Wall clock time and date at job start Tue Mar 31 2020 05:28:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46898 * 1 3 3 C 1.48536 * 110.99979 * 2 1 4 4 C 1.54933 * 103.22710 * 159.72159 * 3 2 1 5 5 C 1.54595 * 102.92326 * 322.59201 * 4 3 2 6 6 C 1.47901 * 111.00361 * 117.39802 * 2 1 3 7 7 H 1.08995 * 109.91573 * 333.51433 * 6 2 1 8 8 C 1.50699 * 110.08015 * 94.71051 * 6 2 1 9 9 O 1.21285 * 119.99874 * 18.09087 * 8 6 2 10 10 N 1.34778 * 120.00295 * 198.09535 * 8 6 2 11 11 C 1.46494 * 120.00152 * 180.02562 * 10 8 6 12 12 C 1.52998 * 110.88554 * 303.87264 * 11 10 8 13 13 C 1.55158 * 111.00211 * 179.97438 * 11 10 8 14 14 C 1.54320 * 102.94214 * 277.42544 * 13 11 10 15 15 N 1.47026 * 107.27291 * 337.80676 * 14 13 11 16 16 C 1.36934 * 125.64831 * 178.98180 * 15 14 13 17 17 H 1.08008 * 119.99511 * 174.78382 * 16 15 14 18 18 C 1.38808 * 120.00372 * 354.79459 * 16 15 14 19 19 N 1.31622 * 120.00123 * 7.04970 * 18 16 15 20 20 Si 1.86799 * 120.00357 * 187.04912 * 18 16 15 21 21 H 1.48504 * 109.46905 * 94.98204 * 20 18 16 22 22 H 1.48492 * 109.47522 * 214.98644 * 20 18 16 23 23 H 1.48505 * 109.46958 * 334.98870 * 20 18 16 24 24 C 1.47424 * 108.69954 * 358.94030 * 15 14 13 25 25 H 1.09004 * 109.46821 * 302.60137 * 1 2 3 26 26 H 1.08999 * 109.47316 * 62.59996 * 1 2 3 27 27 H 1.08999 * 109.46949 * 182.60407 * 1 2 3 28 28 H 1.09001 * 110.66508 * 41.29181 * 3 2 1 29 29 H 1.08998 * 110.81001 * 278.22848 * 3 2 1 30 30 H 1.08995 * 110.72860 * 204.23075 * 4 3 2 31 31 H 1.09005 * 110.72296 * 80.94832 * 4 3 2 32 32 H 1.09000 * 110.30649 * 263.03932 * 5 4 3 33 33 H 1.09000 * 110.39583 * 140.91426 * 5 4 3 34 34 H 0.97004 * 119.99277 * 359.97438 * 10 8 6 35 35 H 1.09005 * 109.47133 * 59.30514 * 12 11 10 36 36 H 1.09008 * 109.47040 * 179.29894 * 12 11 10 37 37 H 1.09001 * 109.47710 * 299.30171 * 12 11 10 38 38 H 1.08996 * 110.72399 * 35.78972 * 13 11 10 39 39 H 1.08999 * 110.72224 * 159.06167 * 13 11 10 40 40 H 1.09003 * 109.88514 * 97.22449 * 14 13 11 41 41 H 1.09001 * 109.88815 * 218.39041 * 14 13 11 42 42 H 0.96997 * 120.00287 * 180.02562 * 19 18 16 43 43 H 1.08999 * 110.36811 * 265.29098 * 24 15 14 44 44 H 1.09003 * 110.36506 * 142.96446 * 24 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 2.0013 1.3867 0.0000 4 6 3.4491 1.2107 0.5227 5 6 3.2983 0.1053 1.5929 6 6 1.9991 -0.6354 1.2259 7 1 1.2759 -0.5404 2.0358 8 6 2.2931 -2.0909 0.9686 9 8 2.4050 -2.4950 -0.1695 10 7 2.4315 -2.9436 2.0031 11 6 2.7178 -4.3583 1.7530 12 6 1.6559 -4.9769 0.8417 13 6 2.8355 -5.1457 3.0848 14 6 4.2893 -4.8693 3.5225 15 7 5.0428 -4.4889 2.3186 16 6 6.3675 -4.1442 2.2820 17 1 6.8519 -3.9614 1.3341 18 6 7.0879 -4.0300 3.4630 19 7 6.5397 -4.3862 4.6054 20 14 8.8355 -3.3709 3.4312 21 1 8.8200 -1.9132 3.7144 22 1 9.6460 -4.0670 4.4625 23 1 9.4298 -3.6085 2.0911 24 6 4.1361 -4.5410 1.1574 25 1 -0.3633 0.5537 0.8658 26 1 -0.3634 0.4729 -0.9124 27 1 -0.3633 -1.0266 0.0467 28 1 1.4237 2.0204 0.6730 29 1 2.0039 1.8005 -1.0084 30 1 3.8123 2.1351 0.9716 31 1 4.1115 0.8837 -0.2788 32 1 3.2137 0.5484 2.5852 33 1 4.1468 -0.5780 1.5555 34 1 2.3423 -2.6202 2.9133 35 1 1.6338 -4.4403 -0.1068 36 1 1.8977 -6.0244 0.6610 37 1 0.6797 -4.9069 1.3216 38 1 2.1310 -4.7625 3.8230 39 1 2.6791 -6.2114 2.9178 40 1 4.3101 -4.0541 4.2458 41 1 4.7216 -5.7683 3.9617 42 1 7.0430 -4.3061 5.4307 43 1 4.2158 -5.5060 0.6568 44 1 4.3627 -3.7323 0.4625 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001046189550.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:28:02 Heat of formation + Delta-G solvation = -20.944069 kcal Electronic energy + Delta-G solvation = -23761.858488 eV Core-core repulsion = 20521.001738 eV Total energy + Delta-G solvation = -3240.856751 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.184 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.43949 -39.79707 -38.22278 -35.58906 -33.72489 -33.08712 -31.89616 -30.49420 -29.82662 -27.51950 -26.59569 -25.47003 -23.69116 -22.17697 -22.08815 -21.08542 -20.35330 -18.96545 -18.19667 -17.18174 -16.87991 -16.64396 -16.24059 -15.77669 -15.45846 -15.15466 -14.94112 -14.62435 -14.47802 -14.13177 -13.88408 -13.61557 -13.42070 -13.34947 -13.08541 -12.90236 -12.81501 -12.75202 -12.49879 -12.29530 -12.09910 -12.03369 -11.98768 -11.96755 -11.74493 -11.69705 -11.50086 -10.69388 -10.44568 -9.90792 -9.34138 -8.85920 -7.87008 -5.19343 1.43614 1.44092 1.53682 1.79244 2.16871 2.47928 3.13465 3.31066 3.54988 3.61204 3.68474 3.74724 3.91393 4.06071 4.12687 4.20793 4.25302 4.45026 4.50441 4.55950 4.64266 4.69353 4.72390 4.84749 4.85584 4.86934 4.92428 4.97970 4.99569 5.02403 5.09008 5.11602 5.21736 5.37926 5.43159 5.65630 5.71626 5.79005 5.83889 6.06876 6.19829 6.76392 7.11643 7.46710 7.77063 8.42366 9.23368 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.016713 B = 0.006008 C = 0.004816 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1674.942736 B = 4659.348586 C = 5813.017539 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.021 3.979 2 N -0.528 5.528 3 C 0.042 3.958 4 C -0.121 4.121 5 C -0.121 4.121 6 C 0.056 3.944 7 H 0.095 0.905 8 C 0.519 3.481 9 O -0.557 6.557 10 N -0.703 5.703 11 C 0.169 3.831 12 C -0.141 4.141 13 C -0.128 4.128 14 C 0.185 3.815 15 N -0.618 5.618 16 C -0.242 4.242 17 H 0.066 0.934 18 C -0.055 4.055 19 N -0.943 5.943 20 Si 0.970 3.030 21 H -0.285 1.285 22 H -0.290 1.290 23 H -0.276 1.276 24 C 0.132 3.868 25 H 0.047 0.953 26 H 0.081 0.919 27 H 0.055 0.945 28 H 0.069 0.931 29 H 0.091 0.909 30 H 0.099 0.901 31 H 0.055 0.945 32 H 0.098 0.902 33 H 0.044 0.956 34 H 0.405 0.595 35 H 0.059 0.941 36 H 0.071 0.929 37 H 0.074 0.926 38 H 0.097 0.903 39 H 0.089 0.911 40 H 0.021 0.979 41 H 0.006 0.994 42 H 0.248 0.752 43 H 0.021 0.979 44 H 0.023 0.977 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.823 9.948 -3.283 18.152 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 N -0.253 5.253 3 C -0.084 4.084 4 C -0.159 4.159 5 C -0.160 4.160 6 C -0.056 4.056 7 H 0.113 0.887 8 C 0.305 3.695 9 O -0.434 6.434 10 N -0.355 5.355 11 C 0.082 3.918 12 C -0.199 4.199 13 C -0.167 4.167 14 C 0.060 3.940 15 N -0.345 5.345 16 C -0.371 4.371 17 H 0.084 0.916 18 C -0.248 4.248 19 N -0.592 5.592 20 Si 0.799 3.201 21 H -0.212 1.212 22 H -0.217 1.217 23 H -0.201 1.201 24 C 0.005 3.995 25 H 0.065 0.935 26 H 0.100 0.900 27 H 0.074 0.926 28 H 0.087 0.913 29 H 0.109 0.891 30 H 0.117 0.883 31 H 0.074 0.926 32 H 0.117 0.883 33 H 0.063 0.937 34 H 0.240 0.760 35 H 0.078 0.922 36 H 0.090 0.910 37 H 0.093 0.907 38 H 0.115 0.885 39 H 0.108 0.892 40 H 0.040 0.960 41 H 0.024 0.976 42 H 0.058 0.942 43 H 0.039 0.961 44 H 0.041 0.959 Dipole moment (debyes) X Y Z Total from point charges -14.431 9.384 -4.442 17.777 hybrid contribution 1.180 0.448 1.185 1.732 sum -13.250 9.832 -3.257 16.818 Atomic orbital electron populations 1.22527 0.86141 1.01872 1.02186 1.64248 1.09497 1.15867 1.35644 1.23286 0.94444 0.88450 1.02257 1.22490 0.97144 0.98604 0.97623 1.22344 0.94995 0.97642 1.01013 1.22304 0.98758 0.90997 0.93554 0.88711 1.20838 0.75828 0.88203 0.84635 1.90598 1.50779 1.78662 1.23381 1.45821 1.71981 1.08170 1.09478 1.21288 0.93422 0.81005 0.96103 1.21930 0.97572 1.00688 0.99742 1.23092 0.97266 1.00668 0.95628 1.20951 0.88063 0.96766 0.88184 1.44661 1.06261 1.79890 1.03644 1.19287 0.85912 1.39132 0.92780 0.91614 1.25485 1.02131 1.02167 0.95036 1.70150 1.37756 1.53566 0.97716 0.85189 0.79869 0.77955 0.77128 1.21171 1.21672 1.20103 1.21949 0.90225 0.97186 0.90130 0.93484 0.89989 0.92563 0.91316 0.89071 0.88291 0.92583 0.88311 0.93723 0.75994 0.92210 0.91014 0.90740 0.88457 0.89242 0.96032 0.97583 0.94245 0.96144 0.95905 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.40 9.40 127.69 1.20 1.60 16 2 N -0.53 -13.28 4.77 -888.46 -4.24 -17.52 16 3 C 0.04 0.82 6.56 86.65 0.57 1.39 16 4 C -0.12 -2.67 7.06 31.80 0.22 -2.45 16 5 C -0.12 -3.17 6.56 31.47 0.21 -2.96 16 6 C 0.06 1.47 2.87 44.31 0.13 1.59 16 7 H 0.10 1.95 7.73 -2.39 -0.02 1.93 16 8 C 0.52 17.66 6.24 87.66 0.55 18.21 16 9 O -0.56 -23.19 13.42 -3.04 -0.04 -23.23 16 10 N -0.70 -22.92 5.18 -416.66 -2.16 -25.08 16 11 C 0.17 5.99 0.82 5.00 0.00 5.99 16 12 C -0.14 -4.27 8.52 71.98 0.61 -3.66 16 13 C -0.13 -4.39 5.97 31.78 0.19 -4.20 16 14 C 0.19 8.87 5.37 86.73 0.47 9.34 16 15 N -0.62 -32.67 3.39 -691.98 -2.35 -35.02 16 16 C -0.24 -14.13 10.26 84.03 0.86 -13.27 16 17 H 0.07 3.85 7.84 -2.91 -0.02 3.83 16 18 C -0.05 -3.14 5.48 84.86 0.46 -2.68 16 19 N -0.94 -55.96 10.36 21.65 0.22 -55.73 16 20 Si 0.97 46.55 29.56 68.60 2.03 48.57 16 21 H -0.28 -13.36 7.11 99.48 0.71 -12.66 16 22 H -0.29 -13.79 7.11 99.48 0.71 -13.09 16 23 H -0.28 -12.88 7.11 99.48 0.71 -12.18 16 24 C 0.13 6.03 6.17 86.85 0.54 6.56 16 25 H 0.05 0.70 8.00 -2.38 -0.02 0.68 16 26 H 0.08 1.38 8.14 -2.39 -0.02 1.36 16 27 H 0.06 1.21 8.14 -2.39 -0.02 1.19 16 28 H 0.07 1.01 7.96 -2.39 -0.02 0.99 16 29 H 0.09 1.63 8.14 -2.39 -0.02 1.61 16 30 H 0.10 1.67 8.14 -2.39 -0.02 1.65 16 31 H 0.06 1.48 8.14 -2.38 -0.02 1.46 16 32 H 0.10 2.08 8.14 -2.39 -0.02 2.06 16 33 H 0.04 1.53 7.68 -2.39 -0.02 1.51 16 34 H 0.40 11.58 8.51 -92.71 -0.79 10.79 16 35 H 0.06 2.08 6.01 -2.38 -0.01 2.07 16 36 H 0.07 2.00 8.13 -2.38 -0.02 1.98 16 37 H 0.07 1.88 8.14 -2.39 -0.02 1.86 16 38 H 0.10 2.72 8.09 -2.39 -0.02 2.70 16 39 H 0.09 2.80 8.04 -2.39 -0.02 2.78 16 40 H 0.02 1.12 7.30 -2.39 -0.02 1.11 16 41 H 0.01 0.32 7.61 -2.39 -0.02 0.31 16 42 H 0.25 14.27 8.31 -92.71 -0.77 13.50 16 43 H 0.02 0.95 8.03 -2.39 -0.02 0.93 16 44 H 0.02 1.16 6.86 -2.39 -0.02 1.14 16 Total: -1.00 -72.67 342.39 -0.34 -73.02 By element: Atomic # 1 Polarization: 19.33 SS G_CDS: 0.18 Total: 19.52 kcal Atomic # 6 Polarization: 9.46 SS G_CDS: 6.01 Total: 15.47 kcal Atomic # 7 Polarization: -124.83 SS G_CDS: -8.52 Total: -133.35 kcal Atomic # 8 Polarization: -23.19 SS G_CDS: -0.04 Total: -23.23 kcal Atomic # 14 Polarization: 46.55 SS G_CDS: 2.03 Total: 48.57 kcal Total: -72.67 -0.34 -73.02 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001046189550.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.073 kcal (2) G-P(sol) polarization free energy of solvation -72.675 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.602 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.342 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.017 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.944 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds