Wall clock time and date at job start Tue Mar 31 2020 05:48:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08997 * 109.87309 * 2 1 4 4 C 1.54323 * 109.88316 * 121.01994 * 2 1 3 5 5 H 1.09006 * 110.71765 * 215.92002 * 4 2 1 6 6 N 1.46504 * 110.71609 * 339.01021 * 4 2 1 7 7 C 1.36943 * 119.99781 * 205.00348 * 6 4 2 8 8 H 1.08002 * 119.99788 * 359.97438 * 7 6 4 9 9 C 1.38811 * 119.99622 * 180.27904 * 7 6 4 10 10 N 1.31614 * 120.00467 * 359.72375 * 9 7 6 11 11 Si 1.86801 * 119.99700 * 179.72266 * 9 7 6 12 12 H 1.48501 * 109.46896 * 89.99850 * 11 9 7 13 13 H 1.48499 * 109.47039 * 210.00011 * 11 9 7 14 14 H 1.48501 * 109.47275 * 329.99811 * 11 9 7 15 15 C 1.55152 * 102.94406 * 97.37589 * 4 2 1 16 16 C 1.54901 * 101.58450 * 35.50299 * 15 4 2 17 17 N 1.47026 * 110.00843 * 238.90204 * 2 1 3 18 18 C 1.34772 * 125.64938 * 59.41598 * 17 2 1 19 19 O 1.21279 * 120.00271 * 0.02562 * 18 17 2 20 20 C 1.50708 * 119.99974 * 180.02562 * 18 17 2 21 21 H 1.09000 * 110.64142 * 303.14883 * 20 18 17 22 22 C 1.54592 * 110.72127 * 180.02562 * 20 18 17 23 23 C 1.54000 * 105.13784 * 219.68508 * 22 20 18 24 24 N 1.47900 * 107.05746 * 358.77239 * 23 22 20 25 25 C 1.46900 * 111.00135 * 145.84441 * 24 23 22 26 26 C 1.48535 * 105.81749 * 25.33459 * 24 23 22 27 27 H 1.09000 * 109.46628 * 298.98730 * 1 2 3 28 28 H 1.08997 * 109.46639 * 58.98326 * 1 2 3 29 29 H 1.09000 * 109.47242 * 178.98308 * 1 2 3 30 30 H 0.97000 * 120.00410 * 25.00674 * 6 4 2 31 31 H 0.96995 * 120.00147 * 180.02562 * 10 9 7 32 32 H 1.09004 * 111.00380 * 153.57654 * 15 4 2 33 33 H 1.08999 * 111.00352 * 277.42313 * 15 4 2 34 34 H 1.09000 * 110.37103 * 204.15510 * 16 15 4 35 35 H 1.09003 * 110.36645 * 81.82601 * 16 15 4 36 36 H 1.09005 * 110.31185 * 338.59844 * 22 20 18 37 37 H 1.08999 * 110.30972 * 100.76755 * 22 20 18 38 38 H 1.08996 * 109.91697 * 118.12826 * 23 22 20 39 39 H 1.08999 * 109.91256 * 239.22945 * 23 22 20 40 40 H 1.09001 * 109.46889 * 60.12542 * 25 24 23 41 41 H 1.08995 * 109.47534 * 180.12904 * 25 24 23 42 42 H 1.09006 * 109.46852 * 300.13021 * 25 24 23 43 43 H 1.09003 * 110.66447 * 202.35562 * 26 24 23 44 44 H 1.08996 * 110.67073 * 79.23036 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9006 1.0251 0.0000 4 6 2.0549 -0.7479 1.2437 5 1 2.9625 -0.2774 1.6220 6 7 1.0280 -0.8026 2.2872 7 6 1.3927 -0.9373 3.6003 8 1 2.4373 -1.0036 3.8665 9 6 0.4195 -0.9950 4.5884 10 7 -0.8534 -0.9148 4.2639 11 14 0.9167 -1.1866 6.3788 12 1 1.1021 0.1553 6.9873 13 1 -0.1462 -1.9200 7.1119 14 1 2.1895 -1.9473 6.4605 15 6 2.3556 -2.1674 0.6944 16 6 2.8617 -1.8474 -0.7342 17 7 2.0331 -0.7136 -1.1830 18 6 1.7783 -0.3859 -2.4652 19 8 1.0793 0.5722 -2.7189 20 6 2.3619 -1.2102 -3.5838 21 1 3.4482 -1.2513 -3.5044 22 6 1.9353 -0.6465 -4.9586 23 6 1.6491 -1.8841 -5.8294 24 7 1.9304 -3.0742 -4.9976 25 6 1.0132 -4.1741 -5.3250 26 6 1.7538 -2.6352 -3.5897 27 1 -0.3632 0.4980 0.8990 28 1 -0.3632 0.5295 -0.8807 29 1 -0.3634 -1.0275 -0.0182 30 1 0.0898 -0.7435 2.0481 31 1 -1.5334 -0.9547 4.9545 32 1 3.1311 -2.6578 1.2829 33 1 1.4503 -2.7735 0.6616 34 1 2.7164 -2.7062 -1.3895 35 1 3.9135 -1.5620 -0.7090 36 1 1.0355 -0.0398 -4.8562 37 1 2.7427 -0.0569 -5.3929 38 1 0.6041 -1.8863 -6.1395 39 1 2.2965 -1.8788 -6.7062 40 1 1.1325 -4.4466 -6.3737 41 1 1.2405 -5.0358 -4.6975 42 1 -0.0140 -3.8557 -5.1470 43 1 2.3009 -3.2897 -2.9111 44 1 0.6966 -2.6035 -3.3263 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001075106127.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:48:21 Heat of formation + Delta-G solvation = -26.702385 kcal Electronic energy + Delta-G solvation = -23120.876667 eV Core-core repulsion = 19879.770218 eV Total energy + Delta-G solvation = -3241.106450 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.184 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -41.62975 -39.77011 -38.51216 -35.94826 -33.76789 -33.02160 -32.08855 -30.91094 -29.71313 -26.92560 -26.70819 -25.44556 -24.28415 -22.63157 -22.05954 -20.73560 -19.80145 -19.45753 -18.44567 -17.09518 -16.94542 -16.79392 -16.36631 -16.02142 -15.49052 -15.29589 -15.06779 -14.77625 -14.44307 -14.36217 -13.92545 -13.80742 -13.58276 -13.24417 -13.09997 -12.94090 -12.88221 -12.63803 -12.51067 -12.41473 -12.33529 -12.14424 -12.08556 -12.02774 -11.67264 -11.59686 -11.50838 -10.91214 -10.81751 -9.68038 -9.49741 -9.01270 -7.93543 -5.22630 1.49983 1.51206 1.55438 1.59422 1.90762 2.58126 2.99025 3.36980 3.44011 3.55003 3.66047 3.77435 3.90536 3.94403 4.16263 4.19101 4.24029 4.33077 4.37698 4.41918 4.50071 4.51303 4.53683 4.61422 4.65645 4.76017 4.84916 4.88937 4.96756 5.00838 5.05177 5.07456 5.17382 5.20295 5.26049 5.34253 5.50065 5.55400 5.77846 5.96307 6.28003 6.56865 7.12255 7.35360 8.08876 8.32349 9.30170 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.032402 B = 0.003722 C = 0.003607 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 863.939821 B = 7522.016490 C = 7760.831649 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.132 3.868 3 H 0.063 0.937 4 C 0.166 3.834 5 H 0.070 0.930 6 N -0.732 5.732 7 C -0.239 4.239 8 H 0.082 0.918 9 C -0.075 4.075 10 N -0.972 5.972 11 Si 0.973 3.027 12 H -0.290 1.290 13 H -0.300 1.300 14 H -0.265 1.265 15 C -0.144 4.144 16 C 0.100 3.900 17 N -0.606 5.606 18 C 0.530 3.470 19 O -0.581 6.581 20 C -0.101 4.101 21 H 0.131 0.869 22 C -0.118 4.118 23 C 0.037 3.963 24 N -0.523 5.523 25 C 0.012 3.988 26 C 0.047 3.953 27 H 0.056 0.944 28 H 0.053 0.947 29 H 0.046 0.954 30 H 0.380 0.620 31 H 0.250 0.750 32 H 0.090 0.910 33 H 0.055 0.945 34 H 0.100 0.900 35 H 0.095 0.905 36 H 0.063 0.937 37 H 0.091 0.909 38 H 0.044 0.956 39 H 0.098 0.902 40 H 0.084 0.916 41 H 0.078 0.922 42 H 0.023 0.977 43 H 0.108 0.892 44 H 0.032 0.968 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.553 -5.855 -19.408 22.410 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C 0.028 3.972 3 H 0.081 0.919 4 C 0.056 3.944 5 H 0.088 0.912 6 N -0.374 5.374 7 C -0.371 4.371 8 H 0.100 0.900 9 C -0.267 4.267 10 N -0.622 5.622 11 Si 0.802 3.198 12 H -0.218 1.218 13 H -0.226 1.226 14 H -0.190 1.190 15 C -0.185 4.185 16 C -0.022 4.022 17 N -0.338 5.338 18 C 0.319 3.681 19 O -0.462 6.462 20 C -0.122 4.122 21 H 0.148 0.852 22 C -0.157 4.157 23 C -0.091 4.091 24 N -0.247 5.247 25 C -0.136 4.136 26 C -0.081 4.081 27 H 0.075 0.925 28 H 0.072 0.928 29 H 0.065 0.935 30 H 0.215 0.785 31 H 0.059 0.941 32 H 0.108 0.892 33 H 0.074 0.926 34 H 0.118 0.882 35 H 0.113 0.887 36 H 0.082 0.918 37 H 0.109 0.891 38 H 0.063 0.937 39 H 0.117 0.883 40 H 0.102 0.898 41 H 0.097 0.903 42 H 0.041 0.959 43 H 0.126 0.874 44 H 0.051 0.949 Dipole moment (debyes) X Y Z Total from point charges 9.798 -5.563 -19.558 22.571 hybrid contribution -1.649 0.484 1.404 2.219 sum 8.149 -5.079 -18.154 20.537 Atomic orbital electron populations 1.21798 0.95945 1.01193 1.01124 1.21613 0.94151 0.95795 0.85691 0.91913 1.21401 0.92042 0.94304 0.86698 0.91157 1.42840 1.05022 1.87337 1.02204 1.19683 0.92915 1.40229 0.84280 0.89977 1.25544 0.95272 1.03796 1.02092 1.69820 0.99873 1.59380 1.33143 0.85150 0.77125 0.77297 0.80229 1.21777 1.22648 1.18984 1.23357 1.01443 0.98571 0.95155 1.22676 0.95334 0.88739 0.95436 1.48618 1.50028 1.30873 1.04322 1.20682 0.79936 0.84658 0.82783 1.90650 1.40634 1.31213 1.83676 1.22190 1.03022 0.94541 0.92490 0.85157 1.22359 1.02793 0.97819 0.92681 1.22946 1.00364 0.88517 0.97244 1.64834 1.50265 1.07149 1.02412 1.22603 0.93301 0.94522 1.03169 1.23263 0.98884 0.93905 0.92014 0.92539 0.92803 0.93463 0.78455 0.94122 0.89179 0.92575 0.88215 0.88658 0.91824 0.89079 0.93738 0.88327 0.89774 0.90319 0.95882 0.87443 0.94936 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.60 7.94 71.98 0.57 -5.03 16 2 C 0.13 4.67 3.47 45.34 0.16 4.83 16 3 H 0.06 2.31 8.14 -2.39 -0.02 2.29 16 4 C 0.17 6.15 3.49 46.18 0.16 6.31 16 5 H 0.07 2.55 8.09 -2.38 -0.02 2.53 16 6 N -0.73 -35.45 4.93 -317.32 -1.57 -37.01 16 7 C -0.24 -12.72 9.96 84.03 0.84 -11.88 16 8 H 0.08 4.10 7.83 -2.91 -0.02 4.08 16 9 C -0.07 -4.19 5.50 84.86 0.47 -3.73 16 10 N -0.97 -58.80 13.06 21.65 0.28 -58.51 16 11 Si 0.97 45.08 29.55 68.60 2.03 47.11 16 12 H -0.29 -13.38 7.11 99.48 0.71 -12.67 16 13 H -0.30 -14.16 7.11 99.48 0.71 -13.45 16 14 H -0.27 -11.43 7.11 99.48 0.71 -10.73 16 15 C -0.14 -4.29 6.77 31.98 0.22 -4.07 16 16 C 0.10 2.20 6.63 86.85 0.58 2.78 16 17 N -0.61 -17.38 3.08 -788.04 -2.43 -19.81 16 18 C 0.53 15.46 6.97 87.66 0.61 16.07 16 19 O -0.58 -21.64 14.35 -3.03 -0.04 -21.68 16 20 C -0.10 -2.08 2.82 -10.33 -0.03 -2.11 16 21 H 0.13 2.13 8.14 -2.39 -0.02 2.11 16 22 C -0.12 -2.34 6.33 31.47 0.20 -2.14 16 23 C 0.04 0.61 6.70 86.45 0.58 1.19 16 24 N -0.52 -9.06 5.55 -909.16 -5.05 -14.11 16 25 C 0.01 0.18 9.40 127.69 1.20 1.38 16 26 C 0.05 0.91 5.31 86.65 0.46 1.37 16 27 H 0.06 2.47 6.77 -2.39 -0.02 2.46 16 28 H 0.05 2.14 6.77 -2.39 -0.02 2.12 16 29 H 0.05 1.88 8.03 -2.39 -0.02 1.86 16 30 H 0.38 19.97 5.06 -92.71 -0.47 19.50 16 31 H 0.25 14.76 8.31 -92.71 -0.77 13.99 16 32 H 0.09 2.45 8.14 -2.38 -0.02 2.43 16 33 H 0.06 1.89 8.14 -2.39 -0.02 1.87 16 34 H 0.10 1.72 5.03 -2.39 -0.01 1.71 16 35 H 0.10 1.66 8.14 -2.39 -0.02 1.64 16 36 H 0.06 1.61 6.85 -2.38 -0.02 1.59 16 37 H 0.09 1.52 8.14 -2.39 -0.02 1.50 16 38 H 0.04 0.76 7.73 -2.39 -0.02 0.74 16 39 H 0.10 1.31 8.14 -2.39 -0.02 1.29 16 40 H 0.08 0.99 8.14 -2.39 -0.02 0.97 16 41 H 0.08 1.04 8.14 -2.39 -0.02 1.02 16 42 H 0.02 0.37 8.00 -2.38 -0.02 0.35 16 43 H 0.11 1.72 6.01 -2.39 -0.01 1.71 16 44 H 0.03 0.75 7.87 -2.39 -0.02 0.73 16 Total: -1.00 -67.15 338.76 -0.26 -67.41 By element: Atomic # 1 Polarization: 31.13 SS G_CDS: 0.51 Total: 31.64 kcal Atomic # 6 Polarization: -1.03 SS G_CDS: 6.01 Total: 4.97 kcal Atomic # 7 Polarization: -120.68 SS G_CDS: -8.76 Total: -129.45 kcal Atomic # 8 Polarization: -21.64 SS G_CDS: -0.04 Total: -21.68 kcal Atomic # 14 Polarization: 45.08 SS G_CDS: 2.03 Total: 47.11 kcal Total: -67.15 -0.26 -67.41 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001075106127.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.703 kcal (2) G-P(sol) polarization free energy of solvation -67.147 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.444 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.258 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.406 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.702 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds