Wall clock time and date at job start Tue Mar 31 2020 05:28:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46898 * 1 3 3 C 1.48559 * 111.00247 * 2 1 4 4 C 1.54376 * 104.59514 * 200.95883 * 3 2 1 5 5 C 1.54257 * 105.06142 * 23.85437 * 4 3 2 6 6 H 1.09008 * 110.32518 * 240.99980 * 5 4 3 7 7 C 1.50703 * 110.32705 * 118.89572 * 5 4 3 8 8 O 1.21281 * 119.99800 * 1.42438 * 7 5 4 9 9 N 1.34775 * 120.00130 * 181.42453 * 7 5 4 10 10 C 1.46495 * 119.99946 * 179.97438 * 9 7 5 11 11 C 1.52997 * 110.64304 * 61.69123 * 10 9 7 12 12 C 1.55161 * 110.87268 * 184.93725 * 10 9 7 13 13 C 1.55135 * 101.48567 * 82.76848 * 12 10 9 14 14 N 1.47422 * 104.72243 * 37.29308 * 13 12 10 15 15 C 1.36938 * 125.64810 * 155.81774 * 14 13 12 16 16 H 1.07999 * 120.00291 * 190.08344 * 15 14 13 17 17 C 1.38815 * 119.99697 * 9.80476 * 15 14 13 18 18 N 1.31617 * 120.00027 * 9.60119 * 17 15 14 19 19 Si 1.86797 * 119.99629 * 189.60109 * 17 15 14 20 20 H 1.48503 * 109.47317 * 94.11739 * 19 17 15 21 21 H 1.48504 * 109.47004 * 214.11628 * 19 17 15 22 22 H 1.48504 * 109.47440 * 334.11773 * 19 17 15 23 23 C 1.47025 * 108.70473 * 335.55732 * 14 13 12 24 24 C 1.48722 * 111.01581 * 244.48700 * 2 1 3 25 25 H 1.08997 * 109.46884 * 60.12553 * 1 2 3 26 26 H 1.08998 * 109.47395 * 180.12696 * 1 2 3 27 27 H 1.08996 * 109.47071 * 300.12497 * 1 2 3 28 28 H 1.08994 * 110.40951 * 82.18091 * 3 2 1 29 29 H 1.09000 * 110.41121 * 319.73915 * 3 2 1 30 30 H 1.08998 * 110.32640 * 264.95837 * 4 3 2 31 31 H 1.09003 * 110.40818 * 142.79349 * 4 3 2 32 32 H 0.97003 * 119.99989 * 0.02562 * 9 7 5 33 33 H 1.09003 * 109.46697 * 298.31096 * 11 10 9 34 34 H 1.09002 * 109.46998 * 58.30933 * 11 10 9 35 35 H 1.08999 * 109.47117 * 178.31261 * 11 10 9 36 36 H 1.08992 * 111.00484 * 201.00793 * 12 10 9 37 37 H 1.08996 * 111.00573 * 324.82157 * 12 10 9 38 38 H 1.09005 * 110.49453 * 278.45718 * 13 12 10 39 39 H 1.08994 * 110.34033 * 156.06212 * 13 12 10 40 40 H 0.97001 * 119.99777 * 180.02562 * 18 17 15 41 41 H 1.09002 * 109.88111 * 120.70122 * 23 14 13 42 42 H 1.09002 * 109.87902 * 241.86753 * 23 14 13 43 43 H 1.09005 * 110.38715 * 40.24814 * 24 2 1 44 44 H 1.08998 * 110.51362 * 277.75286 * 24 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 2.0014 1.3869 0.0000 4 6 3.4433 1.2500 -0.5344 5 6 3.4432 -0.0539 -1.3585 6 1 4.1496 -0.7687 -0.9362 7 6 3.7895 0.2355 -2.7964 8 8 4.0435 1.3698 -3.1424 9 7 3.8169 -0.7662 -3.6977 10 6 4.1529 -0.4847 -5.0955 11 6 5.5698 0.0819 -5.2061 12 6 4.0016 -1.7589 -5.9678 13 6 2.4782 -1.7536 -6.2609 14 7 2.1353 -0.3305 -6.4357 15 6 1.0668 0.1519 -7.1434 16 1 0.9893 1.2089 -7.3508 17 6 0.0862 -0.7186 -7.5992 18 7 0.0791 -1.9713 -7.1956 19 14 -1.2231 -0.1119 -8.7852 20 1 -0.7975 -0.3949 -10.1795 21 1 -2.5042 -0.8098 -8.5075 22 1 -1.4087 1.3512 -8.6117 23 6 3.1269 0.4849 -5.7192 24 6 2.0023 -0.5980 -1.2529 25 1 -0.3633 0.5119 -0.8911 26 1 -0.3634 -1.0276 0.0023 27 1 -0.3633 0.5158 0.8888 28 1 2.0079 1.7915 1.0120 29 1 1.4099 2.0212 -0.6602 30 1 4.1483 1.1747 0.2934 31 1 3.6954 2.0993 -1.1695 32 1 3.6133 -1.6733 -3.4210 33 1 5.6286 1.0226 -4.6587 34 1 6.2795 -0.6294 -4.7835 35 1 5.8106 0.2560 -6.2548 36 1 4.5801 -1.6737 -6.8876 37 1 4.2878 -2.6505 -5.4100 38 1 1.9265 -2.1763 -5.4212 39 1 2.2661 -2.3099 -7.1739 40 1 -0.6059 -2.5797 -7.5144 41 1 3.6279 1.1566 -6.4163 42 1 2.6361 1.0604 -4.9343 43 1 1.4105 -0.2753 -2.1096 44 1 2.0108 -1.6857 -1.1836 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001046828840.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:28:10 Heat of formation + Delta-G solvation = -3.972762 kcal Electronic energy + Delta-G solvation = -23577.119959 eV Core-core repulsion = 20336.999140 eV Total energy + Delta-G solvation = -3240.120819 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.184 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -40.30778 -38.52318 -37.00324 -34.00228 -32.48047 -31.70340 -30.10753 -28.81973 -28.59620 -25.91236 -25.66066 -23.73622 -22.41347 -21.23615 -20.45855 -19.70785 -18.94036 -17.35486 -16.76032 -16.07078 -15.49224 -14.97753 -14.79735 -14.66923 -14.16370 -13.86294 -13.61520 -13.40919 -13.00141 -12.75926 -12.69194 -12.24303 -12.04131 -11.75324 -11.60571 -11.58562 -11.54000 -11.33091 -11.16540 -10.95212 -10.84333 -10.71515 -10.40704 -10.37286 -10.08252 -9.98240 -9.69711 -9.27667 -8.64292 -8.58440 -8.56146 -6.78107 -5.75075 -3.06192 2.90939 3.39367 3.43420 3.45345 3.47026 4.02522 4.49940 4.53939 4.60982 4.89664 5.09179 5.22642 5.28763 5.35033 5.38728 5.44392 5.47433 5.51507 5.55065 5.64835 5.73142 5.81818 5.84490 5.90732 6.01480 6.05712 6.11591 6.16241 6.21250 6.32476 6.43377 6.50816 6.69177 6.71119 6.84139 6.88403 7.16105 7.45634 7.53524 7.76516 7.87416 8.26104 8.55769 9.20447 9.82041 10.49880 11.38333 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.015446 B = 0.005680 C = 0.004653 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1812.304206 B = 4928.518317 C = 6015.828499 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.011 3.989 2 N -0.515 5.515 3 C 0.030 3.970 4 C -0.115 4.115 5 C -0.114 4.114 6 H 0.102 0.898 7 C 0.521 3.479 8 O -0.536 6.536 9 N -0.706 5.706 10 C 0.159 3.841 11 C -0.149 4.149 12 C -0.148 4.148 13 C 0.175 3.825 14 N -0.603 5.603 15 C -0.224 4.224 16 H 0.075 0.925 17 C -0.008 4.008 18 N -0.921 5.921 19 Si 0.909 3.091 20 H -0.289 1.289 21 H -0.291 1.291 22 H -0.281 1.281 23 C 0.137 3.863 24 C 0.041 3.959 25 H 0.033 0.967 26 H 0.070 0.930 27 H 0.068 0.932 28 H 0.081 0.919 29 H 0.047 0.953 30 H 0.073 0.927 31 H 0.095 0.905 32 H 0.397 0.603 33 H 0.070 0.930 34 H 0.049 0.951 35 H 0.063 0.937 36 H 0.076 0.924 37 H 0.064 0.936 38 H 0.025 0.975 39 H 0.070 0.930 40 H 0.252 0.748 41 H 0.029 0.971 42 H 0.033 0.967 43 H 0.057 0.943 44 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.580 0.338 12.885 14.954 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 N -0.239 5.239 3 C -0.098 4.098 4 C -0.153 4.153 5 C -0.136 4.136 6 H 0.120 0.880 7 C 0.306 3.694 8 O -0.413 6.413 9 N -0.356 5.356 10 C 0.073 3.927 11 C -0.207 4.207 12 C -0.187 4.187 13 C 0.049 3.951 14 N -0.329 5.329 15 C -0.352 4.352 16 H 0.093 0.907 17 C -0.205 4.205 18 N -0.568 5.568 19 Si 0.740 3.260 20 H -0.216 1.216 21 H -0.218 1.218 22 H -0.206 1.206 23 C 0.011 3.989 24 C -0.087 4.087 25 H 0.051 0.949 26 H 0.089 0.911 27 H 0.087 0.913 28 H 0.099 0.901 29 H 0.065 0.935 30 H 0.092 0.908 31 H 0.113 0.887 32 H 0.231 0.769 33 H 0.089 0.911 34 H 0.068 0.932 35 H 0.082 0.918 36 H 0.094 0.906 37 H 0.082 0.918 38 H 0.043 0.957 39 H 0.088 0.912 40 H 0.062 0.938 41 H 0.047 0.953 42 H 0.051 0.949 43 H 0.075 0.925 44 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges 7.711 0.787 13.001 15.136 hybrid contribution -1.276 0.143 -1.186 1.747 sum 6.436 0.930 11.815 13.487 Atomic orbital electron populations 1.22517 0.87779 1.02447 1.00997 1.65436 1.08468 1.15487 1.34538 1.23155 0.95441 0.90152 1.01002 1.22307 0.96380 0.97481 0.99115 1.22046 0.98492 0.99927 0.93112 0.87959 1.20320 0.76653 0.85145 0.87244 1.90632 1.48967 1.21441 1.80295 1.45969 1.70306 1.10628 1.08708 1.21313 0.94383 0.96985 0.79986 1.22030 0.94732 1.01790 1.02158 1.23384 1.01752 0.94904 0.98686 1.21434 0.86629 0.86562 1.00426 1.44492 1.28268 1.01220 1.58926 1.19046 0.97698 0.93093 1.25402 0.90740 1.24786 0.98245 0.96242 1.01185 1.69941 1.35949 1.04202 1.46734 0.86133 0.80996 0.77819 0.81042 1.21595 1.21800 1.20641 1.21597 0.90200 0.92907 0.94243 1.23123 0.93235 1.00390 0.91982 0.94877 0.91083 0.91337 0.90068 0.93505 0.90827 0.88681 0.76862 0.91070 0.93161 0.91843 0.90579 0.91785 0.95702 0.91199 0.93809 0.95307 0.94875 0.92494 0.89365 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.13 9.53 60.06 0.57 0.70 16 2 N -0.52 -6.39 5.66 -238.10 -1.35 -7.74 16 3 C 0.03 0.36 6.50 -2.18 -0.01 0.35 16 4 C -0.11 -1.39 6.59 -25.35 -0.17 -1.55 16 5 C -0.11 -1.43 3.44 -90.39 -0.31 -1.74 16 6 H 0.10 1.06 8.14 -51.92 -0.42 0.64 16 7 C 0.52 8.24 6.24 -10.98 -0.07 8.17 16 8 O -0.54 -10.15 12.20 5.56 0.07 -10.09 16 9 N -0.71 -10.96 5.10 -45.91 -0.23 -11.20 16 10 C 0.16 2.81 0.81 -129.99 -0.10 2.70 16 11 C -0.15 -2.31 8.40 37.16 0.31 -1.99 16 12 C -0.15 -2.62 6.11 -24.46 -0.15 -2.77 16 13 C 0.17 4.08 5.41 -2.41 -0.01 4.07 16 14 N -0.60 -15.56 3.39 -169.93 -0.58 -16.13 16 15 C -0.22 -6.37 10.24 -15.06 -0.15 -6.52 16 16 H 0.07 2.10 7.85 -52.49 -0.41 1.69 16 17 C -0.01 -0.24 5.40 -17.43 -0.09 -0.33 16 18 N -0.92 -26.82 10.68 55.49 0.59 -26.23 16 19 Si 0.91 22.31 29.56 -169.99 -5.03 17.29 16 20 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 21 H -0.29 -7.18 7.11 56.52 0.40 -6.78 16 22 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 23 C 0.14 3.07 6.13 -3.06 -0.02 3.05 16 24 C 0.04 0.53 6.01 -2.09 -0.01 0.52 16 25 H 0.03 0.42 7.98 -51.93 -0.41 0.00 16 26 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 27 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 28 H 0.08 0.83 8.14 -51.93 -0.42 0.40 16 29 H 0.05 0.61 7.97 -51.93 -0.41 0.19 16 30 H 0.07 0.76 8.14 -51.93 -0.42 0.33 16 31 H 0.09 1.33 6.46 -51.93 -0.34 0.99 16 32 H 0.40 5.32 8.48 -40.82 -0.35 4.97 16 33 H 0.07 1.20 6.44 -51.93 -0.33 0.86 16 34 H 0.05 0.68 8.14 -51.93 -0.42 0.25 16 35 H 0.06 0.95 8.13 -51.93 -0.42 0.52 16 36 H 0.08 1.31 8.04 -51.93 -0.42 0.89 16 37 H 0.06 0.95 8.05 -51.93 -0.42 0.53 16 38 H 0.03 0.62 8.08 -51.93 -0.42 0.20 16 39 H 0.07 1.83 6.92 -51.93 -0.36 1.47 16 40 H 0.25 7.12 8.31 -40.82 -0.34 6.78 16 41 H 0.03 0.66 7.82 -51.93 -0.41 0.25 16 42 H 0.03 0.82 6.48 -51.93 -0.34 0.48 16 43 H 0.06 0.91 7.62 -51.93 -0.40 0.51 16 44 H 0.09 1.02 8.14 -51.93 -0.42 0.60 16 LS Contribution 340.31 15.07 5.13 5.13 Total: -1.00 -31.80 340.31 -9.14 -40.94 By element: Atomic # 1 Polarization: 10.91 SS G_CDS: -7.52 Total: 3.38 kcal Atomic # 6 Polarization: 4.87 SS G_CDS: -0.22 Total: 4.65 kcal Atomic # 7 Polarization: -59.73 SS G_CDS: -1.57 Total: -61.29 kcal Atomic # 8 Polarization: -10.15 SS G_CDS: 0.07 Total: -10.09 kcal Atomic # 14 Polarization: 22.31 SS G_CDS: -5.03 Total: 17.29 kcal Total LS contribution 5.13 Total: 5.13 kcal Total: -31.80 -9.14 -40.94 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001046828840.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.965 kcal (2) G-P(sol) polarization free energy of solvation -31.796 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.169 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.142 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.938 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.973 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds