Wall clock time and date at job start Tue Mar 31 2020 05:28:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46900 * 1 3 3 C 1.47443 * 111.00227 * 2 1 4 4 C 1.54312 * 107.23612 * 236.74273 * 3 2 1 5 5 C 1.55142 * 103.17714 * 337.62814 * 4 3 2 6 6 C 1.47844 * 110.99982 * 239.15844 * 2 1 3 7 7 H 1.09008 * 110.37208 * 27.53592 * 6 2 1 8 8 C 1.50697 * 110.37755 * 265.30738 * 6 2 1 9 9 O 1.21281 * 119.99709 * 341.45651 * 8 6 2 10 10 N 1.34772 * 120.00303 * 161.45451 * 8 6 2 11 11 C 1.46506 * 120.00067 * 180.02562 * 10 8 6 12 12 C 1.52999 * 110.88488 * 300.69791 * 11 10 8 13 13 C 1.55157 * 111.00313 * 176.81848 * 11 10 8 14 14 C 1.54321 * 102.94241 * 277.42667 * 13 11 10 15 15 N 1.47016 * 107.27203 * 337.80671 * 14 13 11 16 16 C 1.36939 * 125.65116 * 178.97734 * 15 14 13 17 17 H 1.08004 * 120.00429 * 179.97438 * 16 15 14 18 18 C 1.38815 * 119.99843 * 359.97438 * 16 15 14 19 19 N 1.31621 * 119.99792 * 0.02562 * 18 16 15 20 20 Si 1.86796 * 119.99896 * 179.97438 * 18 16 15 21 21 H 1.48492 * 109.47432 * 60.00496 * 20 18 16 22 22 H 1.48505 * 109.46756 * 180.02562 * 20 18 16 23 23 H 1.48504 * 109.47456 * 299.99948 * 20 18 16 24 24 C 1.47527 * 108.71668 * 358.94109 * 15 14 13 25 25 H 1.09001 * 109.47028 * 60.12449 * 1 2 3 26 26 H 1.08996 * 109.47194 * 180.12176 * 1 2 3 27 27 H 1.09002 * 109.47032 * 300.12355 * 1 2 3 28 28 H 1.08997 * 109.88254 * 117.33308 * 3 2 1 29 29 H 1.09001 * 110.02167 * 356.22840 * 3 2 1 30 30 H 1.09002 * 110.70596 * 96.10119 * 4 3 2 31 31 H 1.09005 * 110.70742 * 219.16269 * 4 3 2 32 32 H 1.09003 * 110.98867 * 153.83100 * 5 4 3 33 33 H 1.08996 * 110.99420 * 277.65160 * 5 4 3 34 34 H 0.96995 * 120.00334 * 359.97438 * 10 8 6 35 35 H 1.09000 * 109.47026 * 59.30295 * 12 11 10 36 36 H 1.08999 * 109.47299 * 179.29708 * 12 11 10 37 37 H 1.08994 * 109.46896 * 299.30043 * 12 11 10 38 38 H 1.09000 * 110.72445 * 35.78908 * 13 11 10 39 39 H 1.09003 * 110.71827 * 158.88599 * 13 11 10 40 40 H 1.08995 * 109.88376 * 97.22742 * 14 13 11 41 41 H 1.09005 * 109.87874 * 218.39150 * 14 13 11 42 42 H 0.97007 * 119.99872 * 179.97438 * 19 18 16 43 43 H 1.08991 * 110.37340 * 265.30557 * 24 15 14 44 44 H 1.09006 * 110.40953 * 142.94651 * 24 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9974 1.3765 0.0000 4 6 2.9159 1.5137 -1.2324 5 6 3.3089 0.0459 -1.5457 6 6 1.9988 -0.7076 -1.1851 7 1 1.2889 -0.6501 -2.0102 8 6 2.2948 -2.1463 -0.8483 9 8 2.4166 -2.4853 0.3098 10 7 2.4240 -3.0563 -1.8340 11 6 2.7112 -4.4552 -1.5065 12 6 4.0251 -4.5754 -0.7320 13 6 2.7378 -5.3318 -2.7864 14 6 1.2442 -5.6348 -3.0290 15 7 0.5495 -5.4616 -1.7449 16 6 -0.7950 -5.6179 -1.5374 17 1 -1.2104 -5.4678 -0.5518 18 6 -1.6240 -5.9695 -2.5938 19 7 -1.1177 -6.1530 -3.7948 20 14 -3.4580 -6.1835 -2.3105 21 1 -4.0338 -4.9090 -1.8115 22 1 -4.1158 -6.5577 -3.5883 23 1 -3.6822 -7.2547 -1.3067 24 6 1.5407 -5.0921 -0.7165 25 1 -0.3633 0.5119 -0.8911 26 1 -0.3633 -1.0276 0.0022 27 1 -0.3633 0.5158 0.8889 28 1 2.5697 1.5539 0.9106 29 1 1.1772 2.0911 -0.0674 30 1 2.3744 1.9547 -2.0694 31 1 3.7986 2.1059 -0.9913 32 1 3.5554 -0.0756 -2.6005 33 1 4.1343 -0.2808 -0.9133 34 1 2.3262 -2.7854 -2.7602 35 1 3.9585 -3.9958 0.1887 36 1 4.2098 -5.6220 -0.4899 37 1 4.8432 -4.1940 -1.3430 38 1 3.1599 -4.7776 -3.6248 39 1 3.2974 -6.2509 -2.6127 40 1 0.8400 -4.9407 -3.7658 41 1 1.1262 -6.6604 -3.3789 42 1 -1.6971 -6.3991 -4.5329 43 1 1.8817 -5.9788 -0.1823 44 1 1.1150 -4.3692 -0.0206 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001046189551.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:28:05 Heat of formation + Delta-G solvation = 1.588624 kcal Electronic energy + Delta-G solvation = -23675.225263 eV Core-core repulsion = 20435.345603 eV Total energy + Delta-G solvation = -3239.879660 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.184 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.10114 -38.54505 -36.74490 -33.81517 -32.23546 -31.78071 -30.23635 -29.02133 -28.52201 -25.68519 -25.59992 -23.72220 -22.55136 -21.22006 -20.31686 -19.69084 -18.91218 -17.26273 -16.69088 -16.03928 -15.32745 -15.09057 -14.59195 -14.41839 -14.16166 -13.69403 -13.50282 -13.35924 -13.05583 -12.75100 -12.69105 -12.12696 -11.99278 -11.83167 -11.74770 -11.62575 -11.53471 -11.28357 -11.23992 -10.87604 -10.84791 -10.82646 -10.29822 -10.29008 -10.07096 -9.92510 -9.61248 -9.08085 -8.58659 -8.40906 -8.25222 -6.75602 -5.67308 -2.98671 3.07090 3.42445 3.44354 3.46949 3.48374 4.15575 4.46697 4.54043 4.58544 4.79209 5.07425 5.12729 5.25670 5.34672 5.39429 5.45301 5.49934 5.53106 5.59393 5.66165 5.67797 5.70452 5.78338 5.86600 6.03152 6.07772 6.08486 6.20689 6.22722 6.43076 6.46093 6.61551 6.76553 6.83462 6.91728 7.02312 7.26142 7.58279 7.60828 7.83532 8.07900 8.30231 8.80659 9.27571 9.87682 10.54411 11.44758 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.017134 B = 0.005645 C = 0.004724 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1633.828738 B = 4958.962289 C = 5925.863540 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.022 3.978 2 N -0.509 5.509 3 C 0.044 3.956 4 C -0.141 4.141 5 C -0.114 4.114 6 C 0.053 3.947 7 H 0.074 0.926 8 C 0.525 3.475 9 O -0.518 6.518 10 N -0.705 5.705 11 C 0.159 3.841 12 C -0.150 4.150 13 C -0.147 4.147 14 C 0.179 3.821 15 N -0.603 5.603 16 C -0.220 4.220 17 H 0.075 0.925 18 C -0.010 4.010 19 N -0.926 5.926 20 Si 0.910 3.090 21 H -0.287 1.287 22 H -0.291 1.291 23 H -0.285 1.285 24 C 0.132 3.868 25 H 0.026 0.974 26 H 0.074 0.926 27 H 0.069 0.931 28 H 0.078 0.922 29 H 0.056 0.944 30 H 0.068 0.932 31 H 0.077 0.923 32 H 0.080 0.920 33 H 0.081 0.919 34 H 0.395 0.605 35 H 0.074 0.926 36 H 0.060 0.940 37 H 0.048 0.952 38 H 0.063 0.937 39 H 0.071 0.929 40 H 0.044 0.956 41 H 0.042 0.958 42 H 0.251 0.749 43 H 0.024 0.976 44 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.081 13.395 1.402 16.823 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 N -0.234 5.234 3 C -0.084 4.084 4 C -0.179 4.179 5 C -0.153 4.153 6 C -0.059 4.059 7 H 0.092 0.908 8 C 0.309 3.691 9 O -0.393 6.393 10 N -0.356 5.356 11 C 0.072 3.928 12 C -0.209 4.209 13 C -0.185 4.185 14 C 0.054 3.946 15 N -0.329 5.329 16 C -0.348 4.348 17 H 0.093 0.907 18 C -0.206 4.206 19 N -0.574 5.574 20 Si 0.741 3.259 21 H -0.213 1.213 22 H -0.217 1.217 23 H -0.212 1.212 24 C 0.005 3.995 25 H 0.044 0.956 26 H 0.092 0.908 27 H 0.088 0.912 28 H 0.097 0.903 29 H 0.074 0.926 30 H 0.087 0.913 31 H 0.096 0.904 32 H 0.099 0.901 33 H 0.100 0.900 34 H 0.228 0.772 35 H 0.093 0.907 36 H 0.079 0.921 37 H 0.067 0.933 38 H 0.081 0.919 39 H 0.090 0.910 40 H 0.062 0.938 41 H 0.061 0.939 42 H 0.061 0.939 43 H 0.042 0.958 44 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 10.105 12.819 2.589 16.527 hybrid contribution -1.510 0.352 -1.210 1.966 sum 8.595 13.171 1.380 15.788 Atomic orbital electron populations 1.22568 0.86839 1.02994 1.00269 1.63074 1.08208 1.13133 1.38942 1.22847 0.97909 0.89146 0.98508 1.22785 1.00111 0.96791 0.98243 1.22711 0.96372 0.94255 1.01956 1.22628 0.97519 0.93067 0.92705 0.90798 1.20077 0.76938 0.86352 0.85700 1.90626 1.48713 1.80432 1.19502 1.45811 1.72615 1.08094 1.09130 1.21429 0.94920 0.80167 0.96244 1.22002 0.95470 1.02090 1.01293 1.23221 1.01148 0.98605 0.95564 1.21129 0.84739 1.00268 0.88484 1.44455 1.02929 1.81401 1.04126 1.19022 0.81426 1.39498 0.94863 0.90708 1.24749 0.97989 1.02246 0.95609 1.69943 1.33490 1.54344 0.99637 0.86223 0.85135 0.77928 0.76650 1.21339 1.21664 1.21211 1.21895 0.89271 0.96116 0.92187 0.95564 0.90753 0.91179 0.90344 0.92586 0.91304 0.90450 0.90113 0.90047 0.77172 0.90713 0.92062 0.93303 0.91877 0.91002 0.93758 0.93943 0.93884 0.95841 0.92909 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.29 9.12 60.06 0.55 0.84 16 2 N -0.51 -7.20 4.69 -232.67 -1.09 -8.30 16 3 C 0.04 0.47 6.90 -2.84 -0.02 0.45 16 4 C -0.14 -1.25 6.93 -24.91 -0.17 -1.42 16 5 C -0.11 -1.21 6.52 -24.33 -0.16 -1.37 16 6 C 0.05 0.73 2.84 -67.08 -0.19 0.54 16 7 H 0.07 0.99 7.78 -51.92 -0.40 0.58 16 8 C 0.53 9.02 6.50 -10.99 -0.07 8.95 16 9 O -0.52 -10.67 13.40 5.56 0.07 -10.60 16 10 N -0.71 -11.74 5.18 -45.62 -0.24 -11.98 16 11 C 0.16 2.88 0.82 -129.67 -0.11 2.78 16 12 C -0.15 -2.38 8.57 37.16 0.32 -2.06 16 13 C -0.15 -2.64 5.98 -24.90 -0.15 -2.79 16 14 C 0.18 4.25 5.36 -3.07 -0.02 4.24 16 15 N -0.60 -15.65 3.40 -169.99 -0.58 -16.23 16 16 C -0.22 -6.28 10.28 -15.06 -0.15 -6.43 16 17 H 0.08 2.12 7.83 -52.48 -0.41 1.71 16 18 C -0.01 -0.30 5.49 -17.43 -0.10 -0.39 16 19 N -0.93 -27.14 10.31 55.49 0.57 -26.57 16 20 Si 0.91 22.51 29.55 -169.99 -5.02 17.49 16 21 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 22 H -0.29 -7.20 7.11 56.52 0.40 -6.80 16 23 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 24 C 0.13 2.98 6.14 -2.47 -0.02 2.96 16 25 H 0.03 0.32 8.10 -51.93 -0.42 -0.11 16 26 H 0.07 1.20 8.14 -51.93 -0.42 0.77 16 27 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 28 H 0.08 0.83 8.14 -51.93 -0.42 0.40 16 29 H 0.06 0.53 7.59 -51.93 -0.39 0.13 16 30 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 31 H 0.08 0.57 8.14 -51.93 -0.42 0.15 16 32 H 0.08 0.70 8.14 -51.93 -0.42 0.28 16 33 H 0.08 0.93 8.06 -51.93 -0.42 0.51 16 34 H 0.39 5.84 8.50 -40.82 -0.35 5.49 16 35 H 0.07 1.31 6.23 -51.93 -0.32 0.99 16 36 H 0.06 0.91 8.13 -51.93 -0.42 0.49 16 37 H 0.05 0.68 8.14 -51.93 -0.42 0.25 16 38 H 0.06 0.98 8.07 -51.93 -0.42 0.56 16 39 H 0.07 1.22 8.04 -51.93 -0.42 0.80 16 40 H 0.04 1.15 7.38 -51.93 -0.38 0.76 16 41 H 0.04 1.13 7.51 -51.93 -0.39 0.74 16 42 H 0.25 7.19 8.31 -40.82 -0.34 6.85 16 43 H 0.02 0.54 8.03 -51.93 -0.42 0.12 16 44 H 0.05 1.30 6.59 -51.93 -0.34 0.95 16 LS Contribution 342.44 15.07 5.16 5.16 Total: -1.00 -32.75 342.44 -9.01 -41.76 By element: Atomic # 1 Polarization: 10.57 SS G_CDS: -7.60 Total: 2.97 kcal Atomic # 6 Polarization: 6.57 SS G_CDS: -0.28 Total: 6.29 kcal Atomic # 7 Polarization: -61.74 SS G_CDS: -1.33 Total: -63.07 kcal Atomic # 8 Polarization: -10.67 SS G_CDS: 0.07 Total: -10.60 kcal Atomic # 14 Polarization: 22.51 SS G_CDS: -5.02 Total: 17.49 kcal Total LS contribution 5.16 Total: 5.16 kcal Total: -32.75 -9.01 -41.76 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001046189551.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.345 kcal (2) G-P(sol) polarization free energy of solvation -32.747 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.598 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.009 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.756 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.589 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds