Wall clock time and date at job start Tue Mar 31 2020 05:28:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46901 * 1 3 3 C 1.47840 * 110.99720 * 2 1 4 4 C 1.55120 * 104.90455 * 146.24261 * 3 2 1 5 5 C 1.55134 * 101.55619 * 323.15829 * 4 3 2 6 6 H 1.09002 * 110.70964 * 276.96514 * 5 4 3 7 7 C 1.50705 * 110.70689 * 153.90580 * 5 4 3 8 8 O 1.21279 * 119.99571 * 2.40409 * 7 5 4 9 9 N 1.34777 * 120.00278 * 182.40245 * 7 5 4 10 10 C 1.46495 * 120.00030 * 180.02562 * 9 7 5 11 11 C 1.53002 * 110.64144 * 303.14318 * 10 9 7 12 12 C 1.55151 * 110.72020 * 180.02562 * 10 9 7 13 13 C 1.54914 * 101.58023 * 277.13513 * 12 10 9 14 14 N 1.47420 * 104.83159 * 322.99181 * 13 12 10 15 15 C 1.36945 * 125.64792 * 204.08975 * 14 13 12 16 16 H 1.07997 * 119.99756 * 180.02562 * 15 14 13 17 17 C 1.38805 * 119.99878 * 0.02562 * 15 14 13 18 18 N 1.31624 * 120.00257 * 0.02562 * 17 15 14 19 19 Si 1.86803 * 119.99929 * 179.97438 * 17 15 14 20 20 H 1.48498 * 109.47174 * 270.00277 * 19 17 15 21 21 H 1.48501 * 109.47062 * 30.00228 * 19 17 15 22 22 H 1.48499 * 109.46981 * 150.00382 * 19 17 15 23 23 C 1.47020 * 108.70626 * 24.35323 * 14 13 12 24 24 C 1.47445 * 111.00090 * 120.84630 * 2 1 3 25 25 H 1.08997 * 109.46861 * 299.15377 * 1 2 3 26 26 H 1.09003 * 109.47497 * 59.15931 * 1 2 3 27 27 H 1.08999 * 109.47013 * 179.15665 * 1 2 3 28 28 H 1.08998 * 110.37435 * 265.19246 * 3 2 1 29 29 H 1.09000 * 110.37670 * 27.53305 * 3 2 1 30 30 H 1.08996 * 111.14373 * 205.05008 * 4 3 2 31 31 H 1.09000 * 110.92205 * 81.16988 * 4 3 2 32 32 H 0.97000 * 119.99444 * 0.02562 * 9 7 5 33 33 H 1.09000 * 109.47012 * 296.85846 * 11 10 9 34 34 H 1.09000 * 109.47235 * 56.85267 * 11 10 9 35 35 H 1.08999 * 109.47449 * 176.86138 * 11 10 9 36 36 H 1.09002 * 111.00697 * 159.06407 * 12 10 9 37 37 H 1.08994 * 111.00548 * 35.20875 * 12 10 9 38 38 H 1.08999 * 110.37083 * 204.15142 * 13 12 10 39 39 H 1.08999 * 110.36305 * 81.82793 * 13 12 10 40 40 H 0.97001 * 119.99885 * 179.97438 * 18 17 15 41 41 H 1.09001 * 109.88406 * 118.12749 * 23 14 13 42 42 H 1.09001 * 109.88743 * 239.29401 * 23 14 13 43 43 H 1.08999 * 109.88775 * 117.34025 * 24 2 1 44 44 H 1.08997 * 109.88742 * 356.14226 * 24 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9988 1.3802 0.0000 4 6 3.3052 1.3062 0.8330 5 6 2.9159 0.2822 1.9314 6 1 2.3753 0.7723 2.7411 7 6 4.1384 -0.4231 2.4599 8 8 5.2383 -0.1208 2.0480 9 7 4.0093 -1.3897 3.3902 10 6 5.1978 -2.0749 3.9043 11 6 5.9900 -2.7119 2.7608 12 6 4.8029 -3.1420 4.9590 13 6 4.6655 -2.2790 6.2381 14 7 5.7358 -1.2710 6.1301 15 6 6.3112 -0.6024 7.1776 16 1 7.0916 0.1209 6.9932 17 6 5.8913 -0.8545 8.4764 18 7 4.9405 -1.7365 8.7013 19 14 6.6766 0.0570 9.9054 20 1 7.8474 -0.7114 10.3992 21 1 7.1211 1.3994 9.4519 22 1 5.6855 0.2077 11.0010 23 6 6.0789 -1.0978 4.7110 24 6 1.9974 -0.7058 1.1818 25 1 -0.3633 0.5006 0.8975 26 1 -0.3634 0.5268 -0.8824 27 1 -0.3633 -1.0275 -0.0151 28 1 2.2147 1.7038 -1.0182 29 1 1.2888 2.0592 0.4723 30 1 3.5481 2.2745 1.2703 31 1 4.1321 0.9343 0.2279 32 1 3.1295 -1.6317 3.7193 33 1 5.3806 -3.4760 2.2781 34 1 6.2563 -1.9460 2.0324 35 1 6.8973 -3.1677 3.1571 36 1 5.5895 -3.8879 5.0737 37 1 3.8544 -3.6132 4.7019 38 1 4.8105 -2.8926 7.1273 39 1 3.6895 -1.7944 6.2657 40 1 4.6473 -1.9129 9.6089 41 1 5.8761 -0.0721 4.4031 42 1 7.1313 -1.3334 4.5526 43 1 2.5698 -1.5785 0.8673 44 1 1.1756 -1.0120 1.8290 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001046828843.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:28:14 Heat of formation + Delta-G solvation = -1.605772 kcal Electronic energy + Delta-G solvation = -23236.593135 eV Core-core repulsion = 19996.574956 eV Total energy + Delta-G solvation = -3240.018179 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.184 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.31762 -38.67911 -37.06419 -33.99362 -32.51108 -31.69836 -30.10552 -28.98878 -28.61786 -26.02977 -25.66887 -23.75405 -22.57554 -21.19009 -20.39641 -19.95020 -18.94974 -17.39065 -16.75238 -16.26790 -15.63073 -15.13220 -14.68892 -14.65942 -14.09356 -13.74792 -13.68847 -13.55216 -13.20987 -12.86117 -12.62065 -12.23011 -12.02242 -11.91927 -11.83451 -11.75496 -11.55579 -11.37669 -11.30321 -10.93951 -10.91806 -10.85116 -10.38532 -10.32190 -10.08942 -9.91505 -9.65197 -9.19108 -8.66077 -8.60273 -8.58053 -6.81176 -5.65290 -3.05698 2.90191 3.40280 3.43057 3.45661 3.47663 3.77864 4.34770 4.49078 4.52835 4.80383 5.07085 5.08679 5.11307 5.19211 5.25461 5.34578 5.40351 5.42025 5.50827 5.59011 5.60262 5.66861 5.75572 5.81483 5.88703 6.07586 6.15285 6.19880 6.24370 6.38620 6.47778 6.54164 6.66157 6.73227 6.78410 6.83380 7.16099 7.44657 7.63685 7.80700 7.89343 8.35432 8.55458 9.23302 9.84054 10.48938 11.39029 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.024079 B = 0.004116 C = 0.003979 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1162.555294 B = 6801.623289 C = 7036.058540 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.019 3.981 2 N -0.533 5.533 3 C 0.040 3.960 4 C -0.107 4.107 5 C -0.135 4.135 6 H 0.100 0.900 7 C 0.527 3.473 8 O -0.535 6.535 9 N -0.707 5.707 10 C 0.159 3.841 11 C -0.152 4.152 12 C -0.147 4.147 13 C 0.153 3.847 14 N -0.604 5.604 15 C -0.218 4.218 16 H 0.077 0.923 17 C -0.013 4.013 18 N -0.925 5.925 19 Si 0.914 3.086 20 H -0.289 1.289 21 H -0.282 1.282 22 H -0.291 1.291 23 C 0.138 3.862 24 C 0.054 3.946 25 H 0.028 0.972 26 H 0.068 0.932 27 H 0.068 0.932 28 H 0.083 0.917 29 H 0.047 0.953 30 H 0.079 0.921 31 H 0.090 0.910 32 H 0.396 0.604 33 H 0.049 0.951 34 H 0.076 0.924 35 H 0.062 0.938 36 H 0.076 0.924 37 H 0.062 0.938 38 H 0.108 0.892 39 H 0.009 0.991 40 H 0.251 0.749 41 H 0.029 0.971 42 H 0.030 0.970 43 H 0.083 0.917 44 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.925 0.521 -15.557 17.943 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 N -0.258 5.258 3 C -0.088 4.088 4 C -0.146 4.146 5 C -0.157 4.157 6 H 0.118 0.882 7 C 0.312 3.688 8 O -0.412 6.412 9 N -0.357 5.357 10 C 0.073 3.927 11 C -0.210 4.210 12 C -0.186 4.186 13 C 0.028 3.972 14 N -0.330 5.330 15 C -0.346 4.346 16 H 0.094 0.906 17 C -0.208 4.208 18 N -0.574 5.574 19 Si 0.745 3.255 20 H -0.216 1.216 21 H -0.208 1.208 22 H -0.217 1.217 23 C 0.011 3.989 24 C -0.074 4.074 25 H 0.047 0.953 26 H 0.087 0.913 27 H 0.087 0.913 28 H 0.101 0.899 29 H 0.066 0.934 30 H 0.097 0.903 31 H 0.109 0.891 32 H 0.230 0.770 33 H 0.068 0.932 34 H 0.095 0.905 35 H 0.081 0.919 36 H 0.094 0.906 37 H 0.081 0.919 38 H 0.126 0.874 39 H 0.027 0.973 40 H 0.062 0.938 41 H 0.047 0.953 42 H 0.048 0.952 43 H 0.101 0.899 44 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -7.987 0.497 -16.067 17.950 hybrid contribution -0.517 0.832 1.783 2.034 sum -8.504 1.328 -14.284 16.677 Atomic orbital electron populations 1.22565 0.87579 1.02169 1.00684 1.63581 1.07961 1.14678 1.39535 1.23154 0.95704 0.89134 1.00799 1.22619 0.97759 0.98605 0.95576 1.22608 0.95890 0.97749 0.99470 0.88228 1.20099 0.90207 0.79501 0.78986 1.90643 1.27223 1.64231 1.59083 1.46012 1.10094 1.38089 1.41509 1.21356 0.85340 0.92961 0.93013 1.22062 0.99599 1.00629 0.98705 1.23353 1.00613 0.97272 0.97325 1.21931 0.90019 0.90183 0.95076 1.44515 1.42245 1.46368 0.99905 1.19104 1.14541 1.16202 0.84782 0.90560 1.24755 0.98933 0.99832 0.97234 1.69780 1.31658 1.36801 1.19173 0.86072 0.78239 0.79114 0.82108 1.21581 1.20781 1.21697 1.21594 0.95722 0.96327 0.85210 1.22793 0.97347 0.96996 0.90279 0.95334 0.91341 0.91275 0.89870 0.93444 0.90276 0.89110 0.76966 0.93223 0.90496 0.91891 0.90563 0.91929 0.87445 0.97278 0.93826 0.95260 0.95241 0.89889 0.91933 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.15 9.12 60.07 0.55 0.70 16 2 N -0.53 -5.48 5.45 -239.38 -1.30 -6.78 16 3 C 0.04 0.38 6.73 -2.18 -0.01 0.37 16 4 C -0.11 -1.24 6.17 -24.48 -0.15 -1.39 16 5 C -0.13 -1.63 3.32 -89.95 -0.30 -1.93 16 6 H 0.10 1.14 8.14 -51.93 -0.42 0.72 16 7 C 0.53 8.27 6.21 -10.98 -0.07 8.21 16 8 O -0.53 -10.11 12.71 5.56 0.07 -10.04 16 9 N -0.71 -11.04 5.11 -45.91 -0.23 -11.27 16 10 C 0.16 2.85 0.81 -129.98 -0.10 2.75 16 11 C -0.15 -2.44 8.44 37.16 0.31 -2.12 16 12 C -0.15 -2.66 6.07 -24.58 -0.15 -2.81 16 13 C 0.15 3.62 5.87 -2.53 -0.01 3.60 16 14 N -0.60 -15.72 3.39 -170.07 -0.58 -16.30 16 15 C -0.22 -6.21 10.27 -15.06 -0.15 -6.36 16 16 H 0.08 2.14 7.83 -52.49 -0.41 1.73 16 17 C -0.01 -0.36 5.49 -17.43 -0.10 -0.45 16 18 N -0.92 -26.80 10.09 55.49 0.56 -26.24 16 19 Si 0.91 22.31 29.55 -169.99 -5.02 17.29 16 20 H -0.29 -7.01 7.11 56.52 0.40 -6.60 16 21 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 22 H -0.29 -7.12 7.11 56.52 0.40 -6.71 16 23 C 0.14 3.11 6.20 -3.06 -0.02 3.09 16 24 C 0.05 0.57 6.47 -2.83 -0.02 0.55 16 25 H 0.03 0.22 8.10 -51.93 -0.42 -0.20 16 26 H 0.07 0.49 8.14 -51.93 -0.42 0.06 16 27 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 28 H 0.08 0.74 8.14 -51.93 -0.42 0.31 16 29 H 0.05 0.41 7.78 -51.93 -0.40 0.01 16 30 H 0.08 0.88 8.14 -51.93 -0.42 0.46 16 31 H 0.09 1.20 7.45 -51.93 -0.39 0.81 16 32 H 0.40 5.38 8.49 -40.82 -0.35 5.03 16 33 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 34 H 0.08 1.34 5.97 -51.93 -0.31 1.03 16 35 H 0.06 0.98 8.08 -51.93 -0.42 0.56 16 36 H 0.08 1.37 8.05 -51.93 -0.42 0.95 16 37 H 0.06 0.96 8.07 -51.93 -0.42 0.54 16 38 H 0.11 2.88 5.87 -51.93 -0.30 2.57 16 39 H 0.01 0.23 8.14 -51.93 -0.42 -0.19 16 40 H 0.25 7.06 8.31 -40.82 -0.34 6.72 16 41 H 0.03 0.72 6.90 -51.93 -0.36 0.36 16 42 H 0.03 0.68 7.78 -51.93 -0.40 0.28 16 43 H 0.08 0.95 7.81 -51.93 -0.41 0.54 16 44 H 0.06 0.57 7.58 -51.93 -0.39 0.17 16 LS Contribution 339.86 15.07 5.12 5.12 Total: -1.00 -31.78 339.86 -9.11 -40.90 By element: Atomic # 1 Polarization: 10.63 SS G_CDS: -7.50 Total: 3.13 kcal Atomic # 6 Polarization: 4.43 SS G_CDS: -0.23 Total: 4.20 kcal Atomic # 7 Polarization: -59.04 SS G_CDS: -1.56 Total: -60.60 kcal Atomic # 8 Polarization: -10.11 SS G_CDS: 0.07 Total: -10.04 kcal Atomic # 14 Polarization: 22.31 SS G_CDS: -5.02 Total: 17.29 kcal Total LS contribution 5.12 Total: 5.12 kcal Total: -31.78 -9.11 -40.90 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001046828843.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.291 kcal (2) G-P(sol) polarization free energy of solvation -31.785 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.506 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.112 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.897 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.606 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds