Wall clock time and date at job start Tue Mar 31 2020 05:48:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09008 * 109.99582 * 2 1 4 4 C 1.54322 * 109.88240 * 121.09542 * 2 1 3 5 5 H 1.08999 * 110.71880 * 260.15064 * 4 2 1 6 6 N 1.46492 * 110.72222 * 23.24998 * 4 2 1 7 7 C 1.36929 * 120.00285 * 202.55865 * 6 4 2 8 8 H 1.08004 * 120.00210 * 359.97438 * 7 6 4 9 9 C 1.38813 * 120.00256 * 180.27626 * 7 6 4 10 10 N 1.31622 * 120.00099 * 359.72263 * 9 7 6 11 11 Si 1.86806 * 120.00186 * 179.72295 * 9 7 6 12 12 H 1.48498 * 109.47005 * 59.99589 * 11 9 7 13 13 H 1.48492 * 109.47139 * 180.02562 * 11 9 7 14 14 H 1.48501 * 109.47082 * 299.99955 * 11 9 7 15 15 C 1.55158 * 103.09977 * 141.70154 * 4 2 1 16 16 C 1.54906 * 101.58240 * 324.41006 * 15 4 2 17 17 N 1.47428 * 104.83476 * 37.00987 * 16 15 4 18 18 C 1.34768 * 125.65257 * 155.91378 * 17 16 15 19 19 O 1.21286 * 120.00431 * 179.97438 * 18 17 16 20 20 C 1.50705 * 120.00196 * 359.97438 * 18 17 16 21 21 H 1.09004 * 109.87238 * 6.84313 * 20 18 17 22 22 C 1.54311 * 109.89230 * 245.81810 * 20 18 17 23 23 C 1.55394 * 102.89978 * 218.40452 * 22 20 18 24 24 C 1.54903 * 101.74088 * 35.47830 * 23 22 20 25 25 N 1.47437 * 109.89123 * 127.87223 * 20 18 17 26 26 C 1.46901 * 110.99773 * 356.15651 * 25 20 18 27 27 H 1.09002 * 109.47660 * 298.90153 * 1 2 3 28 28 H 1.08999 * 109.47543 * 58.90153 * 1 2 3 29 29 H 1.09004 * 109.47487 * 178.90442 * 1 2 3 30 30 H 0.97000 * 119.99843 * 22.55766 * 6 4 2 31 31 H 0.97001 * 120.00104 * 180.02562 * 10 9 7 32 32 H 1.08999 * 111.00577 * 82.48252 * 15 4 2 33 33 H 1.09001 * 111.00842 * 206.33183 * 15 4 2 34 34 H 1.09002 * 110.36806 * 155.84698 * 16 15 4 35 35 H 1.08995 * 110.36817 * 278.16897 * 16 15 4 36 36 H 1.09004 * 110.70355 * 336.68799 * 22 20 18 37 37 H 1.08996 * 110.71105 * 99.92039 * 22 20 18 38 38 H 1.08994 * 110.87131 * 277.39046 * 23 22 20 39 39 H 1.09002 * 111.05812 * 153.64788 * 23 22 20 40 40 H 1.09004 * 110.37693 * 204.18910 * 24 23 22 41 41 H 1.09004 * 110.37746 * 81.85020 * 24 23 22 42 42 H 1.09003 * 109.47525 * 69.61274 * 26 25 20 43 43 H 1.09001 * 109.47069 * 189.61414 * 26 25 20 44 44 H 1.08996 * 109.47196 * 309.60950 * 26 25 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.9027 1.0244 0.0000 4 6 2.0548 -0.7495 1.2427 5 1 2.3499 -0.0460 2.0212 6 7 1.0472 -1.6855 1.7474 7 6 1.0905 -2.1006 3.0515 8 1 1.8678 -1.7382 3.7081 9 6 0.1392 -2.9920 3.5282 10 7 -0.8078 -3.4340 2.7281 11 14 0.2029 -3.5642 5.3053 12 1 0.0796 -2.3913 6.2077 13 1 -0.9154 -4.5068 5.5622 14 1 1.4956 -4.2498 5.5586 15 6 3.2897 -1.5140 0.6968 16 6 2.8201 -1.8830 -0.7325 17 7 2.0352 -0.7196 -1.1841 18 6 1.8148 -0.3709 -2.4671 19 8 1.1502 0.6108 -2.7232 20 6 2.3941 -1.2007 -3.5838 21 1 2.8537 -2.1012 -3.1762 22 6 3.4462 -0.3787 -4.3575 23 6 3.2038 -0.8051 -5.8320 24 6 1.6660 -0.9895 -5.8581 25 7 1.3326 -1.5676 -4.5389 26 6 0.0208 -1.0970 -4.0743 27 1 -0.3634 0.4967 0.8997 28 1 -0.3634 0.5308 -0.8799 29 1 -0.3634 -1.0275 -0.0196 30 1 0.3493 -2.0113 1.1577 31 1 -1.4728 -4.0566 3.0613 32 1 4.1668 -0.8676 0.6652 33 1 3.4872 -2.4092 1.2865 34 1 3.6788 -2.0379 -1.3858 35 1 2.1953 -2.7758 -0.7079 36 1 3.2692 0.6895 -4.2317 37 1 4.4539 -0.6436 -4.0376 38 1 3.7133 -1.7428 -6.0537 39 1 3.5149 -0.0213 -6.5226 40 1 1.3794 -1.6746 -6.6560 41 1 1.1705 -0.0272 -5.9870 42 1 -0.0174 -0.0094 -4.1347 43 1 -0.7614 -1.5235 -4.7022 44 1 -0.1321 -1.4091 -3.0412 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001074561839.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:48:17 Heat of formation + Delta-G solvation = 1.212858 kcal Electronic energy + Delta-G solvation = -23643.038019 eV Core-core repulsion = 20403.142065 eV Total energy + Delta-G solvation = -3239.895954 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.184 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.69998 -38.65625 -36.80756 -34.01484 -32.14957 -31.73290 -30.82849 -29.70957 -28.39521 -25.58017 -25.23260 -23.69207 -23.07844 -21.42064 -21.30752 -19.36126 -18.39075 -17.62487 -17.06735 -16.21859 -15.65640 -15.48736 -14.80081 -14.48519 -14.20029 -13.88817 -13.78332 -13.27796 -13.05031 -12.83280 -12.75983 -12.38762 -12.22456 -11.95427 -11.67921 -11.51923 -11.41241 -11.25016 -11.09237 -10.99514 -10.94332 -10.92034 -10.72886 -10.62759 -10.26336 -10.07269 -9.70570 -9.61764 -8.96491 -8.45939 -8.10834 -7.04168 -5.82681 -3.12478 2.70740 3.22021 3.40492 3.45497 3.46447 4.00734 4.38784 4.52123 4.53979 4.66387 4.94560 5.06954 5.20674 5.28250 5.31134 5.44607 5.50695 5.57062 5.59864 5.62604 5.63046 5.68720 5.74110 5.75909 5.81655 5.96242 5.99376 6.01404 6.10675 6.20400 6.34204 6.40963 6.50299 6.59711 6.72513 6.80068 6.85551 6.91209 6.99464 7.64636 7.83385 8.35090 8.37451 9.47086 10.02238 10.37302 11.39432 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.030974 B = 0.004225 C = 0.004117 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 903.761882 B = 6624.980457 C = 6799.752183 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.126 3.874 3 H 0.070 0.930 4 C 0.171 3.829 5 H 0.068 0.932 6 N -0.713 5.713 7 C -0.246 4.246 8 H 0.071 0.929 9 C -0.008 4.008 10 N -0.930 5.930 11 Si 0.907 3.093 12 H -0.286 1.286 13 H -0.291 1.291 14 H -0.286 1.286 15 C -0.159 4.159 16 C 0.104 3.896 17 N -0.603 5.603 18 C 0.517 3.483 19 O -0.547 6.547 20 C 0.053 3.947 21 H 0.102 0.898 22 C -0.127 4.127 23 C -0.126 4.126 24 C 0.038 3.962 25 N -0.509 5.509 26 C 0.006 3.994 27 H 0.066 0.934 28 H 0.052 0.948 29 H 0.065 0.935 30 H 0.388 0.612 31 H 0.257 0.743 32 H 0.060 0.940 33 H 0.088 0.912 34 H 0.065 0.935 35 H 0.073 0.927 36 H 0.076 0.924 37 H 0.079 0.921 38 H 0.077 0.923 39 H 0.076 0.924 40 H 0.082 0.918 41 H 0.050 0.950 42 H 0.064 0.936 43 H 0.061 0.939 44 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.824 4.843 -14.563 17.703 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C 0.023 3.977 3 H 0.088 0.912 4 C 0.059 3.941 5 H 0.086 0.914 6 N -0.356 5.356 7 C -0.377 4.377 8 H 0.089 0.911 9 C -0.205 4.205 10 N -0.578 5.578 11 Si 0.738 3.262 12 H -0.212 1.212 13 H -0.217 1.217 14 H -0.212 1.212 15 C -0.200 4.200 16 C -0.018 4.018 17 N -0.337 5.337 18 C 0.305 3.695 19 O -0.426 6.426 20 C -0.059 4.059 21 H 0.120 0.880 22 C -0.166 4.166 23 C -0.164 4.164 24 C -0.089 4.089 25 N -0.234 5.234 26 C -0.142 4.142 27 H 0.085 0.915 28 H 0.071 0.929 29 H 0.084 0.916 30 H 0.225 0.775 31 H 0.067 0.933 32 H 0.079 0.921 33 H 0.107 0.893 34 H 0.083 0.917 35 H 0.091 0.909 36 H 0.094 0.906 37 H 0.098 0.902 38 H 0.096 0.904 39 H 0.094 0.906 40 H 0.100 0.900 41 H 0.069 0.931 42 H 0.082 0.918 43 H 0.080 0.920 44 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 8.396 4.784 -14.606 17.513 hybrid contribution -0.211 0.185 0.979 1.018 sum 8.185 4.968 -13.627 16.655 Atomic orbital electron populations 1.21904 0.94237 1.02873 1.01605 1.22076 0.95384 0.95496 0.84781 0.91240 1.21191 0.89166 0.91654 0.92072 0.91428 1.42555 1.30999 1.51629 1.10423 1.19187 1.09986 1.21166 0.87328 0.91102 1.24739 0.97750 1.00019 0.97980 1.69650 1.17191 1.36089 1.34857 0.86272 0.76949 0.78234 0.84713 1.21242 1.21726 1.21250 1.23512 0.99212 1.02382 0.94906 1.22333 0.94455 0.88889 0.96150 1.48882 1.51416 1.28439 1.04924 1.20573 0.80824 0.85374 0.82729 1.90628 1.40508 1.28457 1.82977 1.22655 0.93456 0.97975 0.91779 0.88002 1.22767 0.98452 1.00394 0.95009 1.22731 0.95866 1.01867 0.95945 1.23146 0.95392 0.98503 0.91884 1.64041 1.02050 1.55768 1.01506 1.22946 0.89835 1.00693 1.00732 0.91456 0.92851 0.91579 0.77504 0.93347 0.92098 0.89344 0.91683 0.90865 0.90558 0.90186 0.90433 0.90582 0.89955 0.93122 0.91766 0.92008 0.91554 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.81 8.48 37.15 0.32 -2.50 16 2 C 0.13 2.22 3.45 -66.70 -0.23 1.99 16 3 H 0.07 1.18 8.14 -51.92 -0.42 0.76 16 4 C 0.17 3.22 3.46 -66.10 -0.23 2.99 16 5 H 0.07 1.26 8.11 -51.93 -0.42 0.84 16 6 N -0.71 -16.75 4.61 -51.66 -0.24 -16.99 16 7 C -0.25 -6.45 9.97 -15.06 -0.15 -6.60 16 8 H 0.07 1.80 7.83 -52.48 -0.41 1.38 16 9 C -0.01 -0.23 5.50 -17.43 -0.10 -0.33 16 10 N -0.93 -27.24 13.06 55.49 0.72 -26.52 16 11 Si 0.91 21.71 29.55 -169.99 -5.02 16.69 16 12 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 13 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 14 H -0.29 -6.72 7.11 56.52 0.40 -6.32 16 15 C -0.16 -2.53 6.77 -24.58 -0.17 -2.70 16 16 C 0.10 1.57 6.30 -2.53 -0.02 1.55 16 17 N -0.60 -9.79 3.08 -162.67 -0.50 -10.29 16 18 C 0.52 8.32 4.75 -10.99 -0.05 8.27 16 19 O -0.55 -10.10 12.84 5.55 0.07 -10.03 16 20 C 0.05 0.70 3.57 -67.88 -0.24 0.46 16 21 H 0.10 1.29 6.26 -51.93 -0.32 0.97 16 22 C -0.13 -1.38 6.48 -24.77 -0.16 -1.54 16 23 C -0.13 -1.15 7.08 -24.46 -0.17 -1.32 16 24 C 0.04 0.42 6.73 -2.30 -0.02 0.40 16 25 N -0.51 -6.89 5.44 -232.95 -1.27 -8.16 16 26 C 0.01 0.09 8.18 60.07 0.49 0.58 16 27 H 0.07 1.30 8.14 -51.93 -0.42 0.88 16 28 H 0.05 1.01 6.93 -51.93 -0.36 0.65 16 29 H 0.07 1.40 6.21 -51.93 -0.32 1.07 16 30 H 0.39 9.86 5.58 -40.82 -0.23 9.63 16 31 H 0.26 7.35 8.31 -40.82 -0.34 7.01 16 32 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 33 H 0.09 1.54 8.14 -51.93 -0.42 1.11 16 34 H 0.06 0.79 7.08 -51.93 -0.37 0.42 16 35 H 0.07 1.23 8.14 -51.93 -0.42 0.81 16 36 H 0.08 0.93 7.71 -51.93 -0.40 0.53 16 37 H 0.08 0.72 8.14 -51.93 -0.42 0.30 16 38 H 0.08 0.64 8.14 -51.93 -0.42 0.21 16 39 H 0.08 0.58 8.14 -51.93 -0.42 0.15 16 40 H 0.08 0.78 8.14 -51.93 -0.42 0.36 16 41 H 0.05 0.57 7.63 -51.93 -0.40 0.18 16 42 H 0.06 1.04 5.80 -51.93 -0.30 0.73 16 43 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 44 H 0.07 1.12 6.95 -51.93 -0.36 0.76 16 LS Contribution 336.44 15.07 5.07 5.07 Total: -1.00 -29.63 336.44 -9.15 -38.78 By element: Atomic # 1 Polarization: 17.46 SS G_CDS: -7.26 Total: 10.20 kcal Atomic # 6 Polarization: 1.97 SS G_CDS: -0.72 Total: 1.24 kcal Atomic # 7 Polarization: -60.67 SS G_CDS: -1.28 Total: -61.95 kcal Atomic # 8 Polarization: -10.10 SS G_CDS: 0.07 Total: -10.03 kcal Atomic # 14 Polarization: 21.71 SS G_CDS: -5.02 Total: 16.69 kcal Total LS contribution 5.07 Total: 5.07 kcal Total: -29.63 -9.15 -38.78 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001074561839.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.990 kcal (2) G-P(sol) polarization free energy of solvation -29.632 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.358 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.145 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.777 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.213 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds