Wall clock time and date at job start Tue Mar 31 2020 05:48:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08992 * 109.87558 * 2 1 4 4 C 1.54326 * 109.88286 * 121.01622 * 2 1 3 5 5 H 1.08991 * 110.72173 * 215.76526 * 4 2 1 6 6 N 1.46506 * 110.71868 * 338.86317 * 4 2 1 7 7 C 1.36938 * 119.99589 * 202.56076 * 6 4 2 8 8 H 1.07999 * 120.00325 * 359.97438 * 7 6 4 9 9 C 1.38815 * 119.99817 * 180.02562 * 7 6 4 10 10 N 1.31621 * 119.99673 * 359.71804 * 9 7 6 11 11 Si 1.86795 * 120.00115 * 179.97438 * 9 7 6 12 12 H 1.48502 * 109.47274 * 89.99913 * 11 9 7 13 13 H 1.48505 * 109.47015 * 209.99478 * 11 9 7 14 14 H 1.48498 * 109.47362 * 329.99904 * 11 9 7 15 15 C 1.55164 * 103.10244 * 97.31229 * 4 2 1 16 16 C 1.55124 * 101.48397 * 35.28148 * 15 4 2 17 17 N 1.47026 * 109.88173 * 238.82098 * 2 1 3 18 18 C 1.34777 * 125.64362 * 59.56424 * 17 2 1 19 19 O 1.21281 * 120.00288 * 359.97438 * 18 17 2 20 20 C 1.50699 * 119.99685 * 179.97438 * 18 17 2 21 21 H 1.09003 * 109.90710 * 318.89678 * 20 18 17 22 22 C 1.53994 * 109.92043 * 79.99846 * 20 18 17 23 23 C 1.54594 * 105.14221 * 120.57512 * 22 20 18 24 24 C 1.54937 * 102.91973 * 21.96032 * 23 22 20 25 25 N 1.47901 * 109.91558 * 197.58736 * 20 18 17 26 26 C 1.46902 * 110.99786 * 94.80343 * 25 20 18 27 27 H 1.09002 * 109.47107 * 298.98173 * 1 2 3 28 28 H 1.08998 * 109.47063 * 58.98814 * 1 2 3 29 29 H 1.08998 * 109.46919 * 178.98448 * 1 2 3 30 30 H 0.96999 * 120.00080 * 22.55565 * 6 4 2 31 31 H 0.97000 * 120.00043 * 180.02562 * 10 9 7 32 32 H 1.08995 * 110.99898 * 153.49087 * 15 4 2 33 33 H 1.09003 * 111.00223 * 277.33584 * 15 4 2 34 34 H 1.08999 * 110.41623 * 204.29309 * 16 15 4 35 35 H 1.09001 * 110.29470 * 82.09080 * 16 15 4 36 36 H 1.09000 * 110.30642 * 239.49647 * 22 20 18 37 37 H 1.09006 * 110.30599 * 1.55776 * 22 20 18 38 38 H 1.08997 * 110.71994 * 140.31284 * 23 22 20 39 39 H 1.08997 * 110.72397 * 263.60028 * 23 22 20 40 40 H 1.09006 * 110.67060 * 81.01746 * 24 23 22 41 41 H 1.08997 * 110.66858 * 204.14956 * 24 23 22 42 42 H 1.09001 * 109.47387 * 60.00281 * 26 25 20 43 43 H 1.09003 * 109.47234 * 179.97438 * 26 25 20 44 44 H 1.08992 * 109.47248 * 299.99705 * 26 25 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9006 1.0250 0.0000 4 6 2.0549 -0.7478 1.2438 5 1 2.9639 -0.2791 1.6205 6 7 1.0292 -0.7995 2.2886 7 6 1.3925 -0.9839 3.5960 8 1 2.4350 -1.0917 3.8568 9 6 0.4207 -1.0334 4.5860 10 7 -0.8495 -0.8975 4.2687 11 14 0.9160 -1.2857 6.3693 12 1 1.1481 0.0337 7.0101 13 1 -0.1690 -2.0010 7.0880 14 1 2.1627 -2.0904 6.4277 15 6 2.3554 -2.1692 0.6988 16 6 2.8568 -1.8509 -0.7342 17 7 2.0300 -0.7158 -1.1829 18 6 1.7754 -0.3879 -2.4651 19 8 1.0785 0.5718 -2.7188 20 6 2.3565 -1.2139 -3.5837 21 1 3.3862 -1.4840 -3.3493 22 6 1.5139 -2.4865 -3.7886 23 6 1.0163 -2.4103 -5.2503 24 6 2.0376 -1.4531 -5.9145 25 7 2.3070 -0.4522 -4.8506 26 6 3.5759 0.2467 -5.0944 27 1 -0.3633 0.4979 0.8990 28 1 -0.3633 0.5295 -0.8808 29 1 -0.3633 -1.0275 -0.0182 30 1 0.0929 -0.7029 2.0544 31 1 -1.5286 -0.9317 4.9605 32 1 3.1316 -2.6574 1.2880 33 1 1.4501 -2.7756 0.6690 34 1 2.7088 -2.7100 -1.3885 35 1 3.9093 -1.5684 -0.7125 36 1 2.1290 -3.3747 -3.6441 37 1 0.6692 -2.4959 -3.0997 38 1 1.0472 -3.3934 -5.7199 39 1 0.0107 -1.9922 -5.2940 40 1 2.9498 -1.9876 -6.1798 41 1 1.6021 -0.9744 -6.7916 42 1 4.3855 -0.4806 -5.1553 43 1 3.5124 0.7984 -6.0324 44 1 3.7715 0.9405 -4.2770 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001074561838.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:48:14 Heat of formation + Delta-G solvation = -2.281233 kcal Electronic energy + Delta-G solvation = -23237.652295 eV Core-core repulsion = 19997.604826 eV Total energy + Delta-G solvation = -3240.047469 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.184 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.37026 -38.67872 -36.90878 -34.15891 -32.43384 -31.71714 -30.67088 -29.81311 -28.34702 -25.85921 -25.17645 -23.70835 -22.86884 -21.54473 -21.37975 -19.39249 -18.49955 -17.58309 -17.07587 -16.07547 -15.82109 -15.38202 -14.61402 -14.50248 -14.25986 -14.00891 -13.81762 -13.60239 -13.26089 -12.80596 -12.68771 -12.46934 -12.17921 -11.94178 -11.80713 -11.73819 -11.55025 -11.47684 -11.22298 -11.14911 -10.98358 -10.94684 -10.80068 -10.43727 -10.19940 -9.97595 -9.70530 -9.38150 -8.94819 -8.54973 -8.30037 -7.02089 -5.81540 -3.11280 2.88776 3.07312 3.41125 3.46336 3.48055 3.90548 4.38865 4.42737 4.55394 4.67640 4.82244 4.97776 5.06239 5.17734 5.18427 5.26674 5.30618 5.37622 5.45278 5.56053 5.56899 5.59816 5.64365 5.67551 5.71424 5.84674 5.86544 5.96306 6.09170 6.13427 6.25900 6.34675 6.54432 6.58236 6.61821 6.76498 6.77908 6.91286 7.02117 7.66139 7.87227 8.36944 8.53248 9.48624 10.04126 10.39191 11.40956 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.038219 B = 0.003691 C = 0.003670 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 732.444832 B = 7584.802071 C = 7627.238897 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.130 3.870 3 H 0.069 0.931 4 C 0.173 3.827 5 H 0.063 0.937 6 N -0.717 5.717 7 C -0.245 4.245 8 H 0.071 0.929 9 C -0.010 4.010 10 N -0.931 5.931 11 Si 0.908 3.092 12 H -0.289 1.289 13 H -0.291 1.291 14 H -0.282 1.282 15 C -0.152 4.152 16 C 0.097 3.903 17 N -0.613 5.613 18 C 0.534 3.466 19 O -0.519 6.519 20 C 0.053 3.947 21 H 0.071 0.929 22 C -0.119 4.119 23 C -0.122 4.122 24 C 0.036 3.964 25 N -0.499 5.499 26 C 0.019 3.981 27 H 0.079 0.921 28 H 0.059 0.941 29 H 0.054 0.946 30 H 0.391 0.609 31 H 0.256 0.744 32 H 0.075 0.925 33 H 0.074 0.926 34 H 0.066 0.934 35 H 0.062 0.938 36 H 0.076 0.924 37 H 0.079 0.921 38 H 0.075 0.925 39 H 0.078 0.922 40 H 0.045 0.955 41 H 0.085 0.915 42 H 0.027 0.973 43 H 0.072 0.928 44 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.863 -4.254 -18.787 21.204 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.026 3.974 3 H 0.087 0.913 4 C 0.061 3.939 5 H 0.081 0.919 6 N -0.360 5.360 7 C -0.376 4.376 8 H 0.089 0.911 9 C -0.207 4.207 10 N -0.579 5.579 11 Si 0.739 3.261 12 H -0.217 1.217 13 H -0.218 1.218 14 H -0.207 1.207 15 C -0.194 4.194 16 C -0.026 4.026 17 N -0.349 5.349 18 C 0.320 3.680 19 O -0.393 6.393 20 C -0.060 4.060 21 H 0.089 0.911 22 C -0.158 4.158 23 C -0.160 4.160 24 C -0.091 4.091 25 N -0.223 5.223 26 C -0.130 4.130 27 H 0.097 0.903 28 H 0.078 0.922 29 H 0.073 0.927 30 H 0.229 0.771 31 H 0.066 0.934 32 H 0.093 0.907 33 H 0.093 0.907 34 H 0.084 0.916 35 H 0.080 0.920 36 H 0.095 0.905 37 H 0.097 0.903 38 H 0.094 0.906 39 H 0.097 0.903 40 H 0.064 0.936 41 H 0.104 0.896 42 H 0.045 0.955 43 H 0.091 0.909 44 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 8.117 -3.294 -18.802 20.743 hybrid contribution 0.753 -0.807 0.995 1.486 sum 8.870 -4.101 -17.808 20.313 Atomic orbital electron populations 1.21996 0.94655 1.02264 1.02679 1.21807 0.95358 0.95679 0.84536 0.91277 1.21180 0.93178 0.92043 0.87464 0.91904 1.42677 1.04795 1.86333 1.02237 1.19249 0.92734 1.42084 0.83521 0.91080 1.24753 0.95253 1.02581 0.98087 1.69661 0.99093 1.56670 1.32441 0.86179 0.77202 0.77658 0.85044 1.21671 1.21778 1.20736 1.23574 1.01617 1.01335 0.92853 1.22389 0.94428 0.88564 0.97258 1.48622 1.50687 1.30606 1.04936 1.19918 0.81295 0.85034 0.81717 1.90670 1.37591 1.28180 1.82866 1.22328 0.99452 0.93253 0.90922 0.91081 1.22336 0.99974 0.95329 0.98155 1.22484 0.99907 0.99208 0.94387 1.23268 0.98037 0.92634 0.95177 1.64320 1.32531 1.25065 1.00365 1.22524 0.89089 0.98566 1.02826 0.90269 0.92160 0.92685 0.77085 0.93373 0.90656 0.90709 0.91600 0.91997 0.90505 0.90254 0.90648 0.90291 0.93641 0.89633 0.95458 0.90897 0.91242 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.06 7.94 37.16 0.30 -2.77 16 2 C 0.13 2.36 3.48 -66.95 -0.23 2.13 16 3 H 0.07 1.30 8.14 -51.93 -0.42 0.88 16 4 C 0.17 3.34 3.46 -66.09 -0.23 3.11 16 5 H 0.06 1.21 8.11 -51.93 -0.42 0.79 16 6 N -0.72 -17.38 4.98 -51.65 -0.26 -17.64 16 7 C -0.24 -6.57 9.97 -15.06 -0.15 -6.72 16 8 H 0.07 1.84 7.83 -52.49 -0.41 1.42 16 9 C -0.01 -0.29 5.50 -17.43 -0.10 -0.39 16 10 N -0.93 -27.60 13.06 55.49 0.72 -26.87 16 11 Si 0.91 21.91 29.55 -169.99 -5.02 16.89 16 12 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 13 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 14 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 15 C -0.15 -2.47 6.79 -24.46 -0.17 -2.64 16 16 C 0.10 1.27 6.43 -2.42 -0.02 1.26 16 17 N -0.61 -9.64 3.08 -162.88 -0.50 -10.14 16 18 C 0.53 8.64 6.67 -10.99 -0.07 8.56 16 19 O -0.52 -10.39 15.46 5.56 0.09 -10.30 16 20 C 0.05 0.65 2.11 -67.80 -0.14 0.50 16 21 H 0.07 0.77 7.34 -51.93 -0.38 0.39 16 22 C -0.12 -1.24 5.80 -25.38 -0.15 -1.39 16 23 C -0.12 -1.11 7.06 -24.87 -0.18 -1.28 16 24 C 0.04 0.34 6.56 -1.90 -0.01 0.32 16 25 N -0.50 -6.10 4.75 -232.16 -1.10 -7.21 16 26 C 0.02 0.19 9.40 60.07 0.56 0.75 16 27 H 0.08 1.67 6.72 -51.93 -0.35 1.32 16 28 H 0.06 1.19 6.77 -51.93 -0.35 0.84 16 29 H 0.05 1.08 8.06 -51.93 -0.42 0.66 16 30 H 0.39 10.06 4.99 -40.82 -0.20 9.85 16 31 H 0.26 7.38 8.31 -40.82 -0.34 7.04 16 32 H 0.07 1.16 8.14 -51.93 -0.42 0.73 16 33 H 0.07 1.33 8.14 -51.93 -0.42 0.90 16 34 H 0.07 0.72 7.01 -51.93 -0.36 0.36 16 35 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 36 H 0.08 0.63 8.14 -51.93 -0.42 0.21 16 37 H 0.08 0.96 7.68 -51.93 -0.40 0.56 16 38 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 39 H 0.08 0.80 8.14 -51.93 -0.42 0.38 16 40 H 0.05 0.35 7.96 -51.93 -0.41 -0.06 16 41 H 0.09 0.73 8.14 -51.93 -0.42 0.31 16 42 H 0.03 0.23 8.01 -51.93 -0.42 -0.18 16 43 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 44 H 0.07 0.79 8.14 -51.93 -0.42 0.36 16 LS Contribution 343.58 15.07 5.18 5.18 Total: -1.00 -31.79 343.58 -8.97 -40.76 By element: Atomic # 1 Polarization: 15.37 SS G_CDS: -7.49 Total: 7.88 kcal Atomic # 6 Polarization: 2.04 SS G_CDS: -0.58 Total: 1.46 kcal Atomic # 7 Polarization: -60.72 SS G_CDS: -1.14 Total: -61.86 kcal Atomic # 8 Polarization: -10.39 SS G_CDS: 0.09 Total: -10.30 kcal Atomic # 14 Polarization: 21.91 SS G_CDS: -5.02 Total: 16.89 kcal Total LS contribution 5.18 Total: 5.18 kcal Total: -31.79 -8.97 -40.76 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001074561838.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.478 kcal (2) G-P(sol) polarization free energy of solvation -31.789 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.689 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.970 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.759 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.281 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds