Wall clock time and date at job start Tue Mar 31 2020 05:48:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08997 * 109.87309 * 2 1 4 4 C 1.54323 * 109.88316 * 121.01994 * 2 1 3 5 5 H 1.09006 * 110.71765 * 215.92002 * 4 2 1 6 6 N 1.46504 * 110.71609 * 339.01021 * 4 2 1 7 7 C 1.36943 * 119.99781 * 205.00348 * 6 4 2 8 8 H 1.08002 * 119.99788 * 359.97438 * 7 6 4 9 9 C 1.38811 * 119.99622 * 180.27904 * 7 6 4 10 10 N 1.31614 * 120.00467 * 359.72375 * 9 7 6 11 11 Si 1.86801 * 119.99700 * 179.72266 * 9 7 6 12 12 H 1.48501 * 109.46896 * 89.99850 * 11 9 7 13 13 H 1.48499 * 109.47039 * 210.00011 * 11 9 7 14 14 H 1.48501 * 109.47275 * 329.99811 * 11 9 7 15 15 C 1.55152 * 102.94406 * 97.37589 * 4 2 1 16 16 C 1.54901 * 101.58450 * 35.50299 * 15 4 2 17 17 N 1.47026 * 110.00843 * 238.90204 * 2 1 3 18 18 C 1.34772 * 125.64938 * 59.41598 * 17 2 1 19 19 O 1.21279 * 120.00271 * 0.02562 * 18 17 2 20 20 C 1.50708 * 119.99974 * 180.02562 * 18 17 2 21 21 H 1.09000 * 110.64142 * 303.14883 * 20 18 17 22 22 C 1.54592 * 110.72127 * 180.02562 * 20 18 17 23 23 C 1.54000 * 105.13784 * 219.68508 * 22 20 18 24 24 N 1.47900 * 107.05746 * 358.77239 * 23 22 20 25 25 C 1.46900 * 111.00135 * 145.84441 * 24 23 22 26 26 C 1.48535 * 105.81749 * 25.33459 * 24 23 22 27 27 H 1.09000 * 109.46628 * 298.98730 * 1 2 3 28 28 H 1.08997 * 109.46639 * 58.98326 * 1 2 3 29 29 H 1.09000 * 109.47242 * 178.98308 * 1 2 3 30 30 H 0.97000 * 120.00410 * 25.00674 * 6 4 2 31 31 H 0.96995 * 120.00147 * 180.02562 * 10 9 7 32 32 H 1.09004 * 111.00380 * 153.57654 * 15 4 2 33 33 H 1.08999 * 111.00352 * 277.42313 * 15 4 2 34 34 H 1.09000 * 110.37103 * 204.15510 * 16 15 4 35 35 H 1.09003 * 110.36645 * 81.82601 * 16 15 4 36 36 H 1.09005 * 110.31185 * 338.59844 * 22 20 18 37 37 H 1.08999 * 110.30972 * 100.76755 * 22 20 18 38 38 H 1.08996 * 109.91697 * 118.12826 * 23 22 20 39 39 H 1.08999 * 109.91256 * 239.22945 * 23 22 20 40 40 H 1.09001 * 109.46889 * 60.12542 * 25 24 23 41 41 H 1.08995 * 109.47534 * 180.12904 * 25 24 23 42 42 H 1.09006 * 109.46852 * 300.13021 * 25 24 23 43 43 H 1.09003 * 110.66447 * 202.35562 * 26 24 23 44 44 H 1.08996 * 110.67073 * 79.23036 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9006 1.0251 0.0000 4 6 2.0549 -0.7479 1.2437 5 1 2.9625 -0.2774 1.6220 6 7 1.0280 -0.8026 2.2872 7 6 1.3927 -0.9373 3.6003 8 1 2.4373 -1.0036 3.8665 9 6 0.4195 -0.9950 4.5884 10 7 -0.8534 -0.9148 4.2639 11 14 0.9167 -1.1866 6.3788 12 1 1.1021 0.1553 6.9873 13 1 -0.1462 -1.9200 7.1119 14 1 2.1895 -1.9473 6.4605 15 6 2.3556 -2.1674 0.6944 16 6 2.8617 -1.8474 -0.7342 17 7 2.0331 -0.7136 -1.1830 18 6 1.7783 -0.3859 -2.4652 19 8 1.0793 0.5722 -2.7189 20 6 2.3619 -1.2102 -3.5838 21 1 3.4482 -1.2513 -3.5044 22 6 1.9353 -0.6465 -4.9586 23 6 1.6491 -1.8841 -5.8294 24 7 1.9304 -3.0742 -4.9976 25 6 1.0132 -4.1741 -5.3250 26 6 1.7538 -2.6352 -3.5897 27 1 -0.3632 0.4980 0.8990 28 1 -0.3632 0.5295 -0.8807 29 1 -0.3634 -1.0275 -0.0182 30 1 0.0898 -0.7435 2.0481 31 1 -1.5334 -0.9547 4.9545 32 1 3.1311 -2.6578 1.2829 33 1 1.4503 -2.7735 0.6616 34 1 2.7164 -2.7062 -1.3895 35 1 3.9135 -1.5620 -0.7090 36 1 1.0355 -0.0398 -4.8562 37 1 2.7427 -0.0569 -5.3929 38 1 0.6041 -1.8863 -6.1395 39 1 2.2965 -1.8788 -6.7062 40 1 1.1325 -4.4466 -6.3737 41 1 1.2405 -5.0358 -4.6975 42 1 -0.0140 -3.8557 -5.1470 43 1 2.3009 -3.2897 -2.9111 44 1 0.6966 -2.6035 -3.3263 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001075106127.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:48:21 Heat of formation + Delta-G solvation = -5.635052 kcal Electronic energy + Delta-G solvation = -23119.963119 eV Core-core repulsion = 19879.770218 eV Total energy + Delta-G solvation = -3240.192902 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.184 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.45566 -38.70195 -37.25280 -34.22341 -32.56934 -31.57955 -30.70642 -29.57347 -28.48857 -26.04406 -25.21946 -23.72803 -22.97617 -21.60153 -21.19525 -19.37889 -18.55675 -17.64444 -17.19541 -16.15245 -15.65733 -15.59104 -14.74799 -14.68298 -14.27952 -14.15428 -13.70780 -13.60152 -13.31219 -13.06251 -12.77817 -12.50654 -12.09260 -11.93510 -11.81753 -11.66080 -11.64519 -11.53730 -11.23562 -11.13171 -10.99556 -10.84100 -10.80319 -10.46113 -10.22262 -10.01209 -9.75169 -9.50106 -8.96957 -8.73008 -8.38990 -7.04833 -5.83771 -3.13663 2.73994 3.10917 3.39920 3.45296 3.46856 3.80464 4.33936 4.41862 4.53617 4.66140 4.92783 5.00455 5.05144 5.11351 5.19940 5.24223 5.26384 5.36218 5.45016 5.55210 5.55744 5.61116 5.61694 5.68377 5.72764 5.85015 5.89191 5.98744 6.06305 6.10751 6.21818 6.31754 6.53700 6.54900 6.57012 6.69719 6.71153 6.83170 6.96973 7.64277 7.77427 8.33001 8.35545 9.46368 10.01318 10.36259 11.38672 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.032402 B = 0.003722 C = 0.003607 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 863.939821 B = 7522.016490 C = 7760.831649 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.126 3.874 3 H 0.070 0.930 4 C 0.174 3.826 5 H 0.066 0.934 6 N -0.717 5.717 7 C -0.246 4.246 8 H 0.072 0.928 9 C -0.010 4.010 10 N -0.931 5.931 11 Si 0.908 3.092 12 H -0.289 1.289 13 H -0.291 1.291 14 H -0.281 1.281 15 C -0.154 4.154 16 C 0.092 3.908 17 N -0.606 5.606 18 C 0.533 3.467 19 O -0.542 6.542 20 C -0.109 4.109 21 H 0.106 0.894 22 C -0.118 4.118 23 C 0.035 3.965 24 N -0.521 5.521 25 C 0.014 3.986 26 C 0.045 3.955 27 H 0.080 0.920 28 H 0.058 0.942 29 H 0.054 0.946 30 H 0.391 0.609 31 H 0.257 0.743 32 H 0.076 0.924 33 H 0.074 0.926 34 H 0.072 0.928 35 H 0.066 0.934 36 H 0.088 0.912 37 H 0.076 0.924 38 H 0.046 0.954 39 H 0.080 0.920 40 H 0.069 0.931 41 H 0.071 0.929 42 H 0.029 0.971 43 H 0.093 0.907 44 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.934 -4.445 -18.149 19.930 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.022 3.978 3 H 0.088 0.912 4 C 0.062 3.938 5 H 0.084 0.916 6 N -0.359 5.359 7 C -0.377 4.377 8 H 0.090 0.910 9 C -0.206 4.206 10 N -0.579 5.579 11 Si 0.739 3.261 12 H -0.217 1.217 13 H -0.218 1.218 14 H -0.207 1.207 15 C -0.195 4.195 16 C -0.031 4.031 17 N -0.340 5.340 18 C 0.321 3.679 19 O -0.420 6.420 20 C -0.131 4.131 21 H 0.124 0.876 22 C -0.157 4.157 23 C -0.093 4.093 24 N -0.245 5.245 25 C -0.134 4.134 26 C -0.083 4.083 27 H 0.099 0.901 28 H 0.077 0.923 29 H 0.073 0.927 30 H 0.229 0.771 31 H 0.066 0.934 32 H 0.095 0.905 33 H 0.092 0.908 34 H 0.090 0.910 35 H 0.084 0.916 36 H 0.107 0.893 37 H 0.094 0.906 38 H 0.065 0.935 39 H 0.099 0.901 40 H 0.088 0.912 41 H 0.090 0.910 42 H 0.048 0.952 43 H 0.111 0.889 44 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 7.109 -4.127 -18.262 20.026 hybrid contribution -0.851 0.012 1.106 1.396 sum 6.258 -4.115 -17.155 18.719 Atomic orbital electron populations 1.21991 0.94628 1.02226 1.02706 1.21886 0.95354 0.95832 0.84679 0.91165 1.21186 0.93216 0.92036 0.87407 0.91626 1.42664 1.04470 1.87031 1.01776 1.19259 0.92568 1.42715 0.83121 0.91031 1.24753 0.95209 1.02568 0.98109 1.69655 0.98871 1.56950 1.32406 0.86176 0.77252 0.77613 0.85030 1.21653 1.21769 1.20700 1.23550 1.01636 1.01328 0.92999 1.22535 0.94562 0.88701 0.97309 1.48588 1.49879 1.30529 1.04954 1.19974 0.80686 0.84909 0.82331 1.90661 1.38910 1.29302 1.83119 1.22164 1.02013 0.94912 0.93990 0.87556 1.22365 1.03401 0.97292 0.92599 1.22918 0.99969 0.89379 0.97063 1.64773 1.49898 1.06812 1.03032 1.22533 0.93980 0.94850 1.02061 1.23283 0.99908 0.94186 0.90951 0.90142 0.92288 0.92725 0.77140 0.93362 0.90549 0.90761 0.90957 0.91586 0.89304 0.90559 0.93541 0.90127 0.91202 0.91046 0.95192 0.88889 0.92993 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.98 7.94 37.16 0.29 -2.69 16 2 C 0.13 2.24 3.47 -66.95 -0.23 2.00 16 3 H 0.07 1.28 8.14 -51.93 -0.42 0.86 16 4 C 0.17 3.29 3.49 -66.10 -0.23 3.06 16 5 H 0.07 1.24 8.09 -51.93 -0.42 0.82 16 6 N -0.72 -17.16 4.93 -51.65 -0.25 -17.41 16 7 C -0.25 -6.54 9.96 -15.06 -0.15 -6.69 16 8 H 0.07 1.83 7.83 -52.49 -0.41 1.42 16 9 C -0.01 -0.28 5.50 -17.43 -0.10 -0.37 16 10 N -0.93 -27.42 13.06 55.49 0.72 -26.70 16 11 Si 0.91 21.80 29.55 -169.99 -5.02 16.77 16 12 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 13 H -0.29 -7.09 7.11 56.52 0.40 -6.68 16 14 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 15 C -0.15 -2.44 6.77 -24.59 -0.17 -2.61 16 16 C 0.09 1.17 6.63 -2.53 -0.02 1.16 16 17 N -0.61 -9.18 3.08 -163.01 -0.50 -9.68 16 18 C 0.53 8.11 6.97 -10.98 -0.08 8.03 16 19 O -0.54 -10.04 14.35 5.56 0.08 -9.96 16 20 C -0.11 -1.26 2.82 -89.91 -0.25 -1.51 16 21 H 0.11 1.10 8.14 -51.93 -0.42 0.67 16 22 C -0.12 -1.28 6.33 -25.37 -0.16 -1.44 16 23 C 0.03 0.33 6.70 -2.75 -0.02 0.31 16 24 N -0.52 -5.27 5.55 -238.71 -1.33 -6.59 16 25 C 0.01 0.12 9.40 60.06 0.56 0.69 16 26 C 0.04 0.48 5.31 -1.90 -0.01 0.47 16 27 H 0.08 1.67 6.77 -51.93 -0.35 1.31 16 28 H 0.06 1.12 6.77 -51.93 -0.35 0.77 16 29 H 0.05 1.05 8.03 -51.93 -0.42 0.63 16 30 H 0.39 9.93 5.06 -40.82 -0.21 9.73 16 31 H 0.26 7.34 8.31 -40.82 -0.34 7.00 16 32 H 0.08 1.16 8.14 -51.93 -0.42 0.73 16 33 H 0.07 1.29 8.14 -51.93 -0.42 0.87 16 34 H 0.07 0.78 5.03 -51.93 -0.26 0.52 16 35 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 36 H 0.09 1.13 6.85 -51.93 -0.36 0.78 16 37 H 0.08 0.73 8.14 -51.93 -0.42 0.31 16 38 H 0.05 0.43 7.73 -51.93 -0.40 0.03 16 39 H 0.08 0.67 8.14 -51.93 -0.42 0.24 16 40 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 41 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 42 H 0.03 0.26 8.00 -51.93 -0.42 -0.15 16 43 H 0.09 0.93 6.01 -51.93 -0.31 0.61 16 44 H 0.05 0.63 7.87 -51.93 -0.41 0.23 16 LS Contribution 338.76 15.07 5.11 5.11 Total: -1.00 -30.50 338.76 -9.00 -39.50 By element: Atomic # 1 Polarization: 15.81 SS G_CDS: -7.25 Total: 8.56 kcal Atomic # 6 Polarization: 0.96 SS G_CDS: -0.55 Total: 0.41 kcal Atomic # 7 Polarization: -59.03 SS G_CDS: -1.36 Total: -60.39 kcal Atomic # 8 Polarization: -10.04 SS G_CDS: 0.08 Total: -9.96 kcal Atomic # 14 Polarization: 21.80 SS G_CDS: -5.02 Total: 16.77 kcal Total LS contribution 5.11 Total: 5.11 kcal Total: -30.50 -9.00 -39.50 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001075106127.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.865 kcal (2) G-P(sol) polarization free energy of solvation -30.498 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.366 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.001 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.500 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.635 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds