Wall clock time and date at job start Tue Mar 31 2020 05:28:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46902 * 1 3 3 C 1.48558 * 111.00223 * 2 1 4 4 C 1.54378 * 104.59097 * 200.96009 * 3 2 1 5 5 C 1.54254 * 105.06175 * 23.85123 * 4 3 2 6 6 C 1.48553 * 110.99756 * 244.57781 * 2 1 3 7 7 H 1.09004 * 110.51287 * 40.21623 * 6 2 1 8 8 C 1.50706 * 110.41430 * 277.82213 * 6 2 1 9 9 O 1.21285 * 119.99804 * 344.82799 * 8 6 2 10 10 N 1.34774 * 120.00065 * 164.82648 * 8 6 2 11 11 C 1.46503 * 120.00042 * 180.02562 * 10 8 6 12 12 C 1.53002 * 110.91508 * 56.09906 * 11 10 8 13 13 C 1.55153 * 111.00570 * 180.02562 * 11 10 8 14 14 C 1.54323 * 103.10236 * 82.48408 * 13 11 10 15 15 N 1.47486 * 107.03754 * 22.24109 * 14 13 11 16 16 C 1.36932 * 125.59667 * 181.07379 * 15 14 13 17 17 H 1.07998 * 120.00668 * 179.97438 * 16 15 14 18 18 C 1.38813 * 119.99899 * 359.94723 * 16 15 14 19 19 N 1.31621 * 120.00113 * 359.97438 * 18 16 15 20 20 Si 1.86803 * 120.00374 * 180.02562 * 18 16 15 21 21 H 1.48501 * 109.46903 * 59.99316 * 20 18 16 22 22 H 1.48495 * 109.47343 * 179.97438 * 20 18 16 23 23 H 1.48500 * 109.46913 * 300.00128 * 20 18 16 24 24 C 1.47428 * 108.75727 * 1.02624 * 15 14 13 25 25 H 1.08997 * 109.47589 * 175.42183 * 1 2 3 26 26 H 1.09009 * 109.47076 * 295.42072 * 1 2 3 27 27 H 1.09006 * 109.47004 * 55.41783 * 1 2 3 28 28 H 1.08997 * 110.41153 * 82.18249 * 3 2 1 29 29 H 1.09004 * 110.40954 * 319.73871 * 3 2 1 30 30 H 1.09005 * 110.32170 * 264.95384 * 4 3 2 31 31 H 1.09002 * 110.40601 * 142.79693 * 4 3 2 32 32 H 1.09003 * 110.32260 * 241.09936 * 5 4 3 33 33 H 1.09004 * 110.40804 * 118.93919 * 5 4 3 34 34 H 0.96998 * 120.00375 * 0.02562 * 10 8 6 35 35 H 1.08993 * 109.46981 * 183.90402 * 12 11 10 36 36 H 1.09001 * 109.46773 * 303.90447 * 12 11 10 37 37 H 1.08999 * 109.46721 * 63.89988 * 12 11 10 38 38 H 1.09002 * 110.72030 * 200.93675 * 13 11 10 39 39 H 1.09003 * 110.72184 * 324.03326 * 13 11 10 40 40 H 1.09000 * 109.88693 * 141.69901 * 14 13 11 41 41 H 1.09005 * 109.88012 * 262.86516 * 14 13 11 42 42 H 0.96994 * 120.00608 * 180.02562 * 19 18 16 43 43 H 1.09000 * 110.36462 * 217.05803 * 24 15 14 44 44 H 1.08996 * 110.46287 * 94.77884 * 24 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 2.0015 1.3869 0.0000 4 6 3.4433 1.2499 -0.5344 5 6 3.4432 -0.0541 -1.3584 6 6 2.0013 -0.5954 -1.2526 7 1 1.4104 -0.2730 -2.1099 8 6 2.0102 -2.0994 -1.1574 9 8 1.8827 -2.6395 -0.0789 10 7 2.1599 -2.8442 -2.2706 11 6 2.1680 -4.3063 -2.1781 12 6 0.8944 -4.8179 -1.5018 13 6 2.3528 -4.9511 -3.5771 14 6 3.8806 -4.8977 -3.7879 15 7 4.4978 -4.7957 -2.4522 16 6 5.8404 -4.7030 -2.1995 17 1 6.1948 -4.6318 -1.1819 18 6 6.7461 -4.7013 -3.2515 19 7 6.3144 -4.7892 -4.4918 20 14 8.5777 -4.5757 -2.9069 21 1 9.0036 -5.7250 -2.0686 22 1 9.3253 -4.5953 -4.1898 23 1 8.8603 -3.3073 -2.1881 24 6 3.4309 -4.8087 -1.4348 25 1 -0.3634 -1.0243 -0.0820 26 1 -0.3634 0.4412 0.9282 27 1 -0.3633 0.5833 -0.8461 28 1 2.0080 1.7916 1.0120 29 1 1.4099 2.0212 -0.6602 30 1 4.1483 1.1746 0.2935 31 1 3.6955 2.0992 -1.1695 32 1 4.1483 -0.7695 -0.9350 33 1 3.6942 0.1536 -2.3986 34 1 2.2622 -2.4123 -3.1330 35 1 0.9556 -5.8995 -1.3828 36 1 0.7897 -4.3499 -0.5230 37 1 0.0306 -4.5684 -2.1180 38 1 1.9994 -5.9822 -3.5763 39 1 1.8375 -4.3690 -4.3412 40 1 4.2181 -5.8063 -4.2866 41 1 4.1420 -4.0249 -4.3863 42 1 6.9472 -4.7883 -5.2269 43 1 3.6809 -4.1360 -0.6144 44 1 3.2736 -5.8202 -1.0605 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001046189549.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:28:00 Heat of formation + Delta-G solvation = -21.060933 kcal Electronic energy + Delta-G solvation = -23720.104173 eV Core-core repulsion = 20479.242355 eV Total energy + Delta-G solvation = -3240.861818 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.184 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -41.44525 -39.78276 -38.23407 -35.59189 -33.73384 -33.09227 -31.88399 -30.49792 -29.82002 -27.51283 -26.61391 -25.46501 -23.78656 -22.17144 -21.89069 -21.14669 -20.38063 -18.97102 -18.23248 -17.19800 -16.84702 -16.61048 -16.12099 -15.82924 -15.50301 -15.27801 -14.94226 -14.72234 -14.40757 -14.09899 -13.86700 -13.58982 -13.40679 -13.31837 -13.10469 -12.93354 -12.79640 -12.74812 -12.53980 -12.35591 -12.11009 -12.05068 -12.02250 -11.96165 -11.68244 -11.60083 -11.48786 -10.70871 -10.44519 -9.93043 -9.41911 -8.85953 -7.85157 -5.18656 1.43697 1.46113 1.52710 1.75164 2.15781 2.48615 3.13541 3.32928 3.54012 3.60888 3.67423 3.74353 3.95257 4.06039 4.10516 4.20126 4.25322 4.43468 4.48295 4.55620 4.63867 4.69705 4.71301 4.83946 4.86312 4.87577 4.92437 4.98943 5.01309 5.02663 5.09024 5.11460 5.21645 5.37577 5.42475 5.65699 5.70874 5.77504 5.81817 6.04381 6.19737 6.73790 7.11808 7.43181 7.77200 8.42322 9.24573 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.017032 B = 0.005816 C = 0.004725 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1643.613682 B = 4813.181574 C = 5924.724824 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.020 3.980 2 N -0.520 5.520 3 C 0.037 3.963 4 C -0.118 4.118 5 C -0.114 4.114 6 C 0.051 3.949 7 H 0.096 0.904 8 C 0.520 3.480 9 O -0.557 6.557 10 N -0.701 5.701 11 C 0.169 3.831 12 C -0.142 4.142 13 C -0.129 4.129 14 C 0.186 3.814 15 N -0.619 5.619 16 C -0.242 4.242 17 H 0.066 0.934 18 C -0.056 4.056 19 N -0.945 5.945 20 Si 0.972 3.028 21 H -0.282 1.282 22 H -0.288 1.288 23 H -0.281 1.281 24 C 0.132 3.868 25 H 0.052 0.948 26 H 0.081 0.919 27 H 0.046 0.954 28 H 0.091 0.909 29 H 0.067 0.933 30 H 0.065 0.935 31 H 0.096 0.904 32 H 0.040 0.960 33 H 0.091 0.909 34 H 0.406 0.594 35 H 0.070 0.930 36 H 0.060 0.940 37 H 0.075 0.925 38 H 0.089 0.911 39 H 0.097 0.903 40 H 0.009 0.991 41 H 0.020 0.980 42 H 0.248 0.752 43 H 0.022 0.978 44 H 0.021 0.979 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.629 11.954 2.309 18.275 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 N -0.245 5.245 3 C -0.091 4.091 4 C -0.156 4.156 5 C -0.153 4.153 6 C -0.061 4.061 7 H 0.114 0.886 8 C 0.307 3.693 9 O -0.435 6.435 10 N -0.353 5.353 11 C 0.082 3.918 12 C -0.200 4.200 13 C -0.167 4.167 14 C 0.062 3.938 15 N -0.346 5.346 16 C -0.371 4.371 17 H 0.083 0.917 18 C -0.250 4.250 19 N -0.594 5.594 20 Si 0.800 3.200 21 H -0.208 1.208 22 H -0.214 1.214 23 H -0.207 1.207 24 C 0.005 3.995 25 H 0.071 0.929 26 H 0.100 0.900 27 H 0.065 0.935 28 H 0.109 0.891 29 H 0.085 0.915 30 H 0.084 0.916 31 H 0.115 0.885 32 H 0.059 0.941 33 H 0.109 0.891 34 H 0.241 0.759 35 H 0.089 0.911 36 H 0.079 0.921 37 H 0.094 0.906 38 H 0.107 0.893 39 H 0.116 0.884 40 H 0.027 0.973 41 H 0.039 0.961 42 H 0.057 0.943 43 H 0.040 0.960 44 H 0.039 0.961 Dipole moment (debyes) X Y Z Total from point charges -13.384 11.260 3.451 17.828 hybrid contribution 1.245 0.197 -0.907 1.553 sum -12.139 11.457 2.543 16.884 Atomic orbital electron populations 1.22495 0.86553 1.01619 1.02203 1.65017 1.09587 1.16323 1.33562 1.23205 0.94940 0.88543 1.02365 1.22301 0.96976 0.96701 0.99651 1.22213 0.93376 0.97714 1.01959 1.22606 0.98467 0.90784 0.94268 0.88630 1.20698 0.75322 0.89681 0.83617 1.90607 1.49844 1.74100 1.28937 1.45807 1.73438 1.05983 1.10038 1.21301 0.94426 0.79835 0.96274 1.21939 0.95301 1.01391 1.01409 1.23093 0.96646 1.01800 0.95165 1.21017 0.88617 0.98068 0.86112 1.44765 1.01189 1.86404 1.02193 1.19255 0.82298 1.42975 0.92586 0.91651 1.25476 1.01794 1.02523 0.95159 1.70125 1.33423 1.57928 0.97903 0.85260 0.80216 0.77999 0.76504 1.20806 1.21365 1.20678 1.21944 0.88836 0.96768 0.91915 0.92909 0.90009 0.93512 0.89094 0.91512 0.91616 0.88507 0.94096 0.89089 0.75915 0.91093 0.92091 0.90611 0.89261 0.88428 0.97292 0.96137 0.94265 0.95986 0.96113 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.40 9.44 127.69 1.21 1.61 16 2 N -0.52 -13.21 4.92 -887.02 -4.36 -17.57 16 3 C 0.04 0.69 6.49 86.45 0.56 1.25 16 4 C -0.12 -2.40 7.00 31.49 0.22 -2.18 16 5 C -0.11 -3.00 6.54 31.49 0.21 -2.80 16 6 C 0.05 1.32 2.68 44.32 0.12 1.44 16 7 H 0.10 1.95 7.97 -2.38 -0.02 1.94 16 8 C 0.52 17.57 6.09 87.66 0.53 18.10 16 9 O -0.56 -22.97 13.39 -3.04 -0.04 -23.01 16 10 N -0.70 -22.66 5.18 -416.63 -2.16 -24.82 16 11 C 0.17 5.94 0.83 5.00 0.00 5.94 16 12 C -0.14 -4.26 8.59 71.98 0.62 -3.64 16 13 C -0.13 -4.38 5.96 31.78 0.19 -4.19 16 14 C 0.19 8.91 5.38 86.64 0.47 9.38 16 15 N -0.62 -32.71 3.41 -690.79 -2.35 -35.06 16 16 C -0.24 -14.14 10.28 84.03 0.86 -13.28 16 17 H 0.07 3.83 7.83 -2.91 -0.02 3.80 16 18 C -0.06 -3.23 5.49 84.86 0.47 -2.77 16 19 N -0.94 -56.06 10.31 21.65 0.22 -55.84 16 20 Si 0.97 46.66 29.55 68.60 2.03 48.69 16 21 H -0.28 -13.27 7.11 99.48 0.71 -12.56 16 22 H -0.29 -13.61 7.11 99.48 0.71 -12.90 16 23 H -0.28 -13.13 7.11 99.48 0.71 -12.42 16 24 C 0.13 6.03 6.17 86.86 0.54 6.57 16 25 H 0.05 1.27 7.96 -2.39 -0.02 1.25 16 26 H 0.08 1.47 8.14 -2.38 -0.02 1.45 16 27 H 0.05 0.75 7.98 -2.38 -0.02 0.73 16 28 H 0.09 1.57 8.14 -2.39 -0.02 1.55 16 29 H 0.07 0.96 7.90 -2.39 -0.02 0.94 16 30 H 0.06 1.44 8.14 -2.38 -0.02 1.42 16 31 H 0.10 1.46 8.14 -2.39 -0.02 1.44 16 32 H 0.04 1.41 7.85 -2.39 -0.02 1.39 16 33 H 0.09 2.10 8.14 -2.38 -0.02 2.08 16 34 H 0.41 11.45 8.51 -92.71 -0.79 10.67 16 35 H 0.07 1.98 8.07 -2.39 -0.02 1.96 16 36 H 0.06 2.09 5.92 -2.39 -0.01 2.08 16 37 H 0.07 1.86 8.14 -2.39 -0.02 1.85 16 38 H 0.09 2.78 8.04 -2.39 -0.02 2.76 16 39 H 0.10 2.69 8.09 -2.39 -0.02 2.68 16 40 H 0.01 0.48 7.51 -2.39 -0.02 0.46 16 41 H 0.02 1.07 7.39 -2.38 -0.02 1.05 16 42 H 0.25 14.31 8.31 -92.71 -0.77 13.54 16 43 H 0.02 1.11 6.86 -2.39 -0.02 1.10 16 44 H 0.02 0.97 7.98 -2.39 -0.02 0.95 16 Total: -1.00 -72.50 342.04 -0.49 -72.99 By element: Atomic # 1 Polarization: 19.00 SS G_CDS: 0.18 Total: 19.18 kcal Atomic # 6 Polarization: 9.45 SS G_CDS: 5.99 Total: 15.44 kcal Atomic # 7 Polarization: -124.63 SS G_CDS: -8.65 Total: -133.28 kcal Atomic # 8 Polarization: -22.97 SS G_CDS: -0.04 Total: -23.01 kcal Atomic # 14 Polarization: 46.66 SS G_CDS: 2.03 Total: 48.69 kcal Total: -72.50 -0.49 -72.99 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001046189549.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.926 kcal (2) G-P(sol) polarization free energy of solvation -72.496 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.570 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.491 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.987 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.061 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds