Wall clock time and date at job start Tue Mar 31 2020 05:43:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.50703 * 109.47139 * 2 1 4 4 O 1.21281 * 120.00158 * 0.02562 * 3 2 1 5 5 N 1.34775 * 119.99900 * 179.97438 * 3 2 1 6 6 C 1.47029 * 125.64827 * 359.96286 * 5 3 2 7 7 C 1.54317 * 107.26989 * 178.97259 * 6 5 3 8 8 C 1.55158 * 102.94681 * 337.80852 * 7 6 5 9 9 H 1.08999 * 111.00340 * 277.43025 * 8 7 6 10 10 N 1.46899 * 111.03955 * 153.58852 * 8 7 6 11 11 C 1.46905 * 110.99990 * 188.90812 * 10 8 7 12 12 C 1.53229 * 109.33998 * 172.74698 * 11 10 8 13 13 N 1.47088 * 108.52232 * 53.83018 * 12 11 10 14 14 C 1.36935 * 120.88216 * 128.79185 * 13 12 11 15 15 H 1.07994 * 120.00277 * 206.59882 * 14 13 12 16 16 C 1.38820 * 119.99726 * 26.60078 * 14 13 12 17 17 N 1.31614 * 120.00233 * 17.00525 * 16 14 13 18 18 Si 1.86802 * 119.99617 * 197.01177 * 16 14 13 19 19 H 1.48500 * 109.47158 * 359.97438 * 18 16 14 20 20 H 1.48496 * 109.47423 * 119.99611 * 18 16 14 21 21 H 1.48501 * 109.46989 * 239.99917 * 18 16 14 22 22 C 1.47075 * 118.23585 * 308.81562 * 13 12 11 23 23 C 1.46897 * 110.99873 * 64.60677 * 10 8 7 24 24 C 1.47419 * 125.64952 * 180.02562 * 5 3 2 25 25 H 1.08997 * 109.47122 * 179.97438 * 1 2 3 26 26 H 1.09000 * 109.47394 * 300.00472 * 1 2 3 27 27 H 1.09003 * 109.46815 * 59.99465 * 1 2 3 28 28 H 1.08998 * 109.46816 * 240.00265 * 2 1 3 29 29 H 1.08998 * 109.46966 * 120.00080 * 2 1 3 30 30 H 1.08989 * 109.88235 * 298.39213 * 6 5 3 31 31 H 1.08998 * 109.87793 * 59.40331 * 6 5 3 32 32 H 1.08997 * 110.72165 * 219.44411 * 7 6 5 33 33 H 1.09004 * 110.72005 * 96.17265 * 7 6 5 34 34 H 1.08996 * 109.48984 * 292.70802 * 11 10 8 35 35 H 1.09004 * 109.48888 * 52.78736 * 11 10 8 36 36 H 1.09007 * 109.63282 * 294.11869 * 12 11 10 37 37 H 1.09001 * 109.63566 * 173.53968 * 12 11 10 38 38 H 0.96998 * 120.00262 * 179.97438 * 17 16 14 39 39 H 1.09010 * 109.63087 * 291.47652 * 22 13 12 40 40 H 1.08995 * 109.62932 * 170.89502 * 22 13 12 41 41 H 1.09001 * 109.49534 * 307.21376 * 23 10 8 42 42 H 1.09000 * 109.49358 * 67.26662 * 23 10 8 43 43 H 1.09002 * 110.36946 * 85.25483 * 24 5 3 44 44 H 1.09003 * 110.36449 * 322.93318 * 24 5 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 8 1.2443 2.3427 0.0005 5 7 3.3574 1.6671 0.0005 6 6 4.4182 0.6490 0.0019 7 6 5.7690 1.3947 -0.0244 8 6 5.3896 2.7805 -0.6101 9 1 5.3417 2.7448 -1.6985 10 7 6.3279 3.8177 -0.1610 11 6 5.8536 5.1559 -0.5383 12 6 6.7589 6.2141 0.1009 13 7 8.1524 5.9213 -0.2679 14 6 8.9563 6.8916 -0.8040 15 1 9.7781 6.6167 -1.4485 16 6 8.7148 8.2286 -0.5191 17 7 7.9532 8.5565 0.5030 18 14 9.4708 9.5622 -1.5865 19 1 10.2799 8.9357 -2.6626 20 1 8.3914 10.3828 -2.1921 21 1 10.3426 10.4285 -0.7529 22 6 8.6592 4.5586 -0.0460 23 6 7.6791 3.5654 -0.6794 24 6 3.9833 3.0018 0.0011 25 1 -0.3633 -1.0276 -0.0005 26 1 -0.3634 0.5139 0.8899 27 1 -0.3633 0.5139 -0.8900 28 1 1.8933 -0.5138 -0.8900 29 1 1.8933 -0.5138 0.8900 30 1 4.3477 0.0414 0.9040 31 1 4.3248 0.0152 -0.8800 32 1 6.4794 0.8830 -0.6736 33 1 6.1716 1.4990 0.9832 34 1 5.8826 5.2595 -1.6229 35 1 4.8308 5.2917 -0.1867 36 1 6.6524 6.1806 1.1852 37 1 6.4829 7.2025 -0.2666 38 1 7.7848 9.4907 0.7023 39 1 8.7353 4.3659 1.0242 40 1 9.6395 4.4523 -0.5106 41 1 7.9802 2.5479 -0.4301 42 1 7.6825 3.6908 -1.7621 43 1 4.0675 3.3809 1.0196 44 1 3.4063 3.6916 -0.6148 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001051957911.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:43:17 Heat of formation + Delta-G solvation = -2.721210 kcal Electronic energy + Delta-G solvation = -22809.302315 eV Core-core repulsion = 19569.235767 eV Total energy + Delta-G solvation = -3240.066548 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.184 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -40.24465 -38.54042 -36.81226 -34.18547 -32.98951 -31.55343 -30.74757 -29.70073 -28.65736 -26.21343 -24.61402 -23.28991 -22.85129 -21.93961 -20.38668 -19.17598 -19.11696 -17.35647 -17.09038 -16.35148 -15.70671 -15.10310 -14.81092 -14.41057 -14.17225 -14.05812 -13.61429 -13.41432 -13.40613 -13.11322 -12.93634 -12.53548 -12.43459 -12.35565 -11.94488 -11.75102 -11.44483 -11.41134 -11.19122 -11.04386 -10.89959 -10.74138 -10.42518 -10.30594 -10.03918 -9.92489 -9.73754 -9.58669 -8.74205 -8.51271 -7.91014 -6.67366 -5.78193 -3.19454 2.54047 2.83565 3.37286 3.45139 3.47048 4.21694 4.24638 4.50182 4.56798 4.67597 4.79676 4.84158 4.96541 5.17377 5.25375 5.31155 5.39668 5.43505 5.45505 5.53606 5.68526 5.71401 5.81303 5.84904 5.89956 5.93812 5.97492 6.06848 6.13283 6.16825 6.27566 6.32318 6.51365 6.67673 6.90377 7.22593 7.40610 7.55130 7.62706 7.68877 7.81240 8.07036 8.43238 9.21019 9.84485 10.42674 11.30617 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.034986 B = 0.003479 C = 0.003257 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 800.123867 B = 8047.470939 C = 8594.650707 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.139 4.139 3 C 0.524 3.476 4 O -0.542 6.542 5 N -0.620 5.620 6 C 0.103 3.897 7 C -0.123 4.123 8 C 0.069 3.931 9 H 0.050 0.950 10 N -0.521 5.521 11 C 0.032 3.968 12 C 0.179 3.821 13 N -0.596 5.596 14 C -0.252 4.252 15 H 0.066 0.934 16 C 0.001 3.999 17 N -0.902 5.902 18 Si 0.902 3.098 19 H -0.278 1.278 20 H -0.289 1.289 21 H -0.290 1.290 22 C 0.149 3.851 23 C 0.045 3.955 24 C 0.115 3.885 25 H 0.060 0.940 26 H 0.062 0.938 27 H 0.061 0.939 28 H 0.091 0.909 29 H 0.091 0.909 30 H 0.069 0.931 31 H 0.067 0.933 32 H 0.079 0.921 33 H 0.090 0.910 34 H 0.026 0.974 35 H 0.063 0.937 36 H 0.027 0.973 37 H 0.089 0.911 38 H 0.253 0.747 39 H 0.026 0.974 40 H 0.055 0.945 41 H 0.063 0.937 42 H 0.028 0.972 43 H 0.081 0.919 44 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.407 -19.349 -1.409 21.144 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.179 4.179 3 C 0.313 3.687 4 O -0.419 6.419 5 N -0.355 5.355 6 C -0.020 4.020 7 C -0.161 4.161 8 C -0.041 4.041 9 H 0.067 0.933 10 N -0.246 5.246 11 C -0.097 4.097 12 C 0.053 3.947 13 N -0.319 5.319 14 C -0.382 4.382 15 H 0.084 0.916 16 C -0.197 4.197 17 N -0.547 5.547 18 Si 0.732 3.268 19 H -0.203 1.203 20 H -0.216 1.216 21 H -0.217 1.217 22 C 0.022 3.978 23 C -0.084 4.084 24 C -0.008 4.008 25 H 0.079 0.921 26 H 0.081 0.919 27 H 0.080 0.920 28 H 0.109 0.891 29 H 0.110 0.890 30 H 0.088 0.912 31 H 0.085 0.915 32 H 0.098 0.902 33 H 0.108 0.892 34 H 0.044 0.956 35 H 0.081 0.919 36 H 0.045 0.955 37 H 0.107 0.893 38 H 0.064 0.936 39 H 0.044 0.956 40 H 0.074 0.926 41 H 0.081 0.919 42 H 0.046 0.954 43 H 0.099 0.901 44 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -8.913 -18.705 -0.848 20.737 hybrid contribution 0.437 0.718 -1.403 1.635 sum -8.476 -17.987 -2.250 20.011 Atomic orbital electron populations 1.21539 0.93027 1.01476 1.03448 1.21604 0.98482 0.93641 1.04138 1.20464 0.80345 0.91910 0.75989 1.90716 1.54331 1.46784 1.50056 1.48527 1.05123 1.08463 1.73377 1.22054 0.87136 0.91322 1.01509 1.22693 0.95373 0.94800 1.03272 1.22747 0.92098 0.92456 0.96823 0.93252 1.62026 1.01507 1.01712 1.59353 1.22960 0.99352 0.89182 0.98167 1.20862 0.82060 0.95373 0.96437 1.44134 1.08302 1.06019 1.73457 1.19222 1.11233 0.86064 1.21640 0.91621 1.25029 1.00076 0.97777 0.96868 1.70031 1.41702 1.16562 1.26387 0.86235 0.78488 0.82059 0.80059 1.20340 1.21575 1.21710 1.20970 0.94154 0.85491 0.97140 1.22631 0.89331 0.99369 0.97090 1.22240 0.92168 0.84211 1.02180 0.92111 0.91929 0.91990 0.89112 0.89031 0.91223 0.91512 0.90212 0.89170 0.95577 0.91892 0.95493 0.89303 0.93641 0.95646 0.92610 0.91855 0.95415 0.90123 0.90628 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.15 9.20 37.16 0.34 -0.81 16 2 C -0.14 -1.15 5.61 -27.88 -0.16 -1.30 16 3 C 0.52 6.72 7.85 -10.98 -0.09 6.63 16 4 O -0.54 -9.23 16.24 5.56 0.09 -9.14 16 5 N -0.62 -7.50 3.33 -170.51 -0.57 -8.07 16 6 C 0.10 0.90 6.49 -3.06 -0.02 0.88 16 7 C -0.12 -1.26 5.47 -24.90 -0.14 -1.39 16 8 C 0.07 0.93 2.71 -65.55 -0.18 0.75 16 9 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 10 N -0.52 -8.81 4.53 -223.77 -1.01 -9.82 16 11 C 0.03 0.63 5.46 -3.70 -0.02 0.61 16 12 C 0.18 4.31 5.42 -3.60 -0.02 4.29 16 13 N -0.60 -14.99 3.04 -172.01 -0.52 -15.52 16 14 C -0.25 -6.92 9.63 -15.06 -0.15 -7.07 16 15 H 0.07 1.77 7.88 -52.49 -0.41 1.36 16 16 C 0.00 0.03 4.94 -17.43 -0.09 -0.06 16 17 N -0.90 -26.29 11.15 55.49 0.62 -25.67 16 18 Si 0.90 21.74 29.59 -169.99 -5.03 16.71 16 19 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 20 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 21 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 22 C 0.15 3.09 6.69 -3.60 -0.02 3.07 16 23 C 0.05 0.77 5.50 -3.70 -0.02 0.75 16 24 C 0.11 1.62 5.19 -2.52 -0.01 1.60 16 25 H 0.06 0.37 8.14 -51.93 -0.42 -0.06 16 26 H 0.06 0.59 8.10 -51.93 -0.42 0.17 16 27 H 0.06 0.59 8.10 -51.93 -0.42 0.17 16 28 H 0.09 0.58 8.14 -51.93 -0.42 0.16 16 29 H 0.09 0.59 8.14 -51.93 -0.42 0.17 16 30 H 0.07 0.49 8.14 -51.94 -0.42 0.07 16 31 H 0.07 0.47 8.14 -51.93 -0.42 0.04 16 32 H 0.08 0.70 7.95 -51.93 -0.41 0.28 16 33 H 0.09 0.98 8.14 -51.93 -0.42 0.56 16 34 H 0.03 0.53 8.14 -51.93 -0.42 0.10 16 35 H 0.06 1.14 6.70 -51.93 -0.35 0.79 16 36 H 0.03 0.70 8.14 -51.93 -0.42 0.27 16 37 H 0.09 2.39 6.12 -51.93 -0.32 2.07 16 38 H 0.25 7.13 8.31 -40.82 -0.34 6.79 16 39 H 0.03 0.55 8.14 -51.92 -0.42 0.12 16 40 H 0.06 1.11 7.95 -51.93 -0.41 0.70 16 41 H 0.06 0.89 6.97 -51.93 -0.36 0.53 16 42 H 0.03 0.49 8.14 -51.93 -0.42 0.07 16 43 H 0.08 1.23 8.14 -51.93 -0.42 0.81 16 44 H 0.08 1.17 7.75 -51.93 -0.40 0.77 16 LS Contribution 342.87 15.07 5.17 5.17 Total: -1.00 -32.01 342.87 -9.54 -41.55 By element: Atomic # 1 Polarization: 4.56 SS G_CDS: -7.72 Total: -3.16 kcal Atomic # 6 Polarization: 8.52 SS G_CDS: -0.56 Total: 7.95 kcal Atomic # 7 Polarization: -57.60 SS G_CDS: -1.48 Total: -59.08 kcal Atomic # 8 Polarization: -9.23 SS G_CDS: 0.09 Total: -9.14 kcal Atomic # 14 Polarization: 21.74 SS G_CDS: -5.03 Total: 16.71 kcal Total LS contribution 5.17 Total: 5.17 kcal Total: -32.01 -9.54 -41.55 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001051957911.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.830 kcal (2) G-P(sol) polarization free energy of solvation -32.014 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.817 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.538 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.552 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.721 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds