Wall clock time and date at job start Tue Mar 31 2020 05:48:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09000 * 109.87392 * 2 1 4 4 C 1.54329 * 109.88152 * 121.01273 * 2 1 3 5 5 H 1.09008 * 110.71634 * 215.91996 * 4 2 1 6 6 N 1.46499 * 110.72165 * 339.01711 * 4 2 1 7 7 C 1.36939 * 119.99933 * 205.27544 * 6 4 2 8 8 H 1.08001 * 119.99700 * 359.72658 * 7 6 4 9 9 C 1.38810 * 120.00095 * 179.71972 * 7 6 4 10 10 N 1.31624 * 119.99740 * 0.02562 * 9 7 6 11 11 Si 1.86796 * 120.00044 * 179.97438 * 9 7 6 12 12 H 1.48501 * 109.47173 * 60.00435 * 11 9 7 13 13 H 1.48497 * 109.47172 * 180.02562 * 11 9 7 14 14 H 1.48506 * 109.47132 * 300.00314 * 11 9 7 15 15 C 1.55161 * 102.93943 * 97.38228 * 4 2 1 16 16 C 1.54910 * 101.58284 * 35.50153 * 15 4 2 17 17 N 1.47018 * 110.01112 * 238.90014 * 2 1 3 18 18 C 1.34769 * 125.65044 * 59.41522 * 17 2 1 19 19 O 1.21286 * 120.00050 * 0.02562 * 18 17 2 20 20 C 1.50697 * 120.00260 * 179.97438 * 18 17 2 21 21 H 1.09001 * 110.28901 * 57.87447 * 20 18 17 22 22 C 1.54265 * 110.32628 * 179.97438 * 20 18 17 23 23 C 1.54383 * 105.05907 * 118.89550 * 22 20 18 24 24 N 1.48563 * 104.59299 * 23.85890 * 23 22 20 25 25 C 1.46901 * 110.99829 * 200.95806 * 24 23 22 26 26 C 1.48560 * 104.22001 * 320.51347 * 24 23 22 27 27 H 1.09005 * 109.47208 * 298.98323 * 1 2 3 28 28 H 1.09001 * 109.47184 * 58.98388 * 1 2 3 29 29 H 1.08999 * 109.47114 * 178.98980 * 1 2 3 30 30 H 0.97001 * 119.99790 * 24.99517 * 6 4 2 31 31 H 0.96998 * 119.99409 * 179.97438 * 10 9 7 32 32 H 1.08994 * 110.99988 * 153.57616 * 15 4 2 33 33 H 1.09004 * 111.00127 * 277.42597 * 15 4 2 34 34 H 1.08998 * 110.36539 * 204.15498 * 16 15 4 35 35 H 1.08998 * 110.45841 * 81.87633 * 16 15 4 36 36 H 1.08993 * 110.32511 * 237.79434 * 22 20 18 37 37 H 1.09000 * 110.32260 * 359.90134 * 22 20 18 38 38 H 1.09002 * 110.41092 * 142.63524 * 23 22 20 39 39 H 1.09000 * 110.41458 * 264.95955 * 23 22 20 40 40 H 1.09004 * 109.46979 * 60.12598 * 25 24 23 41 41 H 1.09005 * 109.47194 * 180.12016 * 25 24 23 42 42 H 1.08992 * 109.47210 * 300.12885 * 25 24 23 43 43 H 1.09006 * 110.41591 * 280.70395 * 26 24 23 44 44 H 1.09008 * 110.41297 * 158.26635 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9005 1.0251 0.0000 4 6 2.0548 -0.7478 1.2438 5 1 2.9625 -0.2773 1.6222 6 7 1.0280 -0.8026 2.2873 7 6 1.3929 -0.9316 3.6009 8 1 2.4375 -0.9973 3.8672 9 6 0.4202 -0.9776 4.5901 10 7 -0.8529 -0.8978 4.2655 11 14 0.9179 -1.1543 6.3819 12 1 1.7737 -0.0056 6.7735 13 1 -0.2984 -1.1790 7.2334 14 1 1.6742 -2.4195 6.5631 15 6 2.3557 -2.1673 0.6946 16 6 2.8618 -1.8472 -0.7341 17 7 2.0331 -0.7135 -1.1829 18 6 1.7783 -0.3860 -2.4651 19 8 1.0793 0.5721 -2.7189 20 6 2.3629 -1.2095 -3.5836 21 1 2.0498 -2.2495 -3.4908 22 6 1.9304 -0.6403 -4.9506 23 6 3.2460 -0.2425 -5.6538 24 7 4.2844 -1.0889 -5.0117 25 6 5.6221 -0.5098 -5.1937 26 6 3.9033 -1.1079 -3.5759 27 1 -0.3634 0.4980 0.8990 28 1 -0.3633 0.5295 -0.8807 29 1 -0.3633 -1.0275 -0.0181 30 1 0.0898 -0.7434 2.0481 31 1 -1.5325 -0.9304 4.9567 32 1 3.1311 -2.6576 1.2831 33 1 1.4503 -2.7735 0.6617 34 1 2.7165 -2.7061 -1.3893 35 1 3.9137 -1.5624 -0.7107 36 1 1.4070 -1.4014 -5.5292 37 1 1.2939 0.2337 -4.8126 38 1 3.1868 -0.4574 -6.7208 39 1 3.4598 0.8138 -5.4909 40 1 5.6533 0.4816 -4.7417 41 1 6.3635 -1.1503 -4.7159 42 1 5.8421 -0.4309 -6.2582 43 1 4.2210 -0.1874 -3.0860 44 1 4.3390 -1.9743 -3.0783 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001075106126.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:48:19 Heat of formation + Delta-G solvation = -28.582813 kcal Electronic energy + Delta-G solvation = -23069.310222 eV Core-core repulsion = 19828.122231 eV Total energy + Delta-G solvation = -3241.187991 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.184 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -41.64616 -39.76697 -38.45935 -35.95018 -33.76955 -33.02389 -32.07602 -30.92101 -29.61389 -26.87250 -26.76313 -25.44767 -24.27004 -22.45485 -22.20934 -20.72860 -19.79750 -19.44831 -18.37738 -17.22343 -16.88942 -16.77985 -16.29236 -16.06418 -15.52174 -15.35174 -15.05622 -14.68062 -14.52222 -14.22822 -13.84566 -13.80839 -13.55508 -13.24149 -13.04473 -12.92699 -12.83470 -12.62011 -12.57631 -12.34968 -12.31395 -12.15207 -12.10915 -12.03637 -11.71008 -11.60441 -11.53283 -10.90640 -10.80238 -9.68855 -9.54975 -9.01451 -7.93536 -5.22760 1.49737 1.52300 1.57097 1.58255 1.91029 2.58088 3.01860 3.36835 3.49682 3.56522 3.66295 3.77118 3.87525 3.96384 4.18293 4.19257 4.27040 4.36759 4.40154 4.42888 4.51128 4.54247 4.56031 4.65103 4.67072 4.78072 4.85286 4.85607 4.96711 5.02436 5.04611 5.11798 5.13174 5.20461 5.26002 5.34322 5.49997 5.54812 5.75157 5.97101 6.27884 6.57031 7.12504 7.35177 8.08824 8.32339 9.29933 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.037783 B = 0.003633 C = 0.003427 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 740.896139 B = 7706.245862 C = 8168.767245 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.132 3.868 3 H 0.060 0.940 4 C 0.166 3.834 5 H 0.069 0.931 6 N -0.732 5.732 7 C -0.241 4.241 8 H 0.082 0.918 9 C -0.075 4.075 10 N -0.971 5.971 11 Si 0.974 3.026 12 H -0.279 1.279 13 H -0.300 1.300 14 H -0.275 1.275 15 C -0.145 4.145 16 C 0.104 3.896 17 N -0.606 5.606 18 C 0.528 3.472 19 O -0.581 6.581 20 C -0.104 4.104 21 H 0.124 0.876 22 C -0.118 4.118 23 C 0.034 3.966 24 N -0.518 5.518 25 C 0.011 3.989 26 C 0.049 3.951 27 H 0.055 0.945 28 H 0.054 0.946 29 H 0.048 0.952 30 H 0.380 0.620 31 H 0.250 0.750 32 H 0.090 0.910 33 H 0.056 0.944 34 H 0.101 0.899 35 H 0.093 0.907 36 H 0.091 0.909 37 H 0.071 0.929 38 H 0.099 0.901 39 H 0.036 0.964 40 H 0.024 0.976 41 H 0.082 0.918 42 H 0.081 0.919 43 H 0.037 0.963 44 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.993 -3.142 -19.039 23.263 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C 0.028 3.972 3 H 0.078 0.922 4 C 0.056 3.944 5 H 0.087 0.913 6 N -0.374 5.374 7 C -0.373 4.373 8 H 0.100 0.900 9 C -0.267 4.267 10 N -0.622 5.622 11 Si 0.803 3.197 12 H -0.205 1.205 13 H -0.227 1.227 14 H -0.201 1.201 15 C -0.186 4.186 16 C -0.017 4.017 17 N -0.338 5.338 18 C 0.317 3.683 19 O -0.462 6.462 20 C -0.125 4.125 21 H 0.141 0.859 22 C -0.156 4.156 23 C -0.094 4.094 24 N -0.242 5.242 25 C -0.138 4.138 26 C -0.080 4.080 27 H 0.074 0.926 28 H 0.073 0.927 29 H 0.067 0.933 30 H 0.216 0.784 31 H 0.059 0.941 32 H 0.108 0.892 33 H 0.075 0.925 34 H 0.119 0.881 35 H 0.111 0.889 36 H 0.110 0.890 37 H 0.089 0.911 38 H 0.117 0.883 39 H 0.055 0.945 40 H 0.042 0.958 41 H 0.100 0.900 42 H 0.099 0.901 43 H 0.055 0.945 44 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges 12.758 -3.165 -19.315 23.364 hybrid contribution -0.722 1.079 1.622 2.078 sum 12.036 -2.085 -17.693 21.500 Atomic orbital electron populations 1.21804 0.95848 1.01322 1.01146 1.21604 0.94246 0.95654 0.85742 0.92180 1.21395 0.91998 0.94346 0.86700 0.91296 1.42832 1.05026 1.87392 1.02156 1.19644 0.92915 1.40498 0.84241 0.90023 1.25561 0.95286 1.03747 1.02139 1.69822 0.99867 1.59276 1.33207 0.85208 0.76278 0.78265 0.79964 1.20489 1.22693 1.20111 1.23365 1.01487 0.98513 0.95208 1.22573 0.95139 0.88634 0.95396 1.48612 1.50015 1.30905 1.04298 1.20757 0.79930 0.84712 0.82863 1.90639 1.40839 1.31149 1.83549 1.22033 0.96777 1.01004 0.92698 0.85852 1.22335 0.97835 1.02090 0.93342 1.23158 0.90807 0.95030 1.00388 1.65467 1.02867 1.47140 1.08751 1.22586 0.90311 0.97745 1.03109 1.23104 0.92010 1.02156 0.90704 0.92598 0.92702 0.93306 0.78422 0.94096 0.89195 0.92511 0.88100 0.88870 0.89046 0.91087 0.88314 0.94536 0.95765 0.89973 0.90066 0.94487 0.87120 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.62 7.94 71.98 0.57 -5.05 16 2 C 0.13 4.68 3.47 45.34 0.16 4.84 16 3 H 0.06 2.23 8.14 -2.39 -0.02 2.21 16 4 C 0.17 6.16 3.49 46.18 0.16 6.32 16 5 H 0.07 2.51 8.09 -2.38 -0.02 2.49 16 6 N -0.73 -35.51 4.93 -317.30 -1.57 -37.08 16 7 C -0.24 -12.85 9.96 84.03 0.84 -12.01 16 8 H 0.08 4.08 7.83 -2.91 -0.02 4.05 16 9 C -0.08 -4.21 5.50 84.86 0.47 -3.74 16 10 N -0.97 -58.83 13.06 21.65 0.28 -58.54 16 11 Si 0.97 45.09 29.55 68.60 2.03 47.12 16 12 H -0.28 -12.45 7.11 99.48 0.71 -11.74 16 13 H -0.30 -14.25 7.11 99.48 0.71 -13.54 16 14 H -0.28 -12.14 7.11 99.48 0.71 -11.43 16 15 C -0.14 -4.29 6.77 31.99 0.22 -4.07 16 16 C 0.10 2.27 5.63 86.85 0.49 2.76 16 17 N -0.61 -17.30 3.08 -788.06 -2.43 -19.73 16 18 C 0.53 15.36 6.85 87.66 0.60 15.96 16 19 O -0.58 -21.61 14.16 -3.05 -0.04 -21.66 16 20 C -0.10 -2.12 2.73 -10.65 -0.03 -2.15 16 21 H 0.12 2.10 7.78 -2.39 -0.02 2.08 16 22 C -0.12 -2.37 6.59 31.49 0.21 -2.16 16 23 C 0.03 0.59 6.49 86.45 0.56 1.15 16 24 N -0.52 -8.67 5.66 -907.60 -5.14 -13.81 16 25 C 0.01 0.15 9.53 127.69 1.22 1.36 16 26 C 0.05 0.84 5.15 86.45 0.44 1.28 16 27 H 0.06 2.45 6.77 -2.38 -0.02 2.44 16 28 H 0.05 2.17 6.77 -2.39 -0.02 2.16 16 29 H 0.05 1.94 8.03 -2.39 -0.02 1.92 16 30 H 0.38 20.01 5.06 -92.71 -0.47 19.54 16 31 H 0.25 14.82 8.31 -92.71 -0.77 14.05 16 32 H 0.09 2.44 8.14 -2.39 -0.02 2.42 16 33 H 0.06 1.91 8.14 -2.39 -0.02 1.89 16 34 H 0.10 1.65 7.43 -2.39 -0.02 1.63 16 35 H 0.09 1.59 8.14 -2.39 -0.02 1.57 16 36 H 0.09 1.54 8.14 -2.39 -0.02 1.52 16 37 H 0.07 1.81 6.46 -2.39 -0.02 1.79 16 38 H 0.10 1.39 8.14 -2.39 -0.02 1.37 16 39 H 0.04 0.70 7.98 -2.39 -0.02 0.68 16 40 H 0.02 0.35 7.97 -2.38 -0.02 0.33 16 41 H 0.08 0.92 8.14 -2.38 -0.02 0.90 16 42 H 0.08 0.90 8.14 -2.39 -0.02 0.88 16 43 H 0.04 0.74 7.61 -2.38 -0.02 0.72 16 44 H 0.11 1.47 7.83 -2.38 -0.02 1.45 16 Total: -1.00 -67.38 340.89 -0.46 -67.84 By element: Atomic # 1 Polarization: 30.88 SS G_CDS: 0.51 Total: 31.38 kcal Atomic # 6 Polarization: -1.42 SS G_CDS: 5.90 Total: 4.48 kcal Atomic # 7 Polarization: -120.31 SS G_CDS: -8.85 Total: -129.17 kcal Atomic # 8 Polarization: -21.61 SS G_CDS: -0.04 Total: -21.66 kcal Atomic # 14 Polarization: 45.09 SS G_CDS: 2.03 Total: 47.12 kcal Total: -67.38 -0.46 -67.84 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001075106126.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.259 kcal (2) G-P(sol) polarization free energy of solvation -67.382 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.122 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.461 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.842 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.583 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds