Wall clock time and date at job start Tue Mar 31 2020 05:28:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46898 * 1 3 3 C 1.48536 * 110.99979 * 2 1 4 4 C 1.54933 * 103.22710 * 159.72159 * 3 2 1 5 5 C 1.54595 * 102.92326 * 322.59201 * 4 3 2 6 6 C 1.47901 * 111.00361 * 117.39802 * 2 1 3 7 7 H 1.08995 * 109.91573 * 333.51433 * 6 2 1 8 8 C 1.50699 * 110.08015 * 94.71051 * 6 2 1 9 9 O 1.21285 * 119.99874 * 18.09087 * 8 6 2 10 10 N 1.34778 * 120.00295 * 198.09535 * 8 6 2 11 11 C 1.46494 * 120.00152 * 180.02562 * 10 8 6 12 12 C 1.52998 * 110.88554 * 303.87264 * 11 10 8 13 13 C 1.55158 * 111.00211 * 179.97438 * 11 10 8 14 14 C 1.54320 * 102.94214 * 277.42544 * 13 11 10 15 15 N 1.47026 * 107.27291 * 337.80676 * 14 13 11 16 16 C 1.36934 * 125.64831 * 178.98180 * 15 14 13 17 17 H 1.08008 * 119.99511 * 174.78382 * 16 15 14 18 18 C 1.38808 * 120.00372 * 354.79459 * 16 15 14 19 19 N 1.31622 * 120.00123 * 7.04970 * 18 16 15 20 20 Si 1.86799 * 120.00357 * 187.04912 * 18 16 15 21 21 H 1.48504 * 109.46905 * 94.98204 * 20 18 16 22 22 H 1.48492 * 109.47522 * 214.98644 * 20 18 16 23 23 H 1.48505 * 109.46958 * 334.98870 * 20 18 16 24 24 C 1.47424 * 108.69954 * 358.94030 * 15 14 13 25 25 H 1.09004 * 109.46821 * 302.60137 * 1 2 3 26 26 H 1.08999 * 109.47316 * 62.59996 * 1 2 3 27 27 H 1.08999 * 109.46949 * 182.60407 * 1 2 3 28 28 H 1.09001 * 110.66508 * 41.29181 * 3 2 1 29 29 H 1.08998 * 110.81001 * 278.22848 * 3 2 1 30 30 H 1.08995 * 110.72860 * 204.23075 * 4 3 2 31 31 H 1.09005 * 110.72296 * 80.94832 * 4 3 2 32 32 H 1.09000 * 110.30649 * 263.03932 * 5 4 3 33 33 H 1.09000 * 110.39583 * 140.91426 * 5 4 3 34 34 H 0.97004 * 119.99277 * 359.97438 * 10 8 6 35 35 H 1.09005 * 109.47133 * 59.30514 * 12 11 10 36 36 H 1.09008 * 109.47040 * 179.29894 * 12 11 10 37 37 H 1.09001 * 109.47710 * 299.30171 * 12 11 10 38 38 H 1.08996 * 110.72399 * 35.78972 * 13 11 10 39 39 H 1.08999 * 110.72224 * 159.06167 * 13 11 10 40 40 H 1.09003 * 109.88514 * 97.22449 * 14 13 11 41 41 H 1.09001 * 109.88815 * 218.39041 * 14 13 11 42 42 H 0.96997 * 120.00287 * 180.02562 * 19 18 16 43 43 H 1.08999 * 110.36811 * 265.29098 * 24 15 14 44 44 H 1.09003 * 110.36506 * 142.96446 * 24 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 2.0013 1.3867 0.0000 4 6 3.4491 1.2107 0.5227 5 6 3.2983 0.1053 1.5929 6 6 1.9991 -0.6354 1.2259 7 1 1.2759 -0.5404 2.0358 8 6 2.2931 -2.0909 0.9686 9 8 2.4050 -2.4950 -0.1695 10 7 2.4315 -2.9436 2.0031 11 6 2.7178 -4.3583 1.7530 12 6 1.6559 -4.9769 0.8417 13 6 2.8355 -5.1457 3.0848 14 6 4.2893 -4.8693 3.5225 15 7 5.0428 -4.4889 2.3186 16 6 6.3675 -4.1442 2.2820 17 1 6.8519 -3.9614 1.3341 18 6 7.0879 -4.0300 3.4630 19 7 6.5397 -4.3862 4.6054 20 14 8.8355 -3.3709 3.4312 21 1 8.8200 -1.9132 3.7144 22 1 9.6460 -4.0670 4.4625 23 1 9.4298 -3.6085 2.0911 24 6 4.1361 -4.5410 1.1574 25 1 -0.3633 0.5537 0.8658 26 1 -0.3634 0.4729 -0.9124 27 1 -0.3633 -1.0266 0.0467 28 1 1.4237 2.0204 0.6730 29 1 2.0039 1.8005 -1.0084 30 1 3.8123 2.1351 0.9716 31 1 4.1115 0.8837 -0.2788 32 1 3.2137 0.5484 2.5852 33 1 4.1468 -0.5780 1.5555 34 1 2.3423 -2.6202 2.9133 35 1 1.6338 -4.4403 -0.1068 36 1 1.8977 -6.0244 0.6610 37 1 0.6797 -4.9069 1.3216 38 1 2.1310 -4.7625 3.8230 39 1 2.6791 -6.2114 2.9178 40 1 4.3101 -4.0541 4.2458 41 1 4.7216 -5.7683 3.9617 42 1 7.0430 -4.3061 5.4307 43 1 4.2158 -5.5060 0.6568 44 1 4.3627 -3.7323 0.4625 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001046189550.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:28:03 Heat of formation + Delta-G solvation = 2.249470 kcal Electronic energy + Delta-G solvation = -23760.852741 eV Core-core repulsion = 20521.001738 eV Total energy + Delta-G solvation = -3239.851003 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.184 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.13732 -38.50457 -36.73130 -33.81015 -32.31465 -31.80235 -30.24683 -28.96128 -28.50671 -25.71499 -25.61190 -23.71987 -22.42040 -21.18231 -20.34390 -19.75035 -18.88338 -17.27193 -16.65024 -15.99620 -15.52388 -15.00141 -14.59852 -14.29414 -14.09631 -13.72440 -13.62531 -13.42434 -13.20907 -12.71298 -12.50226 -12.06773 -11.92905 -11.85415 -11.76512 -11.62940 -11.55893 -11.27046 -11.06367 -10.87317 -10.84936 -10.74344 -10.29299 -10.28265 -10.03809 -9.93122 -9.64407 -9.10548 -8.58922 -8.40719 -8.38463 -6.76309 -5.69516 -2.99801 3.11581 3.37776 3.41534 3.47501 3.49282 4.14138 4.53310 4.62936 4.64591 4.89991 5.07882 5.13273 5.27913 5.31165 5.34073 5.42236 5.46772 5.53068 5.64404 5.68287 5.75672 5.77890 5.81096 5.86970 6.08658 6.11056 6.20360 6.22904 6.24189 6.43405 6.45669 6.60513 6.72483 6.76975 6.87477 6.93215 7.24975 7.56612 7.61037 7.83183 8.07370 8.29040 8.79589 9.26187 9.86596 10.53619 11.42947 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.016713 B = 0.006008 C = 0.004816 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1674.942736 B = 4659.348586 C = 5813.017539 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.019 3.981 2 N -0.497 5.497 3 C 0.037 3.963 4 C -0.121 4.121 5 C -0.122 4.122 6 C 0.050 3.950 7 H 0.068 0.932 8 C 0.524 3.476 9 O -0.518 6.518 10 N -0.706 5.706 11 C 0.160 3.840 12 C -0.152 4.152 13 C -0.147 4.147 14 C 0.177 3.823 15 N -0.602 5.602 16 C -0.220 4.220 17 H 0.076 0.924 18 C -0.009 4.009 19 N -0.923 5.923 20 Si 0.907 3.093 21 H -0.290 1.290 22 H -0.292 1.292 23 H -0.281 1.281 24 C 0.133 3.867 25 H 0.025 0.975 26 H 0.071 0.929 27 H 0.068 0.932 28 H 0.044 0.956 29 H 0.084 0.916 30 H 0.073 0.927 31 H 0.078 0.922 32 H 0.075 0.925 33 H 0.086 0.914 34 H 0.395 0.605 35 H 0.078 0.922 36 H 0.060 0.940 37 H 0.047 0.953 38 H 0.063 0.937 39 H 0.071 0.929 40 H 0.046 0.954 41 H 0.041 0.959 42 H 0.250 0.750 43 H 0.024 0.976 44 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.096 8.627 -3.814 16.139 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 N -0.221 5.221 3 C -0.091 4.091 4 C -0.159 4.159 5 C -0.160 4.160 6 C -0.062 4.062 7 H 0.086 0.914 8 C 0.308 3.692 9 O -0.393 6.393 10 N -0.357 5.357 11 C 0.073 3.927 12 C -0.210 4.210 13 C -0.186 4.186 14 C 0.052 3.948 15 N -0.329 5.329 16 C -0.349 4.349 17 H 0.094 0.906 18 C -0.204 4.204 19 N -0.571 5.571 20 Si 0.738 3.262 21 H -0.218 1.218 22 H -0.218 1.218 23 H -0.207 1.207 24 C 0.006 3.994 25 H 0.044 0.956 26 H 0.089 0.911 27 H 0.087 0.913 28 H 0.062 0.938 29 H 0.102 0.898 30 H 0.092 0.908 31 H 0.097 0.903 32 H 0.094 0.906 33 H 0.105 0.895 34 H 0.229 0.771 35 H 0.097 0.903 36 H 0.079 0.921 37 H 0.066 0.934 38 H 0.081 0.919 39 H 0.090 0.910 40 H 0.064 0.936 41 H 0.059 0.941 42 H 0.061 0.939 43 H 0.041 0.959 44 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -12.678 8.051 -4.973 15.820 hybrid contribution 0.596 0.875 1.402 1.757 sum -12.082 8.926 -3.571 15.440 Atomic orbital electron populations 1.22515 0.87644 1.02135 1.00653 1.64310 1.07837 1.14318 1.35626 1.23254 0.95279 0.89330 1.01209 1.22474 0.96502 0.98274 0.98687 1.22352 0.96706 0.97870 0.99076 1.22351 0.98002 0.93559 0.92324 0.91439 1.20130 0.76995 0.86761 0.85285 1.90617 1.49119 1.77715 1.21865 1.45822 1.72414 1.08602 1.08846 1.21422 0.95475 0.79759 0.96067 1.22029 0.97216 1.00650 1.01114 1.23218 1.00750 0.99363 0.95225 1.21150 0.84939 0.99428 0.89256 1.44438 1.06438 1.80007 1.01973 1.19066 0.84229 1.38677 0.92884 0.90616 1.24761 0.98394 1.01888 0.95389 1.69965 1.36563 1.53093 0.97488 0.86158 0.84314 0.78635 0.77105 1.21763 1.21849 1.20664 1.21869 0.87784 0.98490 0.91226 0.95611 0.91064 0.91331 0.93820 0.89788 0.90790 0.90298 0.90633 0.89511 0.77105 0.90330 0.92112 0.93425 0.91872 0.91006 0.93551 0.94115 0.93922 0.95881 0.93146 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.21 9.40 60.06 0.56 0.77 16 2 N -0.50 -6.68 4.77 -232.17 -1.11 -7.79 16 3 C 0.04 0.40 6.56 -1.90 -0.01 0.39 16 4 C -0.12 -1.42 7.06 -24.87 -0.18 -1.60 16 5 C -0.12 -1.63 6.56 -25.38 -0.17 -1.80 16 6 C 0.05 0.69 2.87 -67.80 -0.19 0.49 16 7 H 0.07 0.80 7.73 -51.93 -0.40 0.40 16 8 C 0.52 8.98 6.24 -10.99 -0.07 8.92 16 9 O -0.52 -10.60 13.42 5.55 0.07 -10.53 16 10 N -0.71 -11.79 5.18 -45.63 -0.24 -12.03 16 11 C 0.16 2.89 0.82 -129.67 -0.11 2.79 16 12 C -0.15 -2.44 8.52 37.16 0.32 -2.12 16 13 C -0.15 -2.64 5.97 -24.90 -0.15 -2.79 16 14 C 0.18 4.18 5.37 -3.06 -0.02 4.17 16 15 N -0.60 -15.45 3.39 -170.07 -0.58 -16.03 16 16 C -0.22 -6.22 10.26 -15.06 -0.15 -6.38 16 17 H 0.08 2.13 7.84 -52.48 -0.41 1.72 16 18 C -0.01 -0.24 5.48 -17.43 -0.10 -0.34 16 19 N -0.92 -26.83 10.36 55.49 0.57 -26.26 16 20 Si 0.91 22.30 29.56 -169.99 -5.02 17.27 16 21 H -0.29 -7.11 7.11 56.52 0.40 -6.70 16 22 H -0.29 -7.22 7.11 56.52 0.40 -6.82 16 23 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 24 C 0.13 2.98 6.17 -2.53 -0.02 2.96 16 25 H 0.03 0.24 8.00 -51.93 -0.42 -0.18 16 26 H 0.07 0.69 8.14 -51.93 -0.42 0.26 16 27 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 28 H 0.04 0.41 7.96 -51.93 -0.41 0.00 16 29 H 0.08 0.85 8.14 -51.93 -0.42 0.42 16 30 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 31 H 0.08 1.02 8.14 -51.93 -0.42 0.60 16 32 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 33 H 0.09 1.44 7.68 -51.93 -0.40 1.04 16 34 H 0.40 5.95 8.51 -40.82 -0.35 5.60 16 35 H 0.08 1.40 6.01 -51.93 -0.31 1.09 16 36 H 0.06 0.91 8.13 -51.92 -0.42 0.49 16 37 H 0.05 0.68 8.14 -51.93 -0.42 0.25 16 38 H 0.06 0.98 8.09 -51.93 -0.42 0.56 16 39 H 0.07 1.22 8.04 -51.93 -0.42 0.80 16 40 H 0.05 1.19 7.30 -51.93 -0.38 0.81 16 41 H 0.04 1.08 7.61 -51.93 -0.40 0.68 16 42 H 0.25 7.10 8.31 -40.82 -0.34 6.76 16 43 H 0.02 0.52 8.03 -51.93 -0.42 0.11 16 44 H 0.05 1.22 6.86 -51.93 -0.36 0.87 16 LS Contribution 342.39 15.07 5.16 5.16 Total: -1.00 -32.25 342.39 -9.01 -41.26 By element: Atomic # 1 Polarization: 11.08 SS G_CDS: -7.60 Total: 3.48 kcal Atomic # 6 Polarization: 5.74 SS G_CDS: -0.27 Total: 5.46 kcal Atomic # 7 Polarization: -60.76 SS G_CDS: -1.35 Total: -62.10 kcal Atomic # 8 Polarization: -10.60 SS G_CDS: 0.07 Total: -10.53 kcal Atomic # 14 Polarization: 22.30 SS G_CDS: -5.02 Total: 17.27 kcal Total LS contribution 5.16 Total: 5.16 kcal Total: -32.25 -9.01 -41.26 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001046189550.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.510 kcal (2) G-P(sol) polarization free energy of solvation -32.248 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.262 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.012 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.261 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.249 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds