.51287 * 40.21623 * 6 2 1 8 8 C 1.50706 * 110.41430 * 277.82213 * 6 2 1 9 9 O 1.21285 * 119.99804 * 344.82799 * 8 6 2 10 10 N 1.34774 * 120.00065 * 164.82648 * 8 6 2 11 11 C 1.46503 * 120.00042 * 180.02562 * 10 8 6 12 12 C 1.53002 * 110.91508 * 56.09906 * 11 10 8 13 13 C 1.55153 * 111.00570 * 180.02562 * 11 10 8 14 14 C 1.54323 * 103.10236 * 82.48408 * 13 11 10 15 15 N 1.47486 * 107.03754 * 22.24109 * 14 13 11 16 16 C 1.36932 * 125.59667 * 181.07379 * 15 14 13 17 17 H 1.07998 * 120.00668 * 179.97438 * 16 15 14 18 18 C 1.38813 * 119.99899 * 359.94723 * 16 15 14 19 19 N 1.31621 * 120.00113 * 359.97438 * 18 16 15 20 20 Si 1.86803 * 120.00374 * 180.02562 * 18 16 15 21 21 H 1.48501 * 109.46903 * 59.99316 * 20 18 16 22 22 H 1.48495 * 109.47343 * 179.97438 * 20 18 16 23 23 H 1.48500 * 109.46913 * 300.00128 * 20 18 16 24 24 C 1.47428 * 108.75727 * 1.02624 * 15 14 13 25 25 H 1.08997 * 109.47589 * 175.42183 * 1 2 3 26 26 H 1.09009 * 109.47076 * 295.42072 * 1 2 3 27 27 H 1.09006 * 109.47004 * 55.41783 * 1 2 3 28 28 H 1.08997 * 110.41153 * 82.18249 * 3 2 1 29 29 H 1.09004 * 110.40954 * 319.73871 * 3 2 1 30 30 H 1.09005 * 110.32170 * 264.95384 * 4 3 2 31 31 H 1.09002 * 110.40601 * 142.79693 * 4 3 2 32 32 H 1.09003 * 110.32260 * 241.09936 * 5 4 3 33 33 H 1.09004 * 110.40804 * 118.93919 * 5 4 3 34 34 H 0.96998 * 120.00375 * 0.02562 * 10 8 6 35 35 H 1.08993 * 109.46981 * 183.90402 * 12 11 10 36 36 H 1.09001 * 109.46773 * 303.90447 * 12 11 10 37 37 H 1.08999 * 109.46721 * 63.89988 * 12 11 10 38 38 H 1.09002 * 110.72030 * 200.93675 * 13 11 10 39 39 H 1.09003 * 110.72184 * 324.03326 * 13 11 10 40 40 H 1.09000 * 109.88693 * 141.69901 * 14 13 11 41 41 H 1.09005 * 109.88012 * 262.86516 * 14 13 11 42 42 H 0.96994 * 120.00608 * 180.02562 * 19 18 16 43 43 H 1.09000 * 110.36462 * 217.05803 * 24 15 14 44 44 H 1.08996 * 110.46287 * 94.77884 * 24 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 2.0015 1.3869 0.0000 4 6 3.4433 1.2499 -0.5344 5 6 3.4432 -0.0541 -1.3584 6 6 2.0013 -0.5954 -1.2526 7 1 1.4104 -0.2730 -2.1099 8 6 2.0102 -2.0994 -1.1574 9 8 1.8827 -2.6395 -0.0789 10 7 2.1599 -2.8442 -2.2706 11 6 2.1680 -4.3063 -2.1781 12 6 0.8944 -4.8179 -1.5018 13 6 2.3528 -4.9511 -3.5771 14 6 3.8806 -4.8977 -3.7879 15 7 4.4978 -4.7957 -2.4522 16 6 5.8404 -4.7030 -2.1995 17 1 6.1948 -4.6318 -1.1819 18 6 6.7461 -4.7013 -3.2515 19 7 6.3144 -4.7892 -4.4918 20 14 8.5777 -4.5757 -2.9069 21 1 9.0036 -5.7250 -2.0686 22 1 9.3253 -4.5953 -4.1898 23 1 8.8603 -3.3073 -2.1881 24 6 3.4309 -4.8087 -1.4348 25 1 -0.3634 -1.0243 -0.0820 26 1 -0.3634 0.4412 0.9282 27 1 -0.3633 0.5833 -0.8461 28 1 2.0080 1.7916 1.0120 29 1 1.4099 2.0212 -0.6602 30 1 4.1483 1.1746 0.2935 31 1 3.6955 2.0992 -1.1695 32 1 4.1483 -0.7695 -0.9350 33 1 3.6942 0.1536 -2.3986 34 1 2.2622 -2.4123 -3.1330 35 1 0.9556 -5.8995 -1.3828 36 1 0.7897 -4.3499 -0.5230 37 1 0.0306 -4.5684 -2.1180 38 1 1.9994 -5.9822 -3.5763 39 1 1.8375 -4.3690 -4.3412 40 1 4.2181 -5.8063 -4.2866 41 1 4.1420 -4.0249 -4.3863 42 1 6.9472 -4.7883 -5.2269 43 1 3.6809 -4.1360 -0.6144 44 1 3.2736 -5.8202 -1.0605 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001046189549.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:28:00 Heat of formation + Delta-G solvation = 2.195246 kcal Electronic energy + Delta-G solvation = -23719.095709 eV Core-core repulsion = 20479.242355 eV Total energy + Delta-G solvation = -3239.853355 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.184 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -40.14680 -38.50460 -36.75032 -33.81862 -32.33242 -31.80236 -30.23585 -28.96864 -28.51700 -25.71372 -25.61297 -23.72940 -22.52218 -20.98731 -20.37615 -19.79328 -18.91574 -17.29985 -16.66785 -15.99524 -15.48356 -14.91817 -14.59889 -14.36894 -14.21430 -13.81714 -13.68466 -13.35196 -13.15706 -12.71019 -12.42992 -12.13181 -11.91761 -11.84735 -11.80322 -11.62019 -11.54642 -11.37254 -11.08841 -10.86496 -10.83467 -10.63278 -10.30744 -10.28519 -10.06923 -9.94320 -9.61461 -9.09695 -8.60523 -8.48640 -8.42865 -6.76377 -5.67454 -2.98926 3.06964 3.37008 3.43261 3.47360 3.48758 4.13300 4.53985 4.60402 4.64179 4.91986 5.07510 5.08033 5.28321 5.31857 5.33506 5.42811 5.47398 5.52178 5.59845 5.67598 5.75357 5.77371 5.84452 5.87428 6.07547 6.08306 6.18966 6.21171 6.23067 6.42330 6.44940 6.59476 6.69417 6.75426 6.86721 6.91638 7.22970 7.57697 7.59485 7.83029 8.04033 8.29027 8.75007 9.26599 9.87099 10.53701 11.44692 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.017032 B = 0.005816 C = 0.004725 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1643.613682 B = 4813.181574 C = 5924.724824 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.017 3.983 2 N -0.489 5.489 3 C 0.033 3.967 4 C -0.122 4.122 5 C -0.113 4.113 6 C 0.044 3.956 7 H 0.068 0.932 8 C 0.525 3.475 9 O -0.520 6.520 10 N -0.704 5.704 11 C 0.159 3.841 12 C -0.152 4.152 13 C -0.147 4.147 14 C 0.179 3.821 15 N -0.603 5.603 16 C -0.220 4.220 17 H 0.075 0.925 18 C -0.010 4.010 19 N -0.926 5.926 20 Si 0.909 3.091 21 H -0.286 1.286 22 H -0.291 1.291 23 H -0.286 1.286 24 C 0.134 3.866 25 H 0.071 0.929 26 H 0.070 0.930 27 H 0.025 0.975 28 H 0.083 0.917 29 H 0.043 0.957 30 H 0.075 0.925 31 H 0.070 0.930 32 H 0.083 0.917 33 H 0.077 0.923 34 H 0.396 0.604 35 H 0.061 0.939 36 H 0.078 0.922 37 H 0.047 0.953 38 H 0.071 0.929 39 H 0.062 0.938 40 H 0.043 0.957 41 H 0.045 0.955 42 H 0.251 0.749 43 H 0.050 0.950 44 H 0.024 0.976 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.210 10.421 2.925 16.317 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 N -0.213 5.213 3 C -0.095 4.095 4 C -0.160 4.160 5 C -0.151 4.151 6 C -0.068 4.068 7 H 0.085 0.915 8 C 0.310 3.690 9 O -0.395 6.395 10 N -0.355 5.355 11 C 0.072 3.928 12 C -0.211 4.211 13 C -0.186 4.186 14 C 0.054 3.946 15 N -0.329 5.329 16 C -0.348 4.348 17 H 0.093 0.907 18 C -0.205 4.205 19 N -0.574 5.574 20 Si 0.740 3.260 21 H -0.212 1.212 22 H -0.217 1.217 23 H -0.213 1.213 24 C 0.007 3.993 25 H 0.090 0.910 26 H 0.089 0.911 27 H 0.043 0.957 28 H 0.102 0.898 29 H 0.061 0.939 30 H 0.093 0.907 31 H 0.089 0.911 32 H 0.102 0.898 33 H 0.096 0.904 34 H 0.230 0.770 35 H 0.080 0.920 36 H 0.097 0.903 37 H 0.066 0.934 38 H 0.090 0.910 39 H 0.081 0.919 40 H 0.062 0.938 41 H 0.063 0.937 42 H 0.061 0.939 43 H 0.068 0.932 44 H 0.041 0.959 Dipole moment (debyes) X Y Z Total from point charges -11.942 9.711 4.068 15.921 hybrid contribution 0.769 0.696 -1.155 1.552 sum -11.173 10.407 2.912 15.545 Atomic orbital electron populations 1.22511 0.87723 1.02291 1.00672 1.65065 1.08194 1.14491 1.33517 1.23154 0.95380 0.89679 1.01299 1.22285 0.96549 0.97293 0.99907 1.22226 0.94436 0.97412 1.01041 1.22647 0.97937 0.93397 0.92787 0.91464 1.20033 0.76571 0.88128 0.84301 1.90627 1.48233 1.73053 1.27600 1.45812 1.73748 1.06506 1.09417 1.21438 0.95597 0.78823 0.96918 1.22034 0.95812 1.01080 1.02174 1.23223 1.00966 0.99972 0.94438 1.21219 0.84825 1.00954 0.87602 1.44534 1.01242 1.86590 1.00544 1.19017 0.80449 1.42619 0.92739 0.90705 1.24741 0.97865 1.02617 0.95303 1.69932 1.32477 1.57552 0.97453 0.86229 0.85153 0.77943 0.76651 1.21242 1.21673 1.21290 1.21858 0.87355 0.97385 0.92711 0.91034 0.91088 0.95684 0.89840 0.93884 0.90650 0.91119 0.89824 0.90393 0.77046 0.92029 0.90323 0.93421 0.91001 0.91893 0.93848 0.93671 0.93872 0.93204 0.95851 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.19 9.44 60.07 0.57 0.76 16 2 N -0.49 -6.59 4.92 -231.72 -1.14 -7.73 16 3 C 0.03 0.35 6.49 -2.18 -0.01 0.34 16 4 C -0.12 -1.35 7.00 -25.35 -0.18 -1.52 16 5 C -0.11 -1.52 6.54 -25.35 -0.17 -1.68 16 6 C 0.04 0.61 2.68 -67.23 -0.18 0.43 16 7 H 0.07 0.79 7.97 -51.93 -0.41 0.38 16 8 C 0.53 8.93 6.09 -10.98 -0.07 8.86 16 9 O -0.52 -10.52 13.39 5.55 0.07 -10.45 16 10 N -0.70 -11.68 5.18 -45.62 -0.24 -11.91 16 11 C 0.16 2.87 0.83 -129.67 -0.11 2.76 16 12 C -0.15 -2.43 8.59 37.16 0.32 -2.11 16 13 C -0.15 -2.64 5.96 -24.90 -0.15 -2.79 16 14 C 0.18 4.22 5.38 -2.81 -0.02 4.20 16 15 N -0.60 -15.48 3.41 -169.70 -0.58 -16.05 16 16 C -0.22 -6.22 10.28 -15.06 -0.15 -6.38 16 17 H 0.08 2.10 7.83 -52.49 -0.41 1.69 16 18 C -0.01 -0.27 5.49 -17.43 -0.10 -0.37 16 19 N -0.93 -26.93 10.31 55.49 0.57 -26.36 16 20 Si 0.91 22.38 29.55 -169.99 -5.02 17.35 16 21 H -0.29 -6.99 7.11 56.52 0.40 -6.58 16 22 H -0.29 -7.17 7.11 56.52 0.40 -6.77 16 23 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 24 C 0.13 2.99 6.17 -2.52 -0.02 2.97 16 25 H 0.07 0.90 7.96 -51.93 -0.41 0.49 16 26 H 0.07 0.71 8.14 -51.92 -0.42 0.29 16 27 H 0.02 0.24 7.98 -51.93 -0.41 -0.17 16 28 H 0.08 0.82 8.14 -51.93 -0.42 0.40 16 29 H 0.04 0.40 7.90 -51.93 -0.41 -0.01 16 30 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 31 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 32 H 0.08 1.38 7.85 -51.93 -0.41 0.98 16 33 H 0.08 0.95 8.14 -51.93 -0.42 0.53 16 34 H 0.40 5.90 8.51 -40.82 -0.35 5.55 16 35 H 0.06 0.92 8.07 -51.93 -0.42 0.51 16 36 H 0.08 1.38 5.92 -51.93 -0.31 1.07 16 37 H 0.05 0.67 8.14 -51.93 -0.42 0.24 16 38 H 0.07 1.21 8.04 -51.93 -0.42 0.80 16 39 H 0.06 0.98 8.09 -51.93 -0.42 0.56 16 40 H 0.04 1.14 7.51 -51.93 -0.39 0.75 16 41 H 0.05 1.16 7.39 -51.93 -0.38 0.77 16 42 H 0.25 7.14 8.31 -40.82 -0.34 6.80 16 43 H 0.05 1.21 6.86 -51.93 -0.36 0.85 16 44 H 0.02 0.53 7.98 -51.93 -0.41 0.12 16 LS Contribution 342.04 15.07 5.15 5.15 Total: -1.00 -32.18 342.04 -9.03 -41.21 By element: Atomic # 1 Polarization: 10.92 SS G_CDS: -7.60 Total: 3.32 kcal Atomic # 6 Polarization: 5.72 SS G_CDS: -0.25 Total: 5.47 kcal Atomic # 7 Polarization: -60.68 SS G_CDS: -1.38 Total: -62.06 kcal Atomic # 8 Polarization: -10.52 SS G_CDS: 0.07 Total: -10.45 kcal Atomic # 14 Polarization: 22.38 SS G_CDS: -5.02 Total: 17.35 kcal Total LS contribution 5.15 Total: 5.15 kcal Total: -32.18 -9.03 -41.21 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001046189549.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.406 kcal (2) G-P(sol) polarization free energy of solvation -32.182 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.224 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.029 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.211 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.195 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds