Wall clock time and date at job start Tue Mar 31 2020 05:48:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09008 * 109.99582 * 2 1 4 4 C 1.54322 * 109.88240 * 121.09542 * 2 1 3 5 5 H 1.08999 * 110.71880 * 260.15064 * 4 2 1 6 6 N 1.46492 * 110.72222 * 23.24998 * 4 2 1 7 7 C 1.36929 * 120.00285 * 202.55865 * 6 4 2 8 8 H 1.08004 * 120.00210 * 359.97438 * 7 6 4 9 9 C 1.38813 * 120.00256 * 180.27626 * 7 6 4 10 10 N 1.31622 * 120.00099 * 359.72263 * 9 7 6 11 11 Si 1.86806 * 120.00186 * 179.72295 * 9 7 6 12 12 H 1.48498 * 109.47005 * 59.99589 * 11 9 7 13 13 H 1.48492 * 109.47139 * 180.02562 * 11 9 7 14 14 H 1.48501 * 109.47082 * 299.99955 * 11 9 7 15 15 C 1.55158 * 103.09977 * 141.70154 * 4 2 1 16 16 C 1.54906 * 101.58240 * 324.41006 * 15 4 2 17 17 N 1.47428 * 104.83476 * 37.00987 * 16 15 4 18 18 C 1.34768 * 125.65257 * 155.91378 * 17 16 15 19 19 O 1.21286 * 120.00431 * 179.97438 * 18 17 16 20 20 C 1.50705 * 120.00196 * 359.97438 * 18 17 16 21 21 H 1.09004 * 109.87238 * 6.84313 * 20 18 17 22 22 C 1.54311 * 109.89230 * 245.81810 * 20 18 17 23 23 C 1.55394 * 102.89978 * 218.40452 * 22 20 18 24 24 C 1.54903 * 101.74088 * 35.47830 * 23 22 20 25 25 N 1.47437 * 109.89123 * 127.87223 * 20 18 17 26 26 C 1.46901 * 110.99773 * 356.15651 * 25 20 18 27 27 H 1.09002 * 109.47660 * 298.90153 * 1 2 3 28 28 H 1.08999 * 109.47543 * 58.90153 * 1 2 3 29 29 H 1.09004 * 109.47487 * 178.90442 * 1 2 3 30 30 H 0.97000 * 119.99843 * 22.55766 * 6 4 2 31 31 H 0.97001 * 120.00104 * 180.02562 * 10 9 7 32 32 H 1.08999 * 111.00577 * 82.48252 * 15 4 2 33 33 H 1.09001 * 111.00842 * 206.33183 * 15 4 2 34 34 H 1.09002 * 110.36806 * 155.84698 * 16 15 4 35 35 H 1.08995 * 110.36817 * 278.16897 * 16 15 4 36 36 H 1.09004 * 110.70355 * 336.68799 * 22 20 18 37 37 H 1.08996 * 110.71105 * 99.92039 * 22 20 18 38 38 H 1.08994 * 110.87131 * 277.39046 * 23 22 20 39 39 H 1.09002 * 111.05812 * 153.64788 * 23 22 20 40 40 H 1.09004 * 110.37693 * 204.18910 * 24 23 22 41 41 H 1.09004 * 110.37746 * 81.85020 * 24 23 22 42 42 H 1.09003 * 109.47525 * 69.61274 * 26 25 20 43 43 H 1.09001 * 109.47069 * 189.61414 * 26 25 20 44 44 H 1.08996 * 109.47196 * 309.60950 * 26 25 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.9027 1.0244 0.0000 4 6 2.0548 -0.7495 1.2427 5 1 2.3499 -0.0460 2.0212 6 7 1.0472 -1.6855 1.7474 7 6 1.0905 -2.1006 3.0515 8 1 1.8678 -1.7382 3.7081 9 6 0.1392 -2.9920 3.5282 10 7 -0.8078 -3.4340 2.7281 11 14 0.2029 -3.5642 5.3053 12 1 0.0796 -2.3913 6.2077 13 1 -0.9154 -4.5068 5.5622 14 1 1.4956 -4.2498 5.5586 15 6 3.2897 -1.5140 0.6968 16 6 2.8201 -1.8830 -0.7325 17 7 2.0352 -0.7196 -1.1841 18 6 1.8148 -0.3709 -2.4671 19 8 1.1502 0.6108 -2.7232 20 6 2.3941 -1.2007 -3.5838 21 1 2.8537 -2.1012 -3.1762 22 6 3.4462 -0.3787 -4.3575 23 6 3.2038 -0.8051 -5.8320 24 6 1.6660 -0.9895 -5.8581 25 7 1.3326 -1.5676 -4.5389 26 6 0.0208 -1.0970 -4.0743 27 1 -0.3634 0.4967 0.8997 28 1 -0.3634 0.5308 -0.8799 29 1 -0.3634 -1.0275 -0.0196 30 1 0.3493 -2.0113 1.1577 31 1 -1.4728 -4.0566 3.0613 32 1 4.1668 -0.8676 0.6652 33 1 3.4872 -2.4092 1.2865 34 1 3.6788 -2.0379 -1.3858 35 1 2.1953 -2.7758 -0.7079 36 1 3.2692 0.6895 -4.2317 37 1 4.4539 -0.6436 -4.0376 38 1 3.7133 -1.7428 -6.0537 39 1 3.5149 -0.0213 -6.5226 40 1 1.3794 -1.6746 -6.6560 41 1 1.1705 -0.0272 -5.9870 42 1 -0.0174 -0.0094 -4.1347 43 1 -0.7614 -1.5235 -4.7022 44 1 -0.1321 -1.4091 -3.0412 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001074561839.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:48:16 Heat of formation + Delta-G solvation = -19.031967 kcal Electronic energy + Delta-G solvation = -23643.915900 eV Core-core repulsion = 20403.142065 eV Total energy + Delta-G solvation = -3240.773836 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.184 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -41.91123 -39.92561 -38.06353 -35.76761 -33.51139 -33.03310 -32.29133 -31.10495 -29.74148 -26.81041 -26.62060 -25.55093 -24.37087 -22.56443 -22.20678 -20.80262 -19.65299 -19.41422 -18.43520 -17.56479 -16.75368 -16.59335 -16.42975 -15.77217 -15.68847 -15.52066 -14.85759 -14.83874 -14.43529 -14.16162 -13.87405 -13.82927 -13.59146 -13.13211 -13.02698 -12.93114 -12.83041 -12.54139 -12.51392 -12.43861 -12.25751 -12.12603 -12.09450 -12.06368 -11.77010 -11.61261 -11.45912 -10.93735 -10.90379 -9.73781 -9.28555 -8.99412 -7.91415 -5.19883 1.46888 1.50394 1.52225 1.58201 1.95295 2.58371 2.97966 3.32193 3.42355 3.60489 3.70509 3.76714 3.87242 3.97932 4.13708 4.22728 4.24924 4.30365 4.36399 4.38659 4.51681 4.54765 4.59608 4.70274 4.77463 4.80881 4.86504 4.92420 4.95401 5.00285 5.04172 5.06185 5.20256 5.26121 5.31322 5.37726 5.43185 5.57115 5.77649 5.88117 6.29555 6.55245 7.09226 7.36972 8.10707 8.34382 9.31764 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.030974 B = 0.004225 C = 0.004117 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 903.761882 B = 6624.980457 C = 6799.752183 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C 0.131 3.869 3 H 0.081 0.919 4 C 0.162 3.838 5 H 0.072 0.928 6 N -0.725 5.725 7 C -0.237 4.237 8 H 0.081 0.919 9 C -0.072 4.072 10 N -0.970 5.970 11 Si 0.970 3.030 12 H -0.280 1.280 13 H -0.302 1.302 14 H -0.276 1.276 15 C -0.145 4.145 16 C 0.108 3.892 17 N -0.605 5.605 18 C 0.514 3.486 19 O -0.575 6.575 20 C 0.052 3.948 21 H 0.112 0.888 22 C -0.124 4.124 23 C -0.116 4.116 24 C 0.033 3.967 25 N -0.517 5.517 26 C 0.017 3.983 27 H 0.058 0.942 28 H 0.049 0.951 29 H 0.038 0.962 30 H 0.376 0.624 31 H 0.249 0.751 32 H 0.094 0.906 33 H 0.075 0.925 34 H 0.105 0.895 35 H 0.050 0.950 36 H 0.060 0.940 37 H 0.105 0.895 38 H 0.093 0.907 39 H 0.095 0.905 40 H 0.098 0.902 41 H 0.042 0.958 42 H 0.048 0.952 43 H 0.074 0.926 44 H 0.037 0.963 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.564 5.012 -15.596 20.052 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C 0.027 3.973 3 H 0.099 0.901 4 C 0.052 3.948 5 H 0.090 0.910 6 N -0.366 5.366 7 C -0.369 4.369 8 H 0.099 0.901 9 C -0.264 4.264 10 N -0.621 5.621 11 Si 0.799 3.201 12 H -0.206 1.206 13 H -0.228 1.228 14 H -0.202 1.202 15 C -0.186 4.186 16 C -0.014 4.014 17 N -0.338 5.338 18 C 0.304 3.696 19 O -0.456 6.456 20 C -0.059 4.059 21 H 0.130 0.870 22 C -0.163 4.163 23 C -0.153 4.153 24 C -0.095 4.095 25 N -0.241 5.241 26 C -0.131 4.131 27 H 0.077 0.923 28 H 0.068 0.932 29 H 0.057 0.943 30 H 0.210 0.790 31 H 0.058 0.942 32 H 0.112 0.888 33 H 0.094 0.906 34 H 0.123 0.877 35 H 0.068 0.932 36 H 0.079 0.921 37 H 0.123 0.877 38 H 0.112 0.888 39 H 0.114 0.886 40 H 0.116 0.884 41 H 0.060 0.940 42 H 0.066 0.934 43 H 0.093 0.907 44 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges 11.201 4.980 -15.649 19.879 hybrid contribution -1.057 0.215 1.234 1.639 sum 10.144 5.195 -14.415 18.377 Atomic orbital electron populations 1.21726 0.95808 1.00776 1.00893 1.21914 0.94005 0.96128 0.85231 0.90097 1.21421 0.89382 0.91349 0.92647 0.90973 1.42684 1.31970 1.52411 1.09575 1.19601 1.09148 1.19671 0.88454 0.90113 1.25485 0.98083 1.01218 1.01633 1.69820 1.18335 1.37418 1.36528 0.85265 0.76707 0.77573 0.80506 1.20635 1.22839 1.20225 1.23356 0.98666 1.01823 0.94721 1.22358 0.95085 0.87425 0.96549 1.48928 1.51551 1.28569 1.04726 1.21186 0.80197 0.85194 0.83055 1.90618 1.41704 1.29882 1.83349 1.22807 0.93952 0.98205 0.90971 0.87015 1.22802 0.98713 0.98956 0.95798 1.22749 0.94192 1.03318 0.95089 1.23288 0.97048 0.98375 0.90739 1.64115 1.01384 1.55966 1.02680 1.22746 0.91459 0.99561 0.99357 0.92331 0.93226 0.94268 0.78980 0.94246 0.88782 0.90626 0.87707 0.93183 0.92144 0.87694 0.88815 0.88645 0.88378 0.93988 0.93398 0.90702 0.94414 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.27 8.48 71.98 0.61 -4.66 16 2 C 0.13 4.57 3.45 45.25 0.16 4.72 16 3 H 0.08 2.66 8.14 -2.38 -0.02 2.64 16 4 C 0.16 5.95 3.46 46.18 0.16 6.11 16 5 H 0.07 2.59 8.11 -2.39 -0.02 2.57 16 6 N -0.72 -34.45 4.61 -317.35 -1.46 -35.92 16 7 C -0.24 -12.45 9.97 84.04 0.84 -11.62 16 8 H 0.08 4.00 7.83 -2.91 -0.02 3.98 16 9 C -0.07 -4.00 5.50 84.86 0.47 -3.53 16 10 N -0.97 -58.53 13.06 21.65 0.28 -58.25 16 11 Si 0.97 45.04 29.55 68.60 2.03 47.07 16 12 H -0.28 -12.59 7.11 99.48 0.71 -11.88 16 13 H -0.30 -14.40 7.11 99.48 0.71 -13.69 16 14 H -0.28 -12.25 7.11 99.48 0.71 -11.54 16 15 C -0.14 -4.30 6.77 31.99 0.22 -4.08 16 16 C 0.11 3.04 6.30 86.85 0.55 3.58 16 17 N -0.60 -19.05 3.08 -786.95 -2.42 -21.48 16 18 C 0.51 16.16 4.75 87.66 0.42 16.58 16 19 O -0.58 -21.35 12.84 -3.05 -0.04 -21.38 16 20 C 0.05 1.27 3.57 44.51 0.16 1.43 16 21 H 0.11 2.52 6.26 -2.39 -0.01 2.51 16 22 C -0.12 -2.30 6.48 31.86 0.21 -2.09 16 23 C -0.12 -1.69 7.08 32.07 0.23 -1.46 16 24 C 0.03 0.64 6.73 86.77 0.58 1.22 16 25 N -0.52 -13.30 5.44 -890.92 -4.85 -18.15 16 26 C 0.02 0.51 8.18 127.69 1.04 1.56 16 27 H 0.06 2.35 8.14 -2.39 -0.02 2.33 16 28 H 0.05 1.95 6.93 -2.39 -0.02 1.94 16 29 H 0.04 1.74 6.21 -2.38 -0.01 1.73 16 30 H 0.38 19.76 5.58 -92.71 -0.52 19.25 16 31 H 0.25 14.75 8.31 -92.71 -0.77 13.98 16 32 H 0.09 2.22 8.14 -2.39 -0.02 2.20 16 33 H 0.08 2.49 8.14 -2.39 -0.02 2.47 16 34 H 0.10 2.15 7.08 -2.39 -0.02 2.13 16 35 H 0.05 1.66 8.14 -2.39 -0.02 1.64 16 36 H 0.06 1.33 7.71 -2.38 -0.02 1.32 16 37 H 0.10 1.43 8.14 -2.39 -0.02 1.41 16 38 H 0.09 1.12 8.14 -2.39 -0.02 1.10 16 39 H 0.10 1.07 8.14 -2.39 -0.02 1.05 16 40 H 0.10 1.61 8.14 -2.39 -0.02 1.59 16 41 H 0.04 0.90 7.63 -2.38 -0.02 0.88 16 42 H 0.05 1.58 5.80 -2.39 -0.01 1.57 16 43 H 0.07 1.97 8.14 -2.39 -0.02 1.95 16 44 H 0.04 1.32 6.95 -2.39 -0.02 1.30 16 Total: -1.00 -65.56 336.44 -0.37 -65.93 By element: Atomic # 1 Polarization: 33.94 SS G_CDS: 0.47 Total: 34.41 kcal Atomic # 6 Polarization: 2.13 SS G_CDS: 5.63 Total: 7.76 kcal Atomic # 7 Polarization: -125.33 SS G_CDS: -8.45 Total: -133.78 kcal Atomic # 8 Polarization: -21.35 SS G_CDS: -0.04 Total: -21.38 kcal Atomic # 14 Polarization: 45.04 SS G_CDS: 2.03 Total: 47.07 kcal Total: -65.56 -0.37 -65.93 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001074561839.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.895 kcal (2) G-P(sol) polarization free energy of solvation -65.560 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.665 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.367 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.927 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.032 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds