Wall clock time and date at job start Tue Mar 31 2020 05:48:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09000 * 109.87392 * 2 1 4 4 C 1.54329 * 109.88152 * 121.01273 * 2 1 3 5 5 H 1.09008 * 110.71634 * 215.91996 * 4 2 1 6 6 N 1.46499 * 110.72165 * 339.01711 * 4 2 1 7 7 C 1.36939 * 119.99933 * 205.27544 * 6 4 2 8 8 H 1.08001 * 119.99700 * 359.72658 * 7 6 4 9 9 C 1.38810 * 120.00095 * 179.71972 * 7 6 4 10 10 N 1.31624 * 119.99740 * 0.02562 * 9 7 6 11 11 Si 1.86796 * 120.00044 * 179.97438 * 9 7 6 12 12 H 1.48501 * 109.47173 * 60.00435 * 11 9 7 13 13 H 1.48497 * 109.47172 * 180.02562 * 11 9 7 14 14 H 1.48506 * 109.47132 * 300.00314 * 11 9 7 15 15 C 1.55161 * 102.93943 * 97.38228 * 4 2 1 16 16 C 1.54910 * 101.58284 * 35.50153 * 15 4 2 17 17 N 1.47018 * 110.01112 * 238.90014 * 2 1 3 18 18 C 1.34769 * 125.65044 * 59.41522 * 17 2 1 19 19 O 1.21286 * 120.00050 * 0.02562 * 18 17 2 20 20 C 1.50697 * 120.00260 * 179.97438 * 18 17 2 21 21 H 1.09001 * 110.28901 * 57.87447 * 20 18 17 22 22 C 1.54265 * 110.32628 * 179.97438 * 20 18 17 23 23 C 1.54383 * 105.05907 * 118.89550 * 22 20 18 24 24 N 1.48563 * 104.59299 * 23.85890 * 23 22 20 25 25 C 1.46901 * 110.99829 * 200.95806 * 24 23 22 26 26 C 1.48560 * 104.22001 * 320.51347 * 24 23 22 27 27 H 1.09005 * 109.47208 * 298.98323 * 1 2 3 28 28 H 1.09001 * 109.47184 * 58.98388 * 1 2 3 29 29 H 1.08999 * 109.47114 * 178.98980 * 1 2 3 30 30 H 0.97001 * 119.99790 * 24.99517 * 6 4 2 31 31 H 0.96998 * 119.99409 * 179.97438 * 10 9 7 32 32 H 1.08994 * 110.99988 * 153.57616 * 15 4 2 33 33 H 1.09004 * 111.00127 * 277.42597 * 15 4 2 34 34 H 1.08998 * 110.36539 * 204.15498 * 16 15 4 35 35 H 1.08998 * 110.45841 * 81.87633 * 16 15 4 36 36 H 1.08993 * 110.32511 * 237.79434 * 22 20 18 37 37 H 1.09000 * 110.32260 * 359.90134 * 22 20 18 38 38 H 1.09002 * 110.41092 * 142.63524 * 23 22 20 39 39 H 1.09000 * 110.41458 * 264.95955 * 23 22 20 40 40 H 1.09004 * 109.46979 * 60.12598 * 25 24 23 41 41 H 1.09005 * 109.47194 * 180.12016 * 25 24 23 42 42 H 1.08992 * 109.47210 * 300.12885 * 25 24 23 43 43 H 1.09006 * 110.41591 * 280.70395 * 26 24 23 44 44 H 1.09008 * 110.41297 * 158.26635 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9005 1.0251 0.0000 4 6 2.0548 -0.7478 1.2438 5 1 2.9625 -0.2773 1.6222 6 7 1.0280 -0.8026 2.2873 7 6 1.3929 -0.9316 3.6009 8 1 2.4375 -0.9973 3.8672 9 6 0.4202 -0.9776 4.5901 10 7 -0.8529 -0.8978 4.2655 11 14 0.9179 -1.1543 6.3819 12 1 1.7737 -0.0056 6.7735 13 1 -0.2984 -1.1790 7.2334 14 1 1.6742 -2.4195 6.5631 15 6 2.3557 -2.1673 0.6946 16 6 2.8618 -1.8472 -0.7341 17 7 2.0331 -0.7135 -1.1829 18 6 1.7783 -0.3860 -2.4651 19 8 1.0793 0.5721 -2.7189 20 6 2.3629 -1.2095 -3.5836 21 1 2.0498 -2.2495 -3.4908 22 6 1.9304 -0.6403 -4.9506 23 6 3.2460 -0.2425 -5.6538 24 7 4.2844 -1.0889 -5.0117 25 6 5.6221 -0.5098 -5.1937 26 6 3.9033 -1.1079 -3.5759 27 1 -0.3634 0.4980 0.8990 28 1 -0.3633 0.5295 -0.8807 29 1 -0.3633 -1.0275 -0.0181 30 1 0.0898 -0.7434 2.0481 31 1 -1.5325 -0.9304 4.9567 32 1 3.1311 -2.6576 1.2831 33 1 1.4503 -2.7735 0.6617 34 1 2.7165 -2.7061 -1.3893 35 1 3.9137 -1.5624 -0.7107 36 1 1.4070 -1.4014 -5.5292 37 1 1.2939 0.2337 -4.8126 38 1 3.1868 -0.4574 -6.7208 39 1 3.4598 0.8138 -5.4909 40 1 5.6533 0.4816 -4.7417 41 1 6.3635 -1.1503 -4.7159 42 1 5.8421 -0.4309 -6.2582 43 1 4.2210 -0.1874 -3.0860 44 1 4.3390 -1.9743 -3.0783 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001075106126.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:48:19 Heat of formation + Delta-G solvation = -7.402894 kcal Electronic energy + Delta-G solvation = -23068.391792 eV Core-core repulsion = 19828.122231 eV Total energy + Delta-G solvation = -3240.269561 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.184 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.48540 -38.69722 -37.22648 -34.22924 -32.58694 -31.58602 -30.69997 -29.56882 -28.42258 -26.07930 -25.22344 -23.73618 -22.96348 -21.45891 -21.35094 -19.36721 -18.57359 -17.60273 -17.16973 -16.22721 -15.69454 -15.50204 -14.85919 -14.72713 -14.45861 -13.89929 -13.78431 -13.47335 -13.24492 -13.11195 -12.79886 -12.46374 -12.09372 -11.94386 -11.84817 -11.63647 -11.54771 -11.50988 -11.32251 -11.20188 -10.97613 -10.85764 -10.80649 -10.46599 -10.24519 -10.03192 -9.75305 -9.50311 -8.96736 -8.80536 -8.40939 -7.05076 -5.83665 -3.13704 2.74623 3.10918 3.40195 3.44984 3.46007 3.79910 4.37158 4.42746 4.53502 4.61385 4.94176 5.01359 5.05427 5.10722 5.17431 5.25589 5.30228 5.39019 5.41906 5.53184 5.57010 5.57530 5.60204 5.65537 5.72479 5.82532 5.91818 5.97024 6.05952 6.10271 6.21959 6.31138 6.50283 6.54482 6.55481 6.67507 6.70647 6.83272 6.97008 7.63473 7.76599 8.32533 8.35417 9.46321 10.01240 10.36229 11.38673 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.037783 B = 0.003633 C = 0.003427 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 740.896139 B = 7706.245862 C = 8168.767245 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.126 3.874 3 H 0.069 0.931 4 C 0.174 3.826 5 H 0.065 0.935 6 N -0.716 5.716 7 C -0.247 4.247 8 H 0.071 0.929 9 C -0.010 4.010 10 N -0.931 5.931 11 Si 0.909 3.091 12 H -0.285 1.285 13 H -0.291 1.291 14 H -0.285 1.285 15 C -0.154 4.154 16 C 0.097 3.903 17 N -0.606 5.606 18 C 0.532 3.468 19 O -0.542 6.542 20 C -0.110 4.110 21 H 0.104 0.896 22 C -0.117 4.117 23 C 0.032 3.968 24 N -0.515 5.515 25 C 0.012 3.988 26 C 0.045 3.955 27 H 0.080 0.920 28 H 0.059 0.941 29 H 0.055 0.945 30 H 0.391 0.609 31 H 0.257 0.743 32 H 0.076 0.924 33 H 0.075 0.925 34 H 0.069 0.931 35 H 0.065 0.935 36 H 0.075 0.925 37 H 0.095 0.905 38 H 0.082 0.918 39 H 0.046 0.954 40 H 0.029 0.971 41 H 0.070 0.930 42 H 0.069 0.931 43 H 0.049 0.951 44 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.386 -1.638 -17.844 20.712 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.022 3.978 3 H 0.087 0.913 4 C 0.062 3.938 5 H 0.083 0.917 6 N -0.359 5.359 7 C -0.378 4.378 8 H 0.089 0.911 9 C -0.206 4.206 10 N -0.579 5.579 11 Si 0.740 3.260 12 H -0.212 1.212 13 H -0.217 1.217 14 H -0.212 1.212 15 C -0.196 4.196 16 C -0.026 4.026 17 N -0.339 5.339 18 C 0.319 3.681 19 O -0.419 6.419 20 C -0.132 4.132 21 H 0.122 0.878 22 C -0.155 4.155 23 C -0.096 4.096 24 N -0.239 5.239 25 C -0.136 4.136 26 C -0.083 4.083 27 H 0.098 0.902 28 H 0.078 0.922 29 H 0.074 0.926 30 H 0.229 0.771 31 H 0.067 0.933 32 H 0.094 0.906 33 H 0.093 0.907 34 H 0.087 0.913 35 H 0.083 0.917 36 H 0.094 0.906 37 H 0.113 0.887 38 H 0.101 0.899 39 H 0.064 0.936 40 H 0.048 0.952 41 H 0.089 0.911 42 H 0.088 0.912 43 H 0.067 0.933 44 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges 10.074 -1.638 -18.084 20.765 hybrid contribution 0.054 0.566 1.345 1.460 sum 10.129 -1.072 -16.739 19.594 Atomic orbital electron populations 1.21994 0.94553 1.02317 1.02723 1.21889 0.95435 0.95755 0.84689 0.91268 1.21182 0.93203 0.92035 0.87414 0.91689 1.42655 1.04468 1.87064 1.01728 1.19211 0.92547 1.42960 0.83064 0.91098 1.24760 0.95224 1.02534 0.98109 1.69652 0.98875 1.56829 1.32504 0.86245 0.77035 0.77924 0.84808 1.21202 1.21678 1.21207 1.23560 1.01690 1.01335 0.92970 1.22415 0.94415 0.88504 0.97252 1.48584 1.49864 1.30536 1.04966 1.20037 0.80677 0.84951 0.82412 1.90649 1.39074 1.29248 1.82977 1.21992 0.95881 1.00997 0.94326 0.87773 1.22339 0.97381 1.02625 0.93159 1.23158 0.91416 0.95489 0.99563 1.65418 1.02201 1.47049 1.09235 1.22518 0.91043 0.97886 1.02195 1.23085 0.93259 1.01832 0.90166 0.90154 0.92233 0.92634 0.77108 0.93294 0.90557 0.90675 0.91268 0.91712 0.90580 0.88654 0.89913 0.93614 0.95230 0.91089 0.91177 0.93274 0.89206 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.99 7.94 37.16 0.29 -2.70 16 2 C 0.13 2.23 3.47 -66.95 -0.23 2.00 16 3 H 0.07 1.26 8.14 -51.93 -0.42 0.84 16 4 C 0.17 3.29 3.49 -66.09 -0.23 3.06 16 5 H 0.07 1.23 8.09 -51.92 -0.42 0.81 16 6 N -0.72 -17.17 4.93 -51.64 -0.25 -17.43 16 7 C -0.25 -6.58 9.96 -15.06 -0.15 -6.73 16 8 H 0.07 1.81 7.83 -52.49 -0.41 1.40 16 9 C -0.01 -0.27 5.50 -17.43 -0.10 -0.37 16 10 N -0.93 -27.45 13.06 55.49 0.72 -26.72 16 11 Si 0.91 21.80 29.55 -169.99 -5.02 16.78 16 12 H -0.29 -6.75 7.11 56.52 0.40 -6.35 16 13 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 14 H -0.29 -6.72 7.11 56.52 0.40 -6.32 16 15 C -0.15 -2.45 6.77 -24.58 -0.17 -2.62 16 16 C 0.10 1.23 5.63 -2.53 -0.01 1.22 16 17 N -0.61 -9.16 3.08 -163.02 -0.50 -9.66 16 18 C 0.53 8.06 6.85 -10.99 -0.08 7.99 16 19 O -0.54 -9.99 14.16 5.55 0.08 -9.91 16 20 C -0.11 -1.27 2.73 -90.39 -0.25 -1.52 16 21 H 0.10 1.09 7.78 -51.93 -0.40 0.69 16 22 C -0.12 -1.27 6.59 -25.34 -0.17 -1.44 16 23 C 0.03 0.31 6.49 -2.18 -0.01 0.29 16 24 N -0.52 -5.12 5.66 -238.22 -1.35 -6.47 16 25 C 0.01 0.10 9.53 60.07 0.57 0.67 16 26 C 0.04 0.46 5.15 -2.18 -0.01 0.45 16 27 H 0.08 1.67 6.77 -51.93 -0.35 1.31 16 28 H 0.06 1.13 6.77 -51.93 -0.35 0.78 16 29 H 0.05 1.07 8.03 -51.93 -0.42 0.65 16 30 H 0.39 9.95 5.06 -40.82 -0.21 9.75 16 31 H 0.26 7.38 8.31 -40.82 -0.34 7.04 16 32 H 0.08 1.15 8.14 -51.93 -0.42 0.73 16 33 H 0.07 1.32 8.14 -51.93 -0.42 0.89 16 34 H 0.07 0.74 7.43 -51.93 -0.39 0.35 16 35 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 36 H 0.08 0.73 8.14 -51.93 -0.42 0.31 16 37 H 0.10 1.22 6.46 -51.93 -0.34 0.89 16 38 H 0.08 0.69 8.14 -51.93 -0.42 0.27 16 39 H 0.05 0.46 7.98 -51.93 -0.41 0.05 16 40 H 0.03 0.25 7.97 -51.93 -0.41 -0.17 16 41 H 0.07 0.52 8.14 -51.93 -0.42 0.09 16 42 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 43 H 0.05 0.56 7.61 -51.93 -0.40 0.16 16 44 H 0.09 0.82 7.83 -51.92 -0.41 0.41 16 LS Contribution 340.89 15.07 5.14 5.14 Total: -1.00 -30.53 340.89 -9.15 -39.68 By element: Atomic # 1 Polarization: 15.70 SS G_CDS: -7.43 Total: 8.28 kcal Atomic # 6 Polarization: 0.85 SS G_CDS: -0.54 Total: 0.31 kcal Atomic # 7 Polarization: -58.89 SS G_CDS: -1.38 Total: -60.28 kcal Atomic # 8 Polarization: -9.99 SS G_CDS: 0.08 Total: -9.91 kcal Atomic # 14 Polarization: 21.80 SS G_CDS: -5.02 Total: 16.78 kcal Total LS contribution 5.14 Total: 5.14 kcal Total: -30.53 -9.15 -39.68 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001075106126.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.279 kcal (2) G-P(sol) polarization free energy of solvation -30.527 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.752 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.155 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.682 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.403 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds