Wall clock time and date at job start Tue Mar 31 2020 05:28:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46905 * 1 3 3 C 1.48529 * 110.99979 * 2 1 4 4 C 1.54937 * 103.22798 * 159.71684 * 3 2 1 5 5 C 1.54593 * 102.92131 * 322.58891 * 4 3 2 6 6 C 1.47903 * 110.99750 * 117.39753 * 2 1 3 7 7 H 1.09003 * 110.08100 * 333.59768 * 6 2 1 8 8 C 1.50691 * 109.91815 * 94.80590 * 6 2 1 9 9 O 1.21287 * 120.00233 * 17.58285 * 8 6 2 10 10 N 1.34781 * 120.00078 * 197.59154 * 8 6 2 11 11 C 1.46497 * 120.00063 * 179.97438 * 10 8 6 12 12 C 1.53001 * 110.88668 * 56.11910 * 11 10 8 13 13 C 1.55157 * 111.00410 * 179.97438 * 11 10 8 14 14 C 1.54325 * 102.94184 * 82.61446 * 13 11 10 15 15 N 1.47022 * 107.26948 * 22.19107 * 14 13 11 16 16 C 1.36945 * 125.64832 * 181.02381 * 15 14 13 17 17 H 1.07997 * 119.99756 * 180.02562 * 16 15 14 18 18 C 1.38805 * 119.99878 * 0.02562 * 16 15 14 19 19 N 1.31624 * 120.00257 * 0.02562 * 18 16 15 20 20 Si 1.86803 * 119.99929 * 179.97438 * 18 16 15 21 21 H 1.48496 * 109.47187 * 179.97438 * 20 18 16 22 22 H 1.48494 * 109.47141 * 300.00154 * 20 18 16 23 23 H 1.48498 * 109.47018 * 60.00200 * 20 18 16 24 24 C 1.47423 * 108.70390 * 1.29074 * 15 14 13 25 25 H 1.09000 * 109.47417 * 302.60526 * 1 2 3 26 26 H 1.09005 * 109.46846 * 62.60499 * 1 2 3 27 27 H 1.08995 * 109.46948 * 182.59961 * 1 2 3 28 28 H 1.09007 * 110.66925 * 41.28613 * 3 2 1 29 29 H 1.08995 * 110.81677 * 278.22346 * 3 2 1 30 30 H 1.08997 * 110.72897 * 204.23287 * 4 3 2 31 31 H 1.08996 * 110.72060 * 80.94581 * 4 3 2 32 32 H 1.09002 * 110.30929 * 263.03692 * 5 4 3 33 33 H 1.08998 * 110.30941 * 140.87216 * 5 4 3 34 34 H 0.97000 * 119.99901 * 359.97438 * 10 8 6 35 35 H 1.08996 * 109.47690 * 183.87582 * 12 11 10 36 36 H 1.08999 * 109.46882 * 303.87987 * 12 11 10 37 37 H 1.09005 * 109.47260 * 63.87826 * 12 11 10 38 38 H 1.09000 * 110.72140 * 324.25276 * 13 11 10 39 39 H 1.08998 * 110.72520 * 200.97595 * 13 11 10 40 40 H 1.09002 * 109.88274 * 262.77538 * 14 13 11 41 41 H 1.09000 * 110.01178 * 141.68100 * 14 13 11 42 42 H 0.97001 * 119.99885 * 179.97438 * 19 18 16 43 43 H 1.09000 * 110.37068 * 94.48354 * 24 15 14 44 44 H 1.09005 * 110.36651 * 216.80519 * 24 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 2.0013 1.3866 0.0000 4 6 3.4491 1.2106 0.5229 5 6 3.2982 0.1053 1.5931 6 6 1.9990 -0.6354 1.2259 7 1 1.2770 -0.5432 2.0374 8 6 2.2938 -2.0898 0.9640 9 8 2.3970 -2.4921 -0.1755 10 7 2.4426 -2.9437 1.9962 11 6 2.7286 -4.3578 1.7415 12 6 3.9871 -4.5142 0.8856 13 6 2.8593 -5.1469 3.0710 14 6 1.3915 -5.4512 3.4380 15 7 0.6061 -5.3721 2.1977 16 6 -0.7469 -5.5582 2.0965 17 1 -1.2324 -5.4789 1.1351 18 6 -1.4941 -5.8487 3.2296 19 7 -0.9024 -5.9449 4.4014 20 14 -3.3398 -6.1018 3.0916 21 1 -3.9005 -6.3983 4.4343 22 1 -3.9695 -4.8696 2.5528 23 1 -3.6165 -7.2393 2.1780 24 6 1.5172 -5.0656 1.0799 25 1 -0.3634 0.5537 0.8657 26 1 -0.3633 0.4729 -0.9125 27 1 -0.3633 -1.0266 0.0466 28 1 1.4237 2.0205 0.6730 29 1 2.0041 1.8005 -1.0083 30 1 3.8123 2.1351 0.9718 31 1 4.1115 0.8836 -0.2786 32 1 3.2136 0.5485 2.5853 33 1 4.1469 -0.5775 1.5541 34 1 2.3604 -2.6220 2.9075 35 1 4.1397 -5.5681 0.6529 36 1 3.8691 -3.9511 -0.0402 37 1 4.8492 -4.1349 1.4343 38 1 3.3295 -4.5331 3.8393 39 1 3.4179 -6.0703 2.9182 40 1 1.0281 -4.7145 4.1545 41 1 1.3131 -6.4518 3.8633 42 1 -1.4247 -6.1475 5.1932 43 1 1.8346 -5.9842 0.5864 44 1 1.0320 -4.3991 0.3668 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001046189552.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:28:06 Heat of formation + Delta-G solvation = -21.109812 kcal Electronic energy + Delta-G solvation = -23681.550471 eV Core-core repulsion = 20440.686533 eV Total energy + Delta-G solvation = -3240.863938 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.184 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -41.43661 -39.79362 -38.22234 -35.59733 -33.73639 -33.06808 -31.89593 -30.49382 -29.82120 -27.51684 -26.64802 -25.46517 -23.70235 -22.13550 -22.07646 -21.09594 -20.36117 -18.99396 -18.16064 -17.19127 -16.89483 -16.65233 -16.22074 -15.78359 -15.46697 -15.21040 -14.97635 -14.61951 -14.39486 -14.19728 -13.86572 -13.54343 -13.48013 -13.35186 -13.10481 -12.89453 -12.82332 -12.75248 -12.50971 -12.30332 -12.11239 -12.04817 -11.99221 -11.96378 -11.70585 -11.67617 -11.49052 -10.72152 -10.43342 -9.91023 -9.38954 -8.87378 -7.86896 -5.20732 1.42145 1.44803 1.51427 1.77245 2.20542 2.47037 3.10544 3.30979 3.55285 3.64716 3.66534 3.74513 3.93675 4.05981 4.13517 4.20946 4.28832 4.38007 4.44435 4.61332 4.64076 4.70159 4.75204 4.84905 4.86672 4.87608 4.91902 4.93011 5.00498 5.02443 5.09693 5.12447 5.27361 5.38668 5.41100 5.65060 5.71355 5.78368 5.83796 6.01032 6.18909 6.76283 7.10613 7.46582 7.76154 8.40892 9.22692 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.017862 B = 0.005537 C = 0.004676 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1567.194461 B = 5055.334779 C = 5986.951476 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.022 3.978 2 N -0.525 5.525 3 C 0.035 3.965 4 C -0.116 4.116 5 C -0.113 4.113 6 C 0.047 3.953 7 H 0.075 0.925 8 C 0.519 3.481 9 O -0.557 6.557 10 N -0.703 5.703 11 C 0.170 3.830 12 C -0.142 4.142 13 C -0.128 4.128 14 C 0.186 3.814 15 N -0.620 5.620 16 C -0.244 4.244 17 H 0.066 0.934 18 C -0.057 4.057 19 N -0.945 5.945 20 Si 0.973 3.027 21 H -0.288 1.288 22 H -0.281 1.281 23 H -0.281 1.281 24 C 0.131 3.869 25 H 0.042 0.958 26 H 0.084 0.916 27 H 0.037 0.963 28 H 0.061 0.939 29 H 0.090 0.910 30 H 0.104 0.896 31 H 0.067 0.933 32 H 0.102 0.898 33 H 0.072 0.928 34 H 0.405 0.595 35 H 0.070 0.930 36 H 0.060 0.940 37 H 0.076 0.924 38 H 0.098 0.902 39 H 0.089 0.911 40 H 0.019 0.981 41 H 0.008 0.992 42 H 0.248 0.752 43 H 0.022 0.978 44 H 0.021 0.979 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.137 15.035 -2.567 18.886 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 N -0.249 5.249 3 C -0.092 4.092 4 C -0.154 4.154 5 C -0.151 4.151 6 C -0.065 4.065 7 H 0.093 0.907 8 C 0.305 3.695 9 O -0.434 6.434 10 N -0.354 5.354 11 C 0.082 3.918 12 C -0.200 4.200 13 C -0.166 4.166 14 C 0.061 3.939 15 N -0.346 5.346 16 C -0.373 4.373 17 H 0.084 0.916 18 C -0.250 4.250 19 N -0.594 5.594 20 Si 0.802 3.198 21 H -0.213 1.213 22 H -0.207 1.207 23 H -0.207 1.207 24 C 0.005 3.995 25 H 0.060 0.940 26 H 0.103 0.897 27 H 0.056 0.944 28 H 0.079 0.921 29 H 0.108 0.892 30 H 0.122 0.878 31 H 0.085 0.915 32 H 0.121 0.879 33 H 0.091 0.909 34 H 0.240 0.760 35 H 0.088 0.912 36 H 0.079 0.921 37 H 0.095 0.905 38 H 0.116 0.884 39 H 0.108 0.892 40 H 0.037 0.963 41 H 0.026 0.974 42 H 0.057 0.943 43 H 0.040 0.960 44 H 0.040 0.960 Dipole moment (debyes) X Y Z Total from point charges 11.182 14.405 -3.724 18.612 hybrid contribution -1.967 -0.211 1.062 2.245 sum 9.215 14.194 -2.662 17.131 Atomic orbital electron populations 1.22462 0.87331 1.00901 1.02003 1.64275 1.08485 1.16362 1.35794 1.23361 0.95646 0.87943 1.02251 1.22489 0.95952 0.98993 0.97920 1.22379 0.94172 0.97603 1.00992 1.22403 0.99714 0.91419 0.92951 0.90693 1.20831 0.75692 0.88295 0.84647 1.90596 1.50616 1.79006 1.23184 1.45804 1.72354 1.07779 1.09480 1.21318 0.93983 0.80452 0.96035 1.21943 0.95237 1.02668 1.00195 1.23094 0.97156 1.00533 0.95845 1.20944 0.87637 0.97739 0.87582 1.44676 1.02969 1.83136 1.03823 1.19268 0.83182 1.40923 0.93906 0.91604 1.25505 1.02141 1.02259 0.95141 1.70139 1.35037 1.56015 0.98196 0.85238 0.80119 0.78007 0.76480 1.21334 1.20710 1.20691 1.22004 0.91200 0.95693 0.90650 0.93951 0.89745 0.94357 0.92118 0.89181 0.87808 0.91460 0.87948 0.90894 0.75982 0.91155 0.92113 0.90506 0.88360 0.89215 0.96320 0.97382 0.94253 0.96018 0.96045 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.57 9.40 127.69 1.20 1.77 16 2 N -0.52 -14.28 4.75 -888.44 -4.22 -18.51 16 3 C 0.03 0.65 6.56 86.65 0.57 1.22 16 4 C -0.12 -1.84 7.06 31.80 0.22 -1.62 16 5 C -0.11 -2.08 6.56 31.47 0.21 -1.87 16 6 C 0.05 1.25 2.87 44.31 0.13 1.38 16 7 H 0.08 1.92 7.74 -2.39 -0.02 1.91 16 8 C 0.52 17.70 6.25 87.65 0.55 18.25 16 9 O -0.56 -23.21 13.39 -3.05 -0.04 -23.25 16 10 N -0.70 -22.91 5.19 -416.31 -2.16 -25.07 16 11 C 0.17 6.00 0.82 5.07 0.00 6.01 16 12 C -0.14 -4.28 8.59 71.98 0.62 -3.67 16 13 C -0.13 -4.39 5.97 31.78 0.19 -4.20 16 14 C 0.19 8.96 5.37 86.73 0.47 9.42 16 15 N -0.62 -33.02 3.39 -691.55 -2.35 -35.37 16 16 C -0.24 -14.33 10.28 84.03 0.86 -13.47 16 17 H 0.07 3.87 7.83 -2.91 -0.02 3.85 16 18 C -0.06 -3.30 5.49 84.86 0.47 -2.84 16 19 N -0.95 -56.43 10.31 21.65 0.22 -56.21 16 20 Si 0.97 46.83 29.55 68.60 2.03 48.86 16 21 H -0.29 -13.62 7.11 99.48 0.71 -12.91 16 22 H -0.28 -13.17 7.11 99.48 0.71 -12.46 16 23 H -0.28 -13.21 7.11 99.48 0.71 -12.51 16 24 C 0.13 6.04 6.18 86.93 0.54 6.57 16 25 H 0.04 0.97 8.01 -2.39 -0.02 0.95 16 26 H 0.08 1.95 8.14 -2.38 -0.02 1.93 16 27 H 0.04 1.26 8.14 -2.39 -0.02 1.24 16 28 H 0.06 0.94 7.96 -2.38 -0.02 0.93 16 29 H 0.09 1.56 8.14 -2.39 -0.02 1.54 16 30 H 0.10 1.05 8.14 -2.39 -0.02 1.03 16 31 H 0.07 1.22 8.14 -2.39 -0.02 1.20 16 32 H 0.10 1.35 8.14 -2.39 -0.02 1.33 16 33 H 0.07 1.42 7.68 -2.39 -0.02 1.40 16 34 H 0.40 11.59 8.51 -92.71 -0.79 10.80 16 35 H 0.07 1.98 8.07 -2.39 -0.02 1.96 16 36 H 0.06 2.10 5.92 -2.39 -0.01 2.09 16 37 H 0.08 1.89 8.14 -2.38 -0.02 1.87 16 38 H 0.10 2.73 8.09 -2.39 -0.02 2.71 16 39 H 0.09 2.81 8.04 -2.39 -0.02 2.79 16 40 H 0.02 0.98 7.38 -2.39 -0.02 0.96 16 41 H 0.01 0.44 7.50 -2.39 -0.02 0.42 16 42 H 0.25 14.40 8.31 -92.71 -0.77 13.62 16 43 H 0.02 1.01 7.99 -2.39 -0.02 1.00 16 44 H 0.02 1.09 6.89 -2.38 -0.02 1.07 16 Total: -1.00 -73.55 342.21 -0.32 -73.87 By element: Atomic # 1 Polarization: 18.53 SS G_CDS: 0.18 Total: 18.72 kcal Atomic # 6 Polarization: 10.94 SS G_CDS: 6.02 Total: 16.96 kcal Atomic # 7 Polarization: -126.65 SS G_CDS: -8.51 Total: -135.16 kcal Atomic # 8 Polarization: -23.21 SS G_CDS: -0.04 Total: -23.25 kcal Atomic # 14 Polarization: 46.83 SS G_CDS: 2.03 Total: 48.86 kcal Total: -73.55 -0.32 -73.87 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001046189552.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.759 kcal (2) G-P(sol) polarization free energy of solvation -73.551 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.792 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.318 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.869 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.110 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds