Wall clock time and date at job start Tue Mar 31 2020 05:28:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46900 * 1 3 3 C 1.47903 * 110.99985 * 2 1 4 4 C 1.53991 * 107.05612 * 145.84512 * 3 2 1 5 5 C 1.54588 * 105.14442 * 358.77686 * 4 3 2 6 6 H 1.09003 * 110.72625 * 96.57770 * 5 4 3 7 7 C 1.50699 * 110.72599 * 219.68744 * 5 4 3 8 8 O 1.21275 * 120.00003 * 357.54043 * 7 5 4 9 9 N 1.34776 * 119.99953 * 177.54791 * 7 5 4 10 10 C 1.46501 * 120.00244 * 179.97438 * 9 7 5 11 11 C 1.53001 * 110.91472 * 297.55666 * 10 9 7 12 12 C 1.55159 * 111.00779 * 173.64860 * 10 9 7 13 13 C 1.54320 * 102.94130 * 277.43256 * 12 10 9 14 14 N 1.47294 * 107.30900 * 337.81372 * 13 12 10 15 15 C 1.36935 * 125.79375 * 178.92674 * 14 13 12 16 16 H 1.08000 * 119.99782 * 174.83252 * 15 14 13 17 17 C 1.38813 * 119.99748 * 354.82946 * 15 14 13 18 18 N 1.31620 * 120.00341 * 7.02995 * 17 15 14 19 19 Si 1.86808 * 119.99539 * 187.02565 * 17 15 14 20 20 H 1.48502 * 109.46896 * 94.99260 * 19 17 15 21 21 H 1.48501 * 109.46951 * 214.98619 * 19 17 15 22 22 H 1.48492 * 109.47136 * 334.98799 * 19 17 15 23 23 C 1.47424 * 108.55492 * 358.92849 * 14 13 12 24 24 C 1.48726 * 111.04669 * 117.57985 * 2 1 3 25 25 H 1.09000 * 109.47292 * 60.12857 * 1 2 3 26 26 H 1.09000 * 109.46758 * 180.12327 * 1 2 3 27 27 H 1.08994 * 109.47086 * 300.12238 * 1 2 3 28 28 H 1.09002 * 109.91544 * 26.49406 * 3 2 1 29 29 H 1.09000 * 109.91651 * 265.19778 * 3 2 1 30 30 H 1.09000 * 110.30588 * 239.85492 * 4 3 2 31 31 H 1.09001 * 110.39225 * 117.74180 * 4 3 2 32 32 H 0.97009 * 120.00065 * 0.02562 * 9 7 5 33 33 H 1.08997 * 109.46891 * 182.44364 * 11 10 9 34 34 H 1.09003 * 109.47229 * 302.43858 * 11 10 9 35 35 H 1.08994 * 109.47296 * 62.44731 * 11 10 9 36 36 H 1.08999 * 110.71715 * 35.79455 * 12 10 9 37 37 H 1.08997 * 110.71630 * 158.88815 * 12 10 9 38 38 H 1.09004 * 109.88495 * 97.22540 * 13 12 10 39 39 H 1.09000 * 109.88099 * 218.38976 * 13 12 10 40 40 H 0.96997 * 119.99818 * 179.97438 * 18 17 15 41 41 H 1.09002 * 110.36530 * 265.25725 * 23 14 13 42 42 H 1.09001 * 110.36388 * 143.04481 * 23 14 13 43 43 H 1.08997 * 110.83880 * 81.96399 * 24 2 1 44 44 H 1.09006 * 110.58363 * 318.76931 * 24 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9990 1.3808 0.0000 4 6 3.2982 1.3659 0.8265 5 6 3.4492 -0.0929 1.3153 6 1 4.1141 -0.6532 0.6579 7 6 3.9512 -0.1302 2.7358 8 8 4.2184 0.9031 3.3118 9 7 4.1034 -1.3118 3.3659 10 6 4.5920 -1.3481 4.7466 11 6 6.0071 -0.7742 4.8405 12 6 4.5372 -2.7895 5.3182 13 6 3.0689 -2.9254 5.7730 14 7 2.5458 -1.5638 5.9780 15 6 1.2712 -1.2453 6.3642 16 1 1.0097 -0.2174 6.5677 17 6 0.3154 -2.2435 6.4942 18 7 0.6646 -3.5076 6.3821 19 14 -1.4664 -1.7927 6.8282 20 1 -2.2118 -1.7368 5.5450 21 1 -2.0787 -2.8169 7.7121 22 1 -1.5250 -0.4661 7.4930 23 6 3.6250 -0.5995 5.6975 24 6 2.0031 -0.6426 1.2303 25 1 -0.3634 0.5118 -0.8911 26 1 -0.3633 -1.0277 0.0022 27 1 -0.3633 0.5157 0.8888 28 1 1.2758 2.0561 0.4572 29 1 2.2122 1.6967 -1.0212 30 1 3.2136 2.0429 1.6766 31 1 4.1478 1.6461 0.2038 32 1 3.8902 -2.1383 2.9050 33 1 6.3634 -0.8523 5.8676 34 1 6.6710 -1.3346 4.1821 35 1 5.9953 0.2731 4.5387 36 1 4.7704 -3.5205 4.5440 37 1 5.2171 -2.8951 6.1636 38 1 2.4878 -3.4333 5.0032 39 1 3.0204 -3.4854 6.7069 40 1 -0.0033 -4.2051 6.4732 41 1 4.1370 -0.3244 6.6197 42 1 3.2231 0.2878 5.2083 43 1 2.0095 -1.7279 1.1294 44 1 1.4245 -0.3397 2.1030 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001046828841.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:28:12 Heat of formation + Delta-G solvation = -4.134424 kcal Electronic energy + Delta-G solvation = -23735.513076 eV Core-core repulsion = 20495.385247 eV Total energy + Delta-G solvation = -3240.127830 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.184 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.18505 -38.49790 -36.97268 -33.91941 -32.42846 -31.67504 -30.09515 -28.86024 -28.56470 -25.85397 -25.62431 -23.75174 -22.47562 -21.06573 -20.35790 -19.68540 -18.93859 -17.31510 -16.69801 -16.05024 -15.45001 -14.87845 -14.79557 -14.62565 -14.06755 -13.79231 -13.50245 -13.43677 -13.16575 -12.80533 -12.70905 -12.06270 -11.92191 -11.84281 -11.69449 -11.56144 -11.44029 -11.38352 -11.13676 -10.90643 -10.88436 -10.63986 -10.36614 -10.33722 -10.07241 -9.98298 -9.66566 -9.21378 -8.62604 -8.50859 -8.46652 -6.79036 -5.72282 -3.02420 2.98017 3.38562 3.44881 3.46520 3.49791 4.06341 4.50448 4.55952 4.65813 4.95462 5.09169 5.25568 5.32553 5.35339 5.39216 5.47729 5.48758 5.54006 5.63001 5.69988 5.73409 5.86473 5.88550 5.94551 6.02555 6.06684 6.14621 6.16886 6.20949 6.36084 6.41441 6.55366 6.69858 6.78380 6.84649 6.93954 7.17396 7.53312 7.58194 7.80079 7.95253 8.25927 8.63387 9.23100 9.83614 10.50944 11.40332 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.012767 B = 0.007101 C = 0.005107 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2192.709707 B = 3942.194444 C = 5481.379458 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.014 3.986 2 N -0.523 5.523 3 C 0.035 3.965 4 C -0.116 4.116 5 C -0.113 4.113 6 H 0.104 0.896 7 C 0.525 3.475 8 O -0.540 6.540 9 N -0.699 5.699 10 C 0.156 3.844 11 C -0.148 4.148 12 C -0.146 4.146 13 C 0.177 3.823 14 N -0.602 5.602 15 C -0.221 4.221 16 H 0.075 0.925 17 C -0.008 4.008 18 N -0.922 5.922 19 Si 0.906 3.094 20 H -0.290 1.290 21 H -0.291 1.291 22 H -0.281 1.281 23 C 0.131 3.869 24 C 0.046 3.954 25 H 0.067 0.933 26 H 0.071 0.929 27 H 0.031 0.969 28 H 0.046 0.954 29 H 0.078 0.922 30 H 0.088 0.912 31 H 0.073 0.927 32 H 0.398 0.602 33 H 0.062 0.938 34 H 0.049 0.951 35 H 0.070 0.930 36 H 0.063 0.937 37 H 0.072 0.928 38 H 0.047 0.953 39 H 0.041 0.959 40 H 0.251 0.749 41 H 0.023 0.977 42 H 0.055 0.945 43 H 0.089 0.911 44 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.774 3.897 -11.940 14.270 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 N -0.247 5.247 3 C -0.093 4.093 4 C -0.154 4.154 5 C -0.135 4.135 6 H 0.122 0.878 7 C 0.310 3.690 8 O -0.418 6.418 9 N -0.349 5.349 10 C 0.069 3.931 11 C -0.207 4.207 12 C -0.185 4.185 13 C 0.052 3.948 14 N -0.328 5.328 15 C -0.349 4.349 16 H 0.093 0.907 17 C -0.204 4.204 18 N -0.570 5.570 19 Si 0.737 3.263 20 H -0.218 1.218 21 H -0.218 1.218 22 H -0.207 1.207 23 C 0.004 3.996 24 C -0.082 4.082 25 H 0.086 0.914 26 H 0.089 0.911 27 H 0.050 0.950 28 H 0.064 0.936 29 H 0.096 0.904 30 H 0.106 0.894 31 H 0.092 0.908 32 H 0.231 0.769 33 H 0.081 0.919 34 H 0.068 0.932 35 H 0.089 0.911 36 H 0.082 0.918 37 H 0.090 0.910 38 H 0.065 0.935 39 H 0.059 0.941 40 H 0.061 0.939 41 H 0.041 0.959 42 H 0.073 0.927 43 H 0.107 0.893 44 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 6.901 4.243 -11.919 14.412 hybrid contribution -1.482 0.055 0.711 1.645 sum 5.419 4.298 -11.208 13.170 Atomic orbital electron populations 1.22520 0.87645 1.02483 1.00775 1.64773 1.08375 1.14878 1.36650 1.22907 0.96034 0.90020 1.00372 1.22321 0.97282 0.95547 1.00244 1.22209 0.97990 0.98961 0.94344 0.87814 1.20197 0.77314 0.83714 0.87729 1.90625 1.50766 1.33002 1.67384 1.45807 1.66685 1.08258 1.14140 1.21474 0.93302 0.97132 0.81183 1.21981 0.94850 1.02274 1.01576 1.23214 1.01308 0.93964 1.00002 1.21191 0.86702 0.87276 0.99625 1.44487 1.07701 1.00557 1.80100 1.19045 0.84381 0.93313 1.38168 0.90681 1.24761 0.97917 0.95328 1.02393 1.69957 1.32063 0.98133 1.56829 0.86173 0.85279 0.77315 0.77536 1.21786 1.21772 1.20695 1.21878 0.89526 0.93715 0.94433 1.23226 0.92910 1.00079 0.91945 0.91429 0.91065 0.95000 0.93575 0.90362 0.89365 0.90816 0.76851 0.91947 0.93166 0.91119 0.91801 0.90969 0.93492 0.94091 0.93879 0.95943 0.92677 0.89283 0.92267 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.17 9.40 60.06 0.56 0.74 16 2 N -0.52 -6.70 5.55 -238.54 -1.32 -8.02 16 3 C 0.03 0.41 6.70 -2.75 -0.02 0.39 16 4 C -0.12 -1.45 6.32 -25.38 -0.16 -1.61 16 5 C -0.11 -1.50 3.44 -89.91 -0.31 -1.81 16 6 H 0.10 1.17 8.14 -51.93 -0.42 0.75 16 7 C 0.53 8.59 6.54 -10.99 -0.07 8.52 16 8 O -0.54 -10.43 12.26 5.56 0.07 -10.36 16 9 N -0.70 -11.24 5.15 -45.62 -0.23 -11.48 16 10 C 0.16 2.74 0.82 -129.67 -0.11 2.63 16 11 C -0.15 -2.26 8.59 37.16 0.32 -1.94 16 12 C -0.15 -2.57 5.99 -24.90 -0.15 -2.72 16 13 C 0.18 4.14 5.39 -2.92 -0.02 4.12 16 14 N -0.60 -15.34 3.40 -169.85 -0.58 -15.92 16 15 C -0.22 -6.22 10.27 -15.06 -0.15 -6.38 16 16 H 0.08 2.11 7.84 -52.49 -0.41 1.70 16 17 C -0.01 -0.23 5.48 -17.43 -0.10 -0.32 16 18 N -0.92 -26.74 10.38 55.49 0.58 -26.16 16 19 Si 0.91 22.30 29.56 -169.99 -5.02 17.28 16 20 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 21 H -0.29 -7.21 7.11 56.52 0.40 -6.80 16 22 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 23 C 0.13 2.89 6.10 -2.53 -0.02 2.87 16 24 C 0.05 0.65 6.00 -1.79 -0.01 0.64 16 25 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 26 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 27 H 0.03 0.40 8.01 -51.93 -0.42 -0.01 16 28 H 0.05 0.55 7.73 -51.93 -0.40 0.15 16 29 H 0.08 0.80 8.14 -51.93 -0.42 0.37 16 30 H 0.09 1.29 6.88 -51.93 -0.36 0.94 16 31 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 32 H 0.40 5.67 8.49 -40.82 -0.35 5.33 16 33 H 0.06 0.89 8.11 -51.93 -0.42 0.47 16 34 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 35 H 0.07 1.18 6.54 -51.93 -0.34 0.84 16 36 H 0.06 0.97 8.05 -51.93 -0.42 0.55 16 37 H 0.07 1.19 8.01 -51.93 -0.42 0.78 16 38 H 0.05 1.20 7.31 -51.93 -0.38 0.82 16 39 H 0.04 1.07 7.62 -51.93 -0.40 0.68 16 40 H 0.25 7.10 8.31 -40.82 -0.34 6.76 16 41 H 0.02 0.50 8.04 -51.93 -0.42 0.09 16 42 H 0.06 1.32 6.31 -51.93 -0.33 0.99 16 43 H 0.09 1.17 8.14 -51.93 -0.42 0.75 16 44 H 0.06 1.00 7.87 -51.93 -0.41 0.59 16 LS Contribution 340.76 15.07 5.14 5.14 Total: -1.00 -31.38 340.76 -9.16 -40.53 By element: Atomic # 1 Polarization: 11.41 SS G_CDS: -7.55 Total: 3.86 kcal Atomic # 6 Polarization: 5.35 SS G_CDS: -0.22 Total: 5.13 kcal Atomic # 7 Polarization: -60.01 SS G_CDS: -1.56 Total: -61.57 kcal Atomic # 8 Polarization: -10.43 SS G_CDS: 0.07 Total: -10.36 kcal Atomic # 14 Polarization: 22.30 SS G_CDS: -5.02 Total: 17.28 kcal Total LS contribution 5.14 Total: 5.14 kcal Total: -31.38 -9.16 -40.53 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001046828841.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.400 kcal (2) G-P(sol) polarization free energy of solvation -31.379 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.021 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.156 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.534 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.134 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds