Wall clock time and date at job start Tue Mar 31 2020 05:28:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46900 * 1 3 3 C 1.47443 * 111.00227 * 2 1 4 4 C 1.54312 * 107.23612 * 236.74273 * 3 2 1 5 5 C 1.55142 * 103.17714 * 337.62814 * 4 3 2 6 6 C 1.47844 * 110.99982 * 239.15844 * 2 1 3 7 7 H 1.09008 * 110.37208 * 27.53592 * 6 2 1 8 8 C 1.50697 * 110.37755 * 265.30738 * 6 2 1 9 9 O 1.21281 * 119.99709 * 341.45651 * 8 6 2 10 10 N 1.34772 * 120.00303 * 161.45451 * 8 6 2 11 11 C 1.46506 * 120.00067 * 180.02562 * 10 8 6 12 12 C 1.52999 * 110.88488 * 300.69791 * 11 10 8 13 13 C 1.55157 * 111.00313 * 176.81848 * 11 10 8 14 14 C 1.54321 * 102.94241 * 277.42667 * 13 11 10 15 15 N 1.47016 * 107.27203 * 337.80671 * 14 13 11 16 16 C 1.36939 * 125.65116 * 178.97734 * 15 14 13 17 17 H 1.08004 * 120.00429 * 179.97438 * 16 15 14 18 18 C 1.38815 * 119.99843 * 359.97438 * 16 15 14 19 19 N 1.31621 * 119.99792 * 0.02562 * 18 16 15 20 20 Si 1.86796 * 119.99896 * 179.97438 * 18 16 15 21 21 H 1.48492 * 109.47432 * 60.00496 * 20 18 16 22 22 H 1.48505 * 109.46756 * 180.02562 * 20 18 16 23 23 H 1.48504 * 109.47456 * 299.99948 * 20 18 16 24 24 C 1.47527 * 108.71668 * 358.94109 * 15 14 13 25 25 H 1.09001 * 109.47028 * 60.12449 * 1 2 3 26 26 H 1.08996 * 109.47194 * 180.12176 * 1 2 3 27 27 H 1.09002 * 109.47032 * 300.12355 * 1 2 3 28 28 H 1.08997 * 109.88254 * 117.33308 * 3 2 1 29 29 H 1.09001 * 110.02167 * 356.22840 * 3 2 1 30 30 H 1.09002 * 110.70596 * 96.10119 * 4 3 2 31 31 H 1.09005 * 110.70742 * 219.16269 * 4 3 2 32 32 H 1.09003 * 110.98867 * 153.83100 * 5 4 3 33 33 H 1.08996 * 110.99420 * 277.65160 * 5 4 3 34 34 H 0.96995 * 120.00334 * 359.97438 * 10 8 6 35 35 H 1.09000 * 109.47026 * 59.30295 * 12 11 10 36 36 H 1.08999 * 109.47299 * 179.29708 * 12 11 10 37 37 H 1.08994 * 109.46896 * 299.30043 * 12 11 10 38 38 H 1.09000 * 110.72445 * 35.78908 * 13 11 10 39 39 H 1.09003 * 110.71827 * 158.88599 * 13 11 10 40 40 H 1.08995 * 109.88376 * 97.22742 * 14 13 11 41 41 H 1.09005 * 109.87874 * 218.39150 * 14 13 11 42 42 H 0.97007 * 119.99872 * 179.97438 * 19 18 16 43 43 H 1.08991 * 110.37340 * 265.30557 * 24 15 14 44 44 H 1.09006 * 110.40953 * 142.94651 * 24 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9974 1.3765 0.0000 4 6 2.9159 1.5137 -1.2324 5 6 3.3089 0.0459 -1.5457 6 6 1.9988 -0.7076 -1.1851 7 1 1.2889 -0.6501 -2.0102 8 6 2.2948 -2.1463 -0.8483 9 8 2.4166 -2.4853 0.3098 10 7 2.4240 -3.0563 -1.8340 11 6 2.7112 -4.4552 -1.5065 12 6 4.0251 -4.5754 -0.7320 13 6 2.7378 -5.3318 -2.7864 14 6 1.2442 -5.6348 -3.0290 15 7 0.5495 -5.4616 -1.7449 16 6 -0.7950 -5.6179 -1.5374 17 1 -1.2104 -5.4678 -0.5518 18 6 -1.6240 -5.9695 -2.5938 19 7 -1.1177 -6.1530 -3.7948 20 14 -3.4580 -6.1835 -2.3105 21 1 -4.0338 -4.9090 -1.8115 22 1 -4.1158 -6.5577 -3.5883 23 1 -3.6822 -7.2547 -1.3067 24 6 1.5407 -5.0921 -0.7165 25 1 -0.3633 0.5119 -0.8911 26 1 -0.3633 -1.0276 0.0022 27 1 -0.3633 0.5158 0.8889 28 1 2.5697 1.5539 0.9106 29 1 1.1772 2.0911 -0.0674 30 1 2.3744 1.9547 -2.0694 31 1 3.7986 2.1059 -0.9913 32 1 3.5554 -0.0756 -2.6005 33 1 4.1343 -0.2808 -0.9133 34 1 2.3262 -2.7854 -2.7602 35 1 3.9585 -3.9958 0.1887 36 1 4.2098 -5.6220 -0.4899 37 1 4.8432 -4.1940 -1.3430 38 1 3.1599 -4.7776 -3.6248 39 1 3.2974 -6.2509 -2.6127 40 1 0.8400 -4.9407 -3.7658 41 1 1.1262 -6.6604 -3.3789 42 1 -1.6971 -6.3991 -4.5329 43 1 1.8817 -5.9788 -0.1823 44 1 1.1150 -4.3692 -0.0206 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001046189551.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:28:04 Heat of formation + Delta-G solvation = -22.104698 kcal Electronic energy + Delta-G solvation = -23676.252682 eV Core-core repulsion = 20435.345603 eV Total energy + Delta-G solvation = -3240.907079 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.184 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -41.39800 -39.80887 -38.24823 -35.60226 -33.70802 -32.98095 -31.88122 -30.49784 -29.85117 -27.51545 -26.66842 -25.46814 -23.79607 -22.17716 -22.01624 -20.99930 -20.38100 -18.97101 -18.18739 -17.25408 -16.83018 -16.55152 -16.16426 -15.83585 -15.53448 -15.41074 -14.85235 -14.41677 -14.35779 -14.12606 -13.87107 -13.62337 -13.52242 -13.38482 -13.14250 -12.98508 -12.83396 -12.75147 -12.50043 -12.27096 -12.10734 -12.08490 -12.03799 -11.95310 -11.68597 -11.64027 -11.50445 -10.71697 -10.44768 -9.89855 -9.28007 -8.86948 -7.86634 -5.20199 1.42053 1.44751 1.51361 1.76830 2.21325 2.47245 3.10577 3.31232 3.54860 3.64262 3.66827 3.74169 3.99880 4.07085 4.12624 4.20311 4.21951 4.38499 4.42042 4.58850 4.64750 4.70744 4.77671 4.85227 4.88095 4.90112 4.93447 4.94368 4.96346 5.03698 5.07571 5.10450 5.31032 5.38419 5.41269 5.65790 5.72164 5.80233 5.88575 6.06961 6.19215 6.77326 7.11075 7.47932 7.76626 8.41419 9.22995 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.017134 B = 0.005645 C = 0.004724 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1633.828738 B = 4958.962289 C = 5925.863540 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 N -0.538 5.538 3 C 0.040 3.960 4 C -0.131 4.131 5 C -0.108 4.108 6 C 0.053 3.947 7 H 0.078 0.922 8 C 0.520 3.480 9 O -0.558 6.558 10 N -0.702 5.702 11 C 0.169 3.831 12 C -0.139 4.139 13 C -0.128 4.128 14 C 0.186 3.814 15 N -0.620 5.620 16 C -0.243 4.243 17 H 0.065 0.935 18 C -0.057 4.057 19 N -0.945 5.945 20 Si 0.973 3.027 21 H -0.281 1.281 22 H -0.287 1.287 23 H -0.281 1.281 24 C 0.130 3.870 25 H 0.041 0.959 26 H 0.036 0.964 27 H 0.082 0.918 28 H 0.077 0.923 29 H 0.070 0.930 30 H 0.083 0.917 31 H 0.097 0.903 32 H 0.104 0.896 33 H 0.071 0.929 34 H 0.405 0.595 35 H 0.055 0.945 36 H 0.071 0.929 37 H 0.077 0.923 38 H 0.098 0.902 39 H 0.090 0.910 40 H 0.018 0.982 41 H 0.008 0.992 42 H 0.248 0.752 43 H 0.021 0.979 44 H 0.024 0.976 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.390 15.034 0.521 18.869 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 N -0.263 5.263 3 C -0.087 4.087 4 C -0.169 4.169 5 C -0.146 4.146 6 C -0.059 4.059 7 H 0.096 0.904 8 C 0.306 3.694 9 O -0.436 6.436 10 N -0.354 5.354 11 C 0.082 3.918 12 C -0.198 4.198 13 C -0.166 4.166 14 C 0.061 3.939 15 N -0.346 5.346 16 C -0.372 4.372 17 H 0.083 0.917 18 C -0.251 4.251 19 N -0.594 5.594 20 Si 0.801 3.199 21 H -0.207 1.207 22 H -0.213 1.213 23 H -0.207 1.207 24 C 0.003 3.997 25 H 0.060 0.940 26 H 0.055 0.945 27 H 0.101 0.899 28 H 0.095 0.905 29 H 0.089 0.911 30 H 0.102 0.898 31 H 0.116 0.884 32 H 0.123 0.877 33 H 0.090 0.910 34 H 0.241 0.759 35 H 0.074 0.926 36 H 0.090 0.910 37 H 0.096 0.904 38 H 0.117 0.883 39 H 0.108 0.892 40 H 0.037 0.963 41 H 0.026 0.974 42 H 0.057 0.943 43 H 0.039 0.961 44 H 0.043 0.957 Dipole moment (debyes) X Y Z Total from point charges 11.436 14.481 1.702 18.530 hybrid contribution -1.955 -0.180 -0.866 2.145 sum 9.481 14.301 0.836 17.179 Atomic orbital electron populations 1.22476 0.87127 1.00910 1.01652 1.62986 1.08265 1.15453 1.39594 1.22930 0.98747 0.87413 0.99574 1.22778 1.00582 0.95848 0.97673 1.22741 0.94031 0.94702 1.03145 1.22646 0.99518 0.91068 0.92671 0.90425 1.20788 0.75730 0.87799 0.85085 1.90605 1.50479 1.81355 1.21126 1.45804 1.72337 1.07452 1.09787 1.21295 0.94081 0.80780 0.95671 1.21909 0.94682 1.02695 1.00492 1.23094 0.96974 0.99892 0.96652 1.20933 0.88400 0.97499 0.87022 1.44697 1.02814 1.81370 1.05735 1.19266 0.83250 1.39939 0.94758 0.91667 1.25502 1.02045 1.02121 0.95406 1.70140 1.34569 1.54644 1.00048 0.85243 0.80111 0.77946 0.76577 1.20733 1.21312 1.20694 1.21984 0.90316 0.95592 0.91781 0.94014 0.94490 0.89942 0.90497 0.91140 0.89841 0.88402 0.87745 0.91026 0.75934 0.92569 0.91015 0.90365 0.88313 0.89189 0.96347 0.97420 0.94262 0.96119 0.95737 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.72 9.12 127.69 1.16 1.89 16 2 N -0.54 -14.87 4.69 -890.04 -4.18 -19.05 16 3 C 0.04 0.77 6.90 86.64 0.60 1.37 16 4 C -0.13 -1.88 6.93 31.77 0.22 -1.66 16 5 C -0.11 -1.98 6.52 32.15 0.21 -1.77 16 6 C 0.05 1.40 2.84 44.81 0.13 1.53 16 7 H 0.08 1.98 7.78 -2.38 -0.02 1.97 16 8 C 0.52 17.81 6.50 87.66 0.57 18.38 16 9 O -0.56 -23.52 13.40 -3.03 -0.04 -23.56 16 10 N -0.70 -22.76 5.18 -416.65 -2.16 -24.92 16 11 C 0.17 5.96 0.82 4.99 0.00 5.96 16 12 C -0.14 -4.14 8.57 71.98 0.62 -3.53 16 13 C -0.13 -4.36 5.98 31.78 0.19 -4.17 16 14 C 0.19 8.99 5.36 86.73 0.47 9.45 16 15 N -0.62 -33.12 3.40 -691.74 -2.35 -35.47 16 16 C -0.24 -14.35 10.28 84.03 0.86 -13.48 16 17 H 0.07 3.85 7.83 -2.91 -0.02 3.83 16 18 C -0.06 -3.33 5.49 84.86 0.47 -2.87 16 19 N -0.95 -56.55 10.31 21.65 0.22 -56.33 16 20 Si 0.97 46.98 29.55 68.60 2.03 49.01 16 21 H -0.28 -13.23 7.11 99.48 0.71 -12.53 16 22 H -0.29 -13.64 7.11 99.48 0.71 -12.93 16 23 H -0.28 -13.26 7.11 99.48 0.71 -12.55 16 24 C 0.13 5.99 6.14 86.84 0.53 6.52 16 25 H 0.04 0.97 8.10 -2.39 -0.02 0.95 16 26 H 0.04 1.24 8.14 -2.39 -0.02 1.23 16 27 H 0.08 1.95 8.14 -2.39 -0.02 1.93 16 28 H 0.08 1.49 8.14 -2.39 -0.02 1.47 16 29 H 0.07 1.14 7.59 -2.39 -0.02 1.12 16 30 H 0.08 1.00 8.14 -2.39 -0.02 0.98 16 31 H 0.10 1.05 8.14 -2.38 -0.02 1.03 16 32 H 0.10 1.43 8.14 -2.39 -0.02 1.41 16 33 H 0.07 1.48 8.06 -2.39 -0.02 1.46 16 34 H 0.41 11.35 8.50 -92.71 -0.79 10.56 16 35 H 0.06 1.92 6.23 -2.39 -0.01 1.90 16 36 H 0.07 1.97 8.13 -2.39 -0.02 1.95 16 37 H 0.08 1.89 8.14 -2.39 -0.02 1.87 16 38 H 0.10 2.71 8.07 -2.39 -0.02 2.69 16 39 H 0.09 2.80 8.04 -2.39 -0.02 2.78 16 40 H 0.02 0.97 7.38 -2.39 -0.02 0.95 16 41 H 0.01 0.41 7.51 -2.38 -0.02 0.40 16 42 H 0.25 14.42 8.31 -92.70 -0.77 13.64 16 43 H 0.02 0.97 8.03 -2.39 -0.02 0.95 16 44 H 0.02 1.26 6.59 -2.38 -0.02 1.24 16 Total: -1.00 -74.13 342.44 -0.26 -74.39 By element: Atomic # 1 Polarization: 18.12 SS G_CDS: 0.19 Total: 18.30 kcal Atomic # 6 Polarization: 11.60 SS G_CDS: 6.03 Total: 17.63 kcal Atomic # 7 Polarization: -127.31 SS G_CDS: -8.46 Total: -135.77 kcal Atomic # 8 Polarization: -23.52 SS G_CDS: -0.04 Total: -23.56 kcal Atomic # 14 Polarization: 46.98 SS G_CDS: 2.03 Total: 49.01 kcal Total: -74.13 -0.26 -74.39 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001046189551.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.282 kcal (2) G-P(sol) polarization free energy of solvation -74.127 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.844 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.260 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.387 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.105 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds