Wall clock time and date at job start Tue Mar 31 2020 05:28:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46895 * 1 3 3 C 1.48530 * 111.00242 * 2 1 4 4 C 1.55102 * 103.28799 * 200.33020 * 3 2 1 5 5 C 1.54596 * 102.84161 * 37.30753 * 4 3 2 6 6 H 1.09009 * 110.30930 * 97.11437 * 5 4 3 7 7 C 1.50695 * 110.31097 * 219.18380 * 5 4 3 8 8 O 1.21280 * 120.00023 * 358.61221 * 7 5 4 9 9 N 1.34775 * 120.00040 * 178.61095 * 7 5 4 10 10 C 1.46505 * 119.99789 * 180.02562 * 9 7 5 11 11 C 1.52997 * 110.88885 * 59.30036 * 10 9 7 12 12 C 1.55161 * 111.00287 * 183.18234 * 10 9 7 13 13 C 1.54368 * 102.92121 * 82.64090 * 12 10 9 14 14 N 1.47021 * 107.29133 * 22.13540 * 13 12 10 15 15 C 1.36935 * 125.64931 * 181.12810 * 14 13 12 16 16 H 1.08002 * 119.99984 * 179.97438 * 15 14 13 17 17 C 1.38817 * 120.00028 * 359.96293 * 15 14 13 18 18 N 1.31614 * 119.99707 * 359.97438 * 17 15 14 19 19 Si 1.86804 * 119.99753 * 180.02562 * 17 15 14 20 20 H 1.48500 * 109.47178 * 359.97438 * 19 17 15 21 21 H 1.48499 * 109.47055 * 119.99908 * 19 17 15 22 22 H 1.48505 * 109.46808 * 239.99753 * 19 17 15 23 23 C 1.47426 * 108.70119 * 1.09637 * 14 13 12 24 24 C 1.47906 * 111.00186 * 242.60345 * 2 1 3 25 25 H 1.08999 * 109.47307 * 177.39324 * 1 2 3 26 26 H 1.08998 * 109.47255 * 297.39291 * 1 2 3 27 27 H 1.08998 * 109.47180 * 57.39145 * 1 2 3 28 28 H 1.09001 * 110.66632 * 318.71821 * 3 2 1 29 29 H 1.09000 * 110.66702 * 81.84609 * 3 2 1 30 30 H 1.09002 * 110.71237 * 278.99976 * 4 3 2 31 31 H 1.08993 * 110.81120 * 155.65967 * 4 3 2 32 32 H 0.96999 * 120.00279 * 0.02562 * 9 7 5 33 33 H 1.09002 * 109.47153 * 60.69939 * 11 10 9 34 34 H 1.09001 * 109.46832 * 300.70130 * 11 10 9 35 35 H 1.09004 * 109.47261 * 180.70111 * 11 10 9 36 36 H 1.09004 * 110.71609 * 200.97092 * 12 10 9 37 37 H 1.08995 * 110.72035 * 324.24847 * 12 10 9 38 38 H 1.09004 * 109.84586 * 262.72888 * 13 12 10 39 39 H 1.09001 * 110.03516 * 141.65089 * 13 12 10 40 40 H 0.97008 * 119.99683 * 180.02562 * 18 17 15 41 41 H 1.08997 * 110.36416 * 217.03358 * 23 14 13 42 42 H 1.09001 * 110.46110 * 94.75385 * 23 14 13 43 43 H 1.09008 * 109.91260 * 26.49197 * 24 2 1 44 44 H 1.09000 * 110.08401 * 265.29226 * 24 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4689 0.0000 0.0000 3 6 2.0013 1.3866 0.0000 4 6 3.4505 1.2121 -0.5244 5 6 3.2983 0.1053 -1.5930 6 1 3.2142 0.5471 -2.5860 7 6 4.4716 -0.8387 -1.5391 8 8 5.3690 -0.6460 -0.7464 9 7 4.5237 -1.8972 -2.3718 10 6 5.6641 -2.8153 -2.3189 11 6 5.7946 -3.4439 -0.9302 12 6 5.5502 -3.9074 -3.4153 13 6 6.1070 -3.1981 -4.6682 14 7 6.9564 -2.0919 -4.2029 15 6 7.6204 -1.2033 -5.0058 16 1 8.2216 -0.4220 -4.5648 17 6 7.5209 -1.3069 -6.3865 18 7 6.7888 -2.2595 -6.9239 19 14 8.4272 -0.0950 -7.4817 20 1 9.1749 0.8714 -6.6379 21 1 9.3780 -0.8309 -8.3534 22 1 7.4487 0.6380 -8.3246 23 6 6.9743 -2.0975 -2.7288 24 6 1.9990 -0.6354 -1.2259 25 1 -0.3634 -1.0266 -0.0467 26 1 -0.3634 0.4728 0.9124 27 1 -0.3633 0.5538 -0.8657 28 1 1.4237 2.0204 -0.6729 29 1 2.0041 1.7976 1.0095 30 1 4.1138 0.8861 0.2768 31 1 3.8131 2.1359 -0.9750 32 1 3.8061 -2.0512 -3.0060 33 1 4.8914 -4.0096 -0.7011 34 1 5.9294 -2.6581 -0.1869 35 1 6.6558 -4.1119 -0.9131 36 1 6.1596 -4.7745 -3.1605 37 1 4.5100 -4.1962 -3.5652 38 1 5.2851 -2.8073 -5.2682 39 1 6.6988 -3.8961 -5.2604 40 1 6.7196 -2.3321 -7.8887 41 1 6.9835 -1.0771 -2.3457 42 1 7.8398 -2.6481 -2.3603 43 1 1.2758 -0.5402 -2.0359 44 1 2.2116 -1.6881 -1.0400 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001046828844.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:28:17 Heat of formation + Delta-G solvation = -2.673469 kcal Electronic energy + Delta-G solvation = -23424.591225 eV Core-core repulsion = 20184.526748 eV Total energy + Delta-G solvation = -3240.064478 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.184 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.23581 -38.57153 -36.97552 -33.90347 -32.51111 -31.69814 -30.08518 -28.91789 -28.56730 -25.95213 -25.63055 -23.72802 -22.46483 -21.30465 -20.33167 -19.76666 -18.89229 -17.33324 -16.62967 -16.15110 -15.60688 -15.23169 -14.62132 -14.47013 -14.28588 -13.84070 -13.68648 -13.32792 -13.12725 -12.83457 -12.43454 -12.06884 -11.98287 -11.88878 -11.72111 -11.67977 -11.64232 -11.46031 -11.20541 -10.88382 -10.86733 -10.78453 -10.32780 -10.32449 -10.03402 -9.95314 -9.64344 -9.13789 -8.64296 -8.61785 -8.47338 -6.77896 -5.69521 -3.01070 3.03076 3.40283 3.46707 3.48986 3.54194 3.83399 4.46603 4.52126 4.56052 4.89626 5.10089 5.11616 5.13778 5.23511 5.33478 5.42432 5.43989 5.50760 5.52052 5.62568 5.65818 5.73354 5.76227 5.79223 5.95186 6.06885 6.17903 6.21054 6.26093 6.40754 6.43938 6.58311 6.66137 6.73731 6.80586 6.85844 7.19919 7.56946 7.58598 7.82154 7.98459 8.27968 8.66994 9.25392 9.85541 10.51926 11.42599 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.019751 B = 0.004776 C = 0.004346 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1417.284144 B = 5861.239051 C = 6441.349254 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.016 3.984 2 N -0.521 5.521 3 C 0.033 3.967 4 C -0.108 4.108 5 C -0.124 4.124 6 H 0.101 0.899 7 C 0.529 3.471 8 O -0.537 6.537 9 N -0.701 5.701 10 C 0.157 3.843 11 C -0.150 4.150 12 C -0.147 4.147 13 C 0.178 3.822 14 N -0.603 5.603 15 C -0.220 4.220 16 H 0.077 0.923 17 C -0.010 4.010 18 N -0.924 5.924 19 Si 0.909 3.091 20 H -0.280 1.280 21 H -0.291 1.291 22 H -0.292 1.292 23 C 0.133 3.867 24 C 0.047 3.953 25 H 0.068 0.932 26 H 0.069 0.931 27 H 0.028 0.972 28 H 0.045 0.955 29 H 0.084 0.916 30 H 0.096 0.904 31 H 0.075 0.925 32 H 0.397 0.603 33 H 0.049 0.951 34 H 0.074 0.926 35 H 0.061 0.939 36 H 0.072 0.928 37 H 0.063 0.937 38 H 0.044 0.956 39 H 0.043 0.957 40 H 0.250 0.750 41 H 0.052 0.948 42 H 0.024 0.976 43 H 0.052 0.948 44 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.650 1.651 11.664 17.286 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 N -0.245 5.245 3 C -0.094 4.094 4 C -0.146 4.146 5 C -0.146 4.146 6 H 0.119 0.881 7 C 0.314 3.686 8 O -0.414 6.414 9 N -0.351 5.351 10 C 0.070 3.930 11 C -0.208 4.208 12 C -0.185 4.185 13 C 0.053 3.947 14 N -0.330 5.330 15 C -0.349 4.349 16 H 0.094 0.906 17 C -0.206 4.206 18 N -0.573 5.573 19 Si 0.740 3.260 20 H -0.205 1.205 21 H -0.218 1.218 22 H -0.219 1.219 23 C 0.006 3.994 24 C -0.082 4.082 25 H 0.087 0.913 26 H 0.087 0.913 27 H 0.046 0.954 28 H 0.063 0.937 29 H 0.102 0.898 30 H 0.114 0.886 31 H 0.094 0.906 32 H 0.230 0.770 33 H 0.068 0.932 34 H 0.093 0.907 35 H 0.080 0.920 36 H 0.091 0.909 37 H 0.082 0.918 38 H 0.062 0.938 39 H 0.061 0.939 40 H 0.060 0.940 41 H 0.070 0.930 42 H 0.042 0.958 43 H 0.071 0.929 44 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -11.805 1.530 12.463 17.235 hybrid contribution -0.268 0.922 -1.948 2.172 sum -12.073 2.453 10.515 16.197 Atomic orbital electron populations 1.22523 0.87867 1.02056 1.00872 1.64732 1.07974 1.15268 1.36507 1.23325 0.95281 0.89575 1.01238 1.22477 0.96428 0.97252 0.98446 1.22210 0.93878 0.96582 1.01894 0.88066 1.20091 0.87139 0.81014 0.80315 1.90619 1.39058 1.73155 1.38607 1.45800 1.23903 1.26952 1.38430 1.21469 0.87253 0.89622 0.94630 1.21999 1.01082 1.00871 0.96879 1.23228 1.00816 0.97260 0.97227 1.21152 0.94121 0.89138 0.90321 1.44454 1.56072 1.33248 0.99192 1.19121 1.21829 1.06395 0.87512 0.90559 1.24757 1.00456 0.98910 0.96465 1.69962 1.43669 1.33800 1.09872 0.86066 0.78926 0.80295 0.80668 1.20547 1.21791 1.21890 1.21870 0.92823 0.98790 0.85944 1.22836 0.94314 0.99703 0.91319 0.91297 0.91250 0.95364 0.93718 0.89782 0.88571 0.90601 0.76956 0.93233 0.90704 0.92022 0.90948 0.91822 0.93751 0.93856 0.93963 0.92972 0.95803 0.92945 0.89785 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.13 9.40 60.06 0.56 0.70 16 2 N -0.52 -5.76 5.55 -238.61 -1.33 -7.08 16 3 C 0.03 0.34 6.56 -1.81 -0.01 0.33 16 4 C -0.11 -1.33 6.42 -24.78 -0.16 -1.49 16 5 C -0.12 -1.61 3.38 -90.42 -0.31 -1.91 16 6 H 0.10 1.26 8.14 -51.92 -0.42 0.84 16 7 C 0.53 8.75 6.31 -10.99 -0.07 8.68 16 8 O -0.54 -10.50 12.24 5.56 0.07 -10.43 16 9 N -0.70 -11.44 5.06 -45.62 -0.23 -11.67 16 10 C 0.16 2.81 0.82 -129.66 -0.11 2.70 16 11 C -0.15 -2.36 8.57 37.16 0.32 -2.04 16 12 C -0.15 -2.62 5.99 -24.87 -0.15 -2.77 16 13 C 0.18 4.20 5.37 -3.04 -0.02 4.19 16 14 N -0.60 -15.56 3.39 -170.04 -0.58 -16.14 16 15 C -0.22 -6.26 10.28 -15.06 -0.15 -6.41 16 16 H 0.08 2.15 7.83 -52.49 -0.41 1.74 16 17 C -0.01 -0.29 5.49 -17.43 -0.10 -0.39 16 18 N -0.92 -27.00 10.31 55.49 0.57 -26.42 16 19 Si 0.91 22.40 29.55 -169.99 -5.02 17.37 16 20 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 21 H -0.29 -7.20 7.11 56.52 0.40 -6.79 16 22 H -0.29 -7.19 7.11 56.52 0.40 -6.79 16 23 C 0.13 2.95 6.14 -2.53 -0.02 2.93 16 24 C 0.05 0.52 6.32 -2.75 -0.02 0.50 16 25 H 0.07 0.55 8.14 -51.93 -0.42 0.12 16 26 H 0.07 0.53 8.14 -51.93 -0.42 0.10 16 27 H 0.03 0.22 8.00 -51.93 -0.42 -0.19 16 28 H 0.04 0.41 7.96 -51.93 -0.41 0.00 16 29 H 0.08 0.79 8.14 -51.93 -0.42 0.37 16 30 H 0.10 1.39 6.89 -51.93 -0.36 1.03 16 31 H 0.08 0.87 8.14 -51.93 -0.42 0.45 16 32 H 0.40 5.77 8.50 -40.82 -0.35 5.42 16 33 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 34 H 0.07 1.30 6.23 -51.93 -0.32 0.97 16 35 H 0.06 0.91 8.13 -51.93 -0.42 0.49 16 36 H 0.07 1.22 8.04 -51.93 -0.42 0.80 16 37 H 0.06 0.98 8.06 -51.93 -0.42 0.56 16 38 H 0.04 1.14 7.38 -51.93 -0.38 0.76 16 39 H 0.04 1.15 7.50 -51.93 -0.39 0.76 16 40 H 0.25 7.10 8.31 -40.82 -0.34 6.76 16 41 H 0.05 1.25 6.58 -51.93 -0.34 0.91 16 42 H 0.02 0.54 8.03 -51.93 -0.42 0.12 16 43 H 0.05 0.51 7.73 -51.92 -0.40 0.11 16 44 H 0.08 0.98 7.62 -51.93 -0.40 0.59 16 LS Contribution 340.12 15.07 5.13 5.13 Total: -1.00 -32.06 340.12 -9.14 -41.20 By element: Atomic # 1 Polarization: 10.56 SS G_CDS: -7.53 Total: 3.04 kcal Atomic # 6 Polarization: 5.24 SS G_CDS: -0.22 Total: 5.02 kcal Atomic # 7 Polarization: -59.76 SS G_CDS: -1.56 Total: -61.32 kcal Atomic # 8 Polarization: -10.50 SS G_CDS: 0.07 Total: -10.43 kcal Atomic # 14 Polarization: 22.40 SS G_CDS: -5.02 Total: 17.37 kcal Total LS contribution 5.13 Total: 5.13 kcal Total: -32.06 -9.14 -41.20 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001046828844.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.522 kcal (2) G-P(sol) polarization free energy of solvation -32.060 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.462 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.136 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.196 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.673 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds