Wall clock time and date at job start Tue Mar 31 2020 05:43:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.50697 * 109.47516 * 2 1 4 4 O 1.21289 * 119.99917 * 359.97438 * 3 2 1 5 5 N 1.34777 * 120.00570 * 179.97438 * 3 2 1 6 6 C 1.47025 * 125.64070 * 359.95438 * 5 3 2 7 7 C 1.54331 * 107.26766 * 181.09483 * 6 5 3 8 8 C 1.55163 * 102.94000 * 22.19384 * 7 6 5 9 9 H 1.08995 * 111.00443 * 82.56877 * 8 7 6 10 10 N 1.46902 * 111.03234 * 206.40953 * 8 7 6 11 11 C 1.46893 * 111.00286 * 296.28385 * 10 8 7 12 12 C 1.53233 * 109.34284 * 172.75005 * 11 10 8 13 13 N 1.47072 * 108.52377 * 53.83224 * 12 11 10 14 14 C 1.36939 * 120.88489 * 128.83441 * 13 12 11 15 15 H 1.08001 * 119.99964 * 208.55547 * 14 13 12 16 16 C 1.38814 * 119.99670 * 28.55747 * 14 13 12 17 17 N 1.31621 * 119.99805 * 15.06240 * 16 14 13 18 18 Si 1.86801 * 119.99886 * 195.06194 * 16 14 13 19 19 H 1.48498 * 109.47001 * 0.02562 * 18 16 14 20 20 H 1.48498 * 109.46670 * 120.00006 * 18 16 14 21 21 H 1.48501 * 109.47046 * 240.00039 * 18 16 14 22 22 C 1.47088 * 118.23579 * 308.81627 * 13 12 11 23 23 C 1.46903 * 110.99540 * 171.98642 * 10 8 7 24 24 C 1.47420 * 125.65035 * 179.97438 * 5 3 2 25 25 H 1.09001 * 109.46844 * 60.00224 * 1 2 3 26 26 H 1.08996 * 109.47209 * 180.02562 * 1 2 3 27 27 H 1.08998 * 109.47229 * 300.01042 * 1 2 3 28 28 H 1.08990 * 109.47448 * 239.99186 * 2 1 3 29 29 H 1.09002 * 109.46888 * 119.99226 * 2 1 3 30 30 H 1.08996 * 109.88544 * 300.50801 * 6 5 3 31 31 H 1.08996 * 109.88292 * 61.67940 * 6 5 3 32 32 H 1.08999 * 110.71834 * 263.83292 * 7 6 5 33 33 H 1.08994 * 110.71686 * 140.55151 * 7 6 5 34 34 H 1.08999 * 109.49477 * 292.71402 * 11 10 8 35 35 H 1.09001 * 109.49010 * 52.79112 * 11 10 8 36 36 H 1.09008 * 109.62882 * 294.12224 * 12 11 10 37 37 H 1.08997 * 109.78904 * 173.64021 * 12 11 10 38 38 H 0.97002 * 119.99802 * 180.02562 * 17 16 14 39 39 H 1.08996 * 109.62901 * 291.47034 * 22 13 12 40 40 H 1.08994 * 109.78503 * 170.98601 * 22 13 12 41 41 H 1.08998 * 109.49391 * 307.21241 * 23 10 8 42 42 H 1.09002 * 109.49523 * 67.29255 * 23 10 8 43 43 H 1.08998 * 110.36345 * 37.00152 * 24 5 3 44 44 H 1.09000 * 110.36921 * 274.67303 * 24 5 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 8 1.2443 2.3427 -0.0005 5 7 3.3575 1.6671 0.0005 6 6 4.4181 0.6489 0.0021 7 6 5.7690 1.3947 0.0303 8 6 5.3884 2.7810 0.6142 9 1 5.3384 2.7461 1.7024 10 7 6.3277 3.8177 0.1659 11 6 7.6822 3.5545 0.6698 12 6 8.6614 4.5486 0.0366 13 7 8.1631 5.9116 0.2754 14 6 8.9768 6.8734 0.8123 15 1 8.5515 7.6753 1.3976 16 6 10.3481 6.8177 0.6041 17 7 10.8401 6.0361 -0.3337 18 14 11.4950 7.8521 1.6548 19 1 10.6983 8.6382 2.6307 20 1 12.4340 6.9630 2.3849 21 1 12.2647 8.7768 0.7842 22 6 6.7678 6.2144 -0.0780 23 6 5.8632 5.1546 0.5598 24 6 3.9833 3.0018 0.0001 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0276 0.0005 27 1 -0.3633 0.5140 0.8899 28 1 1.8934 -0.5139 -0.8898 29 1 1.8933 -0.5137 0.8901 30 1 4.3248 0.0176 0.8857 31 1 4.3493 0.0406 -0.8997 32 1 6.1735 1.4982 -0.9766 33 1 6.4781 0.8835 0.6814 34 1 7.6961 3.6703 1.7535 35 1 7.9762 2.5379 0.4085 36 1 8.7269 4.3654 -1.0360 37 1 9.6468 4.4345 0.4883 38 1 11.7984 5.9969 -0.4789 39 1 6.6513 6.1914 -1.1615 40 1 6.4977 7.2010 0.2983 41 1 4.8380 5.2986 0.2187 42 1 5.9024 5.2483 1.6450 43 1 3.4051 3.6921 0.6143 44 1 4.0695 3.3801 -1.0186 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001051957910.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:43:15 Heat of formation + Delta-G solvation = -3.575064 kcal Electronic energy + Delta-G solvation = -22780.755390 eV Core-core repulsion = 19540.651816 eV Total energy + Delta-G solvation = -3240.103574 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.184 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -40.25798 -38.54554 -36.81447 -34.18561 -33.00102 -31.63795 -30.36492 -30.11760 -28.53628 -26.23246 -24.62549 -23.31524 -22.82104 -21.94024 -20.38808 -19.18337 -19.13093 -17.37585 -17.09606 -16.34593 -15.70286 -15.14529 -14.86717 -14.30550 -14.17913 -14.08104 -13.62236 -13.43755 -13.36764 -13.14730 -12.95339 -12.54720 -12.44102 -12.36932 -11.96003 -11.81406 -11.42939 -11.30959 -11.20256 -11.04762 -10.89186 -10.76609 -10.42944 -10.29343 -10.06211 -9.94923 -9.75355 -9.59228 -8.75871 -8.52575 -7.91165 -6.64903 -5.79229 -3.22511 2.51833 2.82125 3.35967 3.43938 3.46164 4.21166 4.24684 4.49130 4.57662 4.66863 4.79302 4.83187 4.97753 5.16990 5.24790 5.30784 5.39316 5.44018 5.45644 5.52634 5.67151 5.71885 5.81916 5.84341 5.88270 5.94546 5.96169 6.08008 6.14106 6.17677 6.25177 6.32586 6.51896 6.67993 6.92905 7.21286 7.38753 7.55090 7.61495 7.68055 7.80596 8.04688 8.43802 9.20892 9.83368 10.42750 11.29607 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.047667 B = 0.003292 C = 0.003162 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 587.269327 B = 8504.243377 C = 8853.491205 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.139 4.139 3 C 0.524 3.476 4 O -0.543 6.543 5 N -0.620 5.620 6 C 0.103 3.897 7 C -0.124 4.124 8 C 0.068 3.932 9 H 0.050 0.950 10 N -0.520 5.520 11 C 0.036 3.964 12 C 0.179 3.821 13 N -0.595 5.595 14 C -0.251 4.251 15 H 0.065 0.935 16 C 0.002 3.998 17 N -0.904 5.904 18 Si 0.902 3.098 19 H -0.278 1.278 20 H -0.289 1.289 21 H -0.290 1.290 22 C 0.149 3.851 23 C 0.041 3.959 24 C 0.115 3.885 25 H 0.061 0.939 26 H 0.060 0.940 27 H 0.061 0.939 28 H 0.092 0.908 29 H 0.091 0.909 30 H 0.067 0.933 31 H 0.070 0.930 32 H 0.090 0.910 33 H 0.080 0.920 34 H 0.025 0.975 35 H 0.062 0.938 36 H 0.027 0.973 37 H 0.087 0.913 38 H 0.253 0.747 39 H 0.026 0.974 40 H 0.056 0.944 41 H 0.063 0.937 42 H 0.028 0.972 43 H 0.074 0.926 44 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.657 -14.744 1.112 20.128 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.179 4.179 3 C 0.313 3.687 4 O -0.421 6.421 5 N -0.355 5.355 6 C -0.020 4.020 7 C -0.162 4.162 8 C -0.041 4.041 9 H 0.068 0.932 10 N -0.246 5.246 11 C -0.093 4.093 12 C 0.053 3.947 13 N -0.319 5.319 14 C -0.381 4.381 15 H 0.083 0.917 16 C -0.197 4.197 17 N -0.548 5.548 18 Si 0.732 3.268 19 H -0.203 1.203 20 H -0.216 1.216 21 H -0.217 1.217 22 C 0.023 3.977 23 C -0.088 4.088 24 C -0.008 4.008 25 H 0.080 0.920 26 H 0.079 0.921 27 H 0.080 0.920 28 H 0.110 0.890 29 H 0.109 0.891 30 H 0.085 0.915 31 H 0.088 0.912 32 H 0.109 0.891 33 H 0.099 0.901 34 H 0.043 0.957 35 H 0.081 0.919 36 H 0.045 0.955 37 H 0.105 0.895 38 H 0.063 0.937 39 H 0.044 0.956 40 H 0.074 0.926 41 H 0.082 0.918 42 H 0.047 0.953 43 H 0.093 0.907 44 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -13.962 -14.272 0.560 19.974 hybrid contribution 0.793 0.436 1.398 1.666 sum -13.169 -13.836 1.958 19.201 Atomic orbital electron populations 1.21536 0.93029 1.01492 1.03409 1.21604 0.98469 0.93636 1.04191 1.20466 0.80334 0.91916 0.75934 1.90710 1.54361 1.46799 1.50205 1.48529 1.05137 1.08483 1.73304 1.22075 0.87109 0.91323 1.01543 1.22699 0.95340 0.94720 1.03409 1.22752 0.91965 0.92593 0.96827 0.93249 1.62024 1.01920 1.01111 1.59529 1.22910 0.88771 1.00320 0.97252 1.20839 0.94890 0.81607 0.97334 1.44110 1.07327 1.07327 1.73120 1.19230 0.88304 1.05909 1.24651 0.91700 1.25082 0.97877 0.99300 0.97410 1.70021 1.11856 1.41817 1.31138 0.86218 0.80928 0.79688 0.79918 1.20307 1.21599 1.21667 1.20970 0.85549 0.94562 0.96667 1.22679 0.98589 0.89585 0.97963 1.22237 0.92227 0.84262 1.02046 0.91951 0.92097 0.92005 0.89002 0.89080 0.91471 0.91154 0.89099 0.90090 0.95681 0.91918 0.95523 0.89457 0.93674 0.95616 0.92580 0.91835 0.95324 0.90741 0.90205 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.12 9.20 37.16 0.34 -0.78 16 2 C -0.14 -1.13 5.61 -27.88 -0.16 -1.29 16 3 C 0.52 6.57 7.85 -10.99 -0.09 6.48 16 4 O -0.54 -8.99 16.24 5.55 0.09 -8.90 16 5 N -0.62 -7.37 3.33 -170.51 -0.57 -7.93 16 6 C 0.10 0.91 6.49 -3.06 -0.02 0.89 16 7 C -0.12 -1.32 5.43 -24.89 -0.14 -1.45 16 8 C 0.07 0.93 2.71 -65.55 -0.18 0.75 16 9 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 10 N -0.52 -8.81 4.53 -223.77 -1.01 -9.82 16 11 C 0.04 0.68 5.49 -3.71 -0.02 0.66 16 12 C 0.18 4.23 5.40 -3.61 -0.02 4.21 16 13 N -0.60 -14.99 3.03 -172.02 -0.52 -15.51 16 14 C -0.25 -6.90 9.63 -15.06 -0.14 -7.05 16 15 H 0.07 1.76 7.87 -52.49 -0.41 1.35 16 16 C 0.00 0.05 4.97 -17.43 -0.09 -0.04 16 17 N -0.90 -26.06 11.17 55.49 0.62 -25.44 16 18 Si 0.90 21.61 29.58 -169.99 -5.03 16.58 16 19 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 20 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 21 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 22 C 0.15 3.18 6.69 -3.60 -0.02 3.15 16 23 C 0.04 0.73 5.46 -3.70 -0.02 0.71 16 24 C 0.11 1.56 5.23 -2.52 -0.01 1.55 16 25 H 0.06 0.58 8.10 -51.93 -0.42 0.16 16 26 H 0.06 0.36 8.14 -51.93 -0.42 -0.07 16 27 H 0.06 0.57 8.10 -51.93 -0.42 0.15 16 28 H 0.09 0.59 8.14 -51.93 -0.42 0.16 16 29 H 0.09 0.58 8.14 -51.93 -0.42 0.16 16 30 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 31 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 32 H 0.09 1.05 8.14 -51.93 -0.42 0.62 16 33 H 0.08 0.78 7.94 -51.93 -0.41 0.36 16 34 H 0.02 0.49 8.14 -51.93 -0.42 0.06 16 35 H 0.06 1.02 6.94 -51.93 -0.36 0.66 16 36 H 0.03 0.68 8.14 -51.92 -0.42 0.25 16 37 H 0.09 2.28 6.20 -51.93 -0.32 1.96 16 38 H 0.25 7.03 8.31 -40.82 -0.34 6.69 16 39 H 0.03 0.57 8.14 -51.93 -0.42 0.14 16 40 H 0.06 1.16 7.96 -51.93 -0.41 0.74 16 41 H 0.06 1.01 6.73 -51.93 -0.35 0.66 16 42 H 0.03 0.53 8.14 -51.93 -0.42 0.11 16 43 H 0.07 1.09 7.74 -51.93 -0.40 0.69 16 44 H 0.08 1.16 8.14 -51.93 -0.42 0.74 16 LS Contribution 342.95 15.07 5.17 5.17 Total: -1.00 -31.73 342.95 -9.54 -41.26 By element: Atomic # 1 Polarization: 4.52 SS G_CDS: -7.72 Total: -3.21 kcal Atomic # 6 Polarization: 8.37 SS G_CDS: -0.56 Total: 7.80 kcal Atomic # 7 Polarization: -57.23 SS G_CDS: -1.48 Total: -58.71 kcal Atomic # 8 Polarization: -8.99 SS G_CDS: 0.09 Total: -8.90 kcal Atomic # 14 Polarization: 21.61 SS G_CDS: -5.03 Total: 16.58 kcal Total LS contribution 5.17 Total: 5.17 kcal Total: -31.73 -9.54 -41.26 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001051957910.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.688 kcal (2) G-P(sol) polarization free energy of solvation -31.728 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.961 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.536 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.263 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.575 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds