Wall clock time and date at job start Tue Mar 31 2020 05:22:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31623 * 1 3 3 Si 1.86797 * 119.99802 * 2 1 4 4 H 1.48499 * 109.47114 * 179.97438 * 3 2 1 5 5 H 1.48501 * 109.47083 * 299.99906 * 3 2 1 6 6 H 1.48507 * 109.47020 * 59.99656 * 3 2 1 7 7 C 1.38811 * 120.00089 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00016 * 180.02562 * 7 2 1 9 9 N 1.36938 * 120.00161 * 0.02562 * 7 2 1 10 10 C 1.46498 * 120.00163 * 180.02562 * 9 7 2 11 11 C 1.53781 * 113.61650 * 154.99763 * 10 9 7 12 12 C 1.53785 * 87.07896 * 89.11524 * 11 10 9 13 13 C 1.52997 * 113.61646 * 139.98451 * 12 11 10 14 14 N 1.46499 * 109.47555 * 176.52802 * 13 12 11 15 15 C 1.34777 * 120.00199 * 180.02562 * 14 13 12 16 16 O 1.21283 * 119.99750 * 359.97438 * 15 14 13 17 17 C 1.50702 * 119.99928 * 180.27479 * 15 14 13 18 18 N 1.46902 * 109.47027 * 179.72353 * 17 15 14 19 19 C 1.48527 * 110.99964 * 52.60122 * 18 17 15 20 20 C 1.54940 * 103.22612 * 159.71987 * 19 18 17 21 21 C 1.54591 * 102.91912 * 322.58612 * 20 19 18 22 22 C 1.47895 * 110.99712 * 170.00079 * 18 17 15 23 23 C 1.53777 * 87.17707 * 25.38772 * 12 11 10 24 24 H 0.96993 * 120.00398 * 0.02562 * 1 2 3 25 25 H 0.97000 * 119.99908 * 359.97438 * 9 7 2 26 26 H 1.09006 * 112.85056 * 23.79610 * 10 9 7 27 27 H 1.08994 * 113.61430 * 334.56973 * 11 10 9 28 28 H 1.08995 * 113.61157 * 203.65951 * 11 10 9 29 29 H 1.09002 * 113.61186 * 270.80050 * 12 11 10 30 30 H 1.08998 * 109.47382 * 56.52364 * 13 12 11 31 31 H 1.09002 * 109.47216 * 296.52800 * 13 12 11 32 32 H 0.97000 * 119.99484 * 359.97438 * 14 13 12 33 33 H 1.09004 * 109.46965 * 299.72211 * 17 15 14 34 34 H 1.08994 * 109.46990 * 59.72065 * 17 15 14 35 35 H 1.09004 * 110.66790 * 278.15335 * 19 18 17 36 36 H 1.09002 * 110.67104 * 41.28679 * 19 18 17 37 37 H 1.09001 * 110.72384 * 204.22684 * 20 19 18 38 38 H 1.09005 * 110.72075 * 80.94329 * 20 19 18 39 39 H 1.08998 * 110.31091 * 263.03465 * 21 20 19 40 40 H 1.09004 * 110.39075 * 140.91663 * 21 20 19 41 41 H 1.09003 * 109.92105 * 333.50504 * 22 18 17 42 42 H 1.08999 * 109.92304 * 94.60534 * 22 18 17 43 43 H 1.09002 * 113.61320 * 89.15693 * 23 12 11 44 44 H 1.08998 * 113.61710 * 220.06313 * 23 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.7102 1.3464 0.0006 5 1 1.8914 2.3964 -1.2125 6 1 1.8913 2.3965 1.2125 7 6 2.0103 -1.2021 0.0005 8 1 3.0903 -1.2021 0.0010 9 7 1.3257 -2.3881 0.0005 10 6 2.0582 -3.6568 0.0017 11 6 1.2599 -4.8285 0.5971 12 6 0.7212 -5.0795 -0.8213 13 6 0.6206 -6.5621 -1.1853 14 7 0.0230 -6.6989 -2.5159 15 6 -0.1654 -7.9230 -3.0474 16 8 0.1602 -8.9113 -2.4244 17 6 -0.7744 -8.0634 -4.4188 18 7 -0.8666 -9.4867 -4.7702 19 6 -1.5619 -10.2540 -3.7053 20 6 -2.0270 -11.5370 -4.4388 21 6 -2.4280 -11.0103 -5.8358 22 6 -1.6711 -9.6788 -5.9963 23 6 1.9988 -4.4020 -1.3442 24 1 -0.4850 0.8400 -0.0004 25 1 0.3557 -2.3881 0.0005 26 1 3.0655 -3.5636 0.4077 27 1 0.4930 -4.5184 1.3068 28 1 1.8865 -5.6362 0.9753 29 1 -0.1902 -4.5255 -1.0465 30 1 -0.0027 -7.0747 -0.4527 31 1 1.6169 -7.0042 -1.1874 32 1 -0.2377 -5.9084 -3.0140 33 1 -1.7717 -7.6234 -4.4202 34 1 -0.1492 -7.5487 -5.1483 35 1 -0.8733 -10.5010 -2.8971 36 1 -2.4180 -9.6961 -3.3256 37 1 -2.8845 -11.9810 -3.9332 38 1 -1.2099 -12.2543 -4.5170 39 1 -3.5039 -10.8419 -5.8821 40 1 -2.1225 -11.7148 -6.6094 41 1 -2.3810 -8.8592 -6.1069 42 1 -1.0166 -9.7230 -6.8668 43 1 2.8279 -5.0929 -1.4976 44 1 1.8277 -3.7481 -2.1993 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001100984996.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:22:04 Heat of formation + Delta-G solvation = 0.950906 kcal Electronic energy + Delta-G solvation = -21690.875491 eV Core-core repulsion = 18450.968178 eV Total energy + Delta-G solvation = -3239.907313 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.184 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.21147 -38.86694 -38.01904 -34.65148 -33.24283 -32.54575 -30.23485 -29.04288 -28.13258 -25.93082 -25.07225 -23.67395 -21.90445 -21.40519 -21.07122 -20.46456 -18.40974 -17.45722 -17.03698 -16.47737 -16.04094 -15.61134 -15.38983 -14.90405 -14.41817 -14.24739 -13.95899 -13.67721 -13.37773 -13.12895 -12.92407 -12.60104 -12.42448 -12.24176 -11.93596 -11.79143 -11.58855 -11.42658 -11.16225 -11.05608 -10.87647 -10.84420 -10.49915 -10.16569 -10.03338 -9.72336 -9.68943 -9.43304 -9.00847 -8.90926 -8.63937 -7.02881 -5.83825 -3.12819 2.59902 3.04082 3.39404 3.45572 3.47593 3.83233 4.40933 4.45126 4.53270 4.68197 4.74579 4.98151 5.04072 5.05346 5.07760 5.13454 5.22174 5.29041 5.41979 5.42788 5.53875 5.59358 5.60996 5.69119 5.76742 5.84818 5.92233 5.93471 6.03072 6.10384 6.19923 6.35238 6.45698 6.57614 6.63730 6.66627 6.72405 6.88263 7.02119 7.51123 7.66976 8.22622 8.35470 9.46214 10.03711 10.37853 11.38723 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.036677 B = 0.002559 C = 0.002468 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 763.237532 B =10940.982935 C =11342.163150 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C -0.014 4.014 3 Si 0.908 3.092 4 H -0.280 1.280 5 H -0.291 1.291 6 H -0.291 1.291 7 C -0.241 4.241 8 H 0.073 0.927 9 N -0.706 5.706 10 C 0.167 3.833 11 C -0.148 4.148 12 C -0.120 4.120 13 C 0.133 3.867 14 N -0.724 5.724 15 C 0.511 3.489 16 O -0.532 6.532 17 C 0.025 3.975 18 N -0.502 5.502 19 C 0.031 3.969 20 C -0.126 4.126 21 C -0.131 4.131 22 C 0.033 3.967 23 C -0.168 4.168 24 H 0.255 0.745 25 H 0.385 0.615 26 H 0.062 0.938 27 H 0.068 0.932 28 H 0.077 0.923 29 H 0.092 0.908 30 H 0.062 0.938 31 H 0.066 0.934 32 H 0.402 0.598 33 H 0.064 0.936 34 H 0.106 0.894 35 H 0.113 0.887 36 H 0.036 0.964 37 H 0.069 0.931 38 H 0.074 0.926 39 H 0.065 0.935 40 H 0.071 0.929 41 H 0.045 0.955 42 H 0.080 0.920 43 H 0.067 0.933 44 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.550 -19.565 -10.045 22.459 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.581 5.581 2 C -0.210 4.210 3 Si 0.739 3.261 4 H -0.205 1.205 5 H -0.218 1.218 6 H -0.218 1.218 7 C -0.372 4.372 8 H 0.091 0.909 9 N -0.345 5.345 10 C 0.055 3.945 11 C -0.187 4.187 12 C -0.138 4.138 13 C 0.009 3.991 14 N -0.376 5.376 15 C 0.296 3.704 16 O -0.409 6.409 17 C -0.106 4.106 18 N -0.226 5.226 19 C -0.096 4.096 20 C -0.164 4.164 21 C -0.170 4.170 22 C -0.095 4.095 23 C -0.209 4.209 24 H 0.065 0.935 25 H 0.219 0.781 26 H 0.081 0.919 27 H 0.087 0.913 28 H 0.095 0.905 29 H 0.110 0.890 30 H 0.080 0.920 31 H 0.084 0.916 32 H 0.236 0.764 33 H 0.082 0.918 34 H 0.124 0.876 35 H 0.131 0.869 36 H 0.055 0.945 37 H 0.088 0.912 38 H 0.093 0.907 39 H 0.084 0.916 40 H 0.090 0.910 41 H 0.063 0.937 42 H 0.099 0.901 43 H 0.086 0.914 44 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -3.646 -20.268 -9.638 22.737 hybrid contribution -0.949 1.769 -0.290 2.029 sum -4.596 -18.499 -9.928 21.492 Atomic orbital electron populations 1.69668 1.05145 1.25688 1.57614 1.24769 0.95553 0.97821 1.02818 0.86096 0.78829 0.83939 0.77197 1.20474 1.21840 1.21824 1.19343 0.91168 0.83954 1.42757 0.90916 1.42182 1.05679 0.99465 1.87129 1.21098 0.95105 0.85574 0.92747 1.23438 1.00497 0.99701 0.95112 1.22708 0.99562 0.92961 0.98618 1.21458 0.98018 0.96967 0.82615 1.46054 1.63682 1.07979 1.19898 1.20431 0.78972 0.83357 0.87630 1.90627 1.50489 1.37016 1.62720 1.22247 1.01074 0.91750 0.95542 1.64679 1.47587 1.06873 1.03512 1.23535 0.97195 0.93290 0.95622 1.22531 1.00992 0.97873 0.95048 1.22394 0.99698 0.96671 0.98194 1.22941 0.95441 0.97082 0.94002 1.23908 0.95685 0.99607 1.01708 0.93487 0.78139 0.91945 0.91342 0.90452 0.88964 0.91963 0.91568 0.76388 0.91787 0.87634 0.86930 0.94528 0.91206 0.90716 0.91603 0.91001 0.93714 0.90145 0.91394 0.91517 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -27.61 13.06 55.49 0.72 -26.88 16 2 C -0.01 -0.38 5.50 -17.43 -0.10 -0.48 16 3 Si 0.91 22.02 29.55 -169.99 -5.02 17.00 16 4 H -0.28 -6.57 7.11 56.52 0.40 -6.16 16 5 H -0.29 -7.10 7.11 56.52 0.40 -6.69 16 6 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 7 C -0.24 -6.56 9.97 -15.06 -0.15 -6.71 16 8 H 0.07 1.93 7.83 -52.49 -0.41 1.52 16 9 N -0.71 -17.17 5.31 -52.55 -0.28 -17.45 16 10 C 0.17 3.21 4.57 -67.02 -0.31 2.90 16 11 C -0.15 -2.33 7.39 -25.92 -0.19 -2.52 16 12 C -0.12 -1.75 3.62 -89.81 -0.33 -2.07 16 13 C 0.13 1.74 5.50 -4.04 -0.02 1.72 16 14 N -0.72 -8.54 5.56 -60.29 -0.33 -8.87 16 15 C 0.51 6.47 7.54 -10.98 -0.08 6.39 16 16 O -0.53 -8.48 13.52 5.55 0.08 -8.40 16 17 C 0.03 0.25 5.52 -4.97 -0.03 0.22 16 18 N -0.50 -5.42 5.26 -231.89 -1.22 -6.64 16 19 C 0.03 0.33 5.30 -1.90 -0.01 0.32 16 20 C -0.13 -1.08 7.06 -24.87 -0.18 -1.25 16 21 C -0.13 -0.96 6.93 -25.38 -0.18 -1.14 16 22 C 0.03 0.27 6.69 -2.76 -0.02 0.26 16 23 C -0.17 -2.74 7.44 -25.83 -0.19 -2.93 16 24 H 0.26 7.30 8.31 -40.82 -0.34 6.96 16 25 H 0.38 9.88 7.90 -40.82 -0.32 9.56 16 26 H 0.06 1.21 8.10 -51.93 -0.42 0.79 16 27 H 0.07 1.14 8.14 -51.93 -0.42 0.72 16 28 H 0.08 1.07 8.10 -51.93 -0.42 0.65 16 29 H 0.09 1.44 8.14 -51.93 -0.42 1.02 16 30 H 0.06 0.85 8.14 -51.93 -0.42 0.42 16 31 H 0.07 0.92 7.88 -51.93 -0.41 0.51 16 32 H 0.40 4.03 8.47 -40.82 -0.35 3.69 16 33 H 0.06 0.54 7.81 -51.93 -0.41 0.13 16 34 H 0.11 0.89 8.14 -51.93 -0.42 0.46 16 35 H 0.11 1.51 5.97 -51.93 -0.31 1.20 16 36 H 0.04 0.40 8.02 -51.93 -0.42 -0.02 16 37 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 38 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 39 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 40 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 41 H 0.04 0.33 7.57 -51.93 -0.39 -0.06 16 42 H 0.08 0.62 8.14 -51.93 -0.42 0.19 16 43 H 0.07 1.01 7.92 -51.93 -0.41 0.59 16 44 H 0.07 1.20 8.14 -51.93 -0.42 0.77 16 LS Contribution 351.90 15.07 5.30 5.30 Total: -1.00 -31.18 351.90 -10.16 -41.34 By element: Atomic # 1 Polarization: 17.53 SS G_CDS: -7.63 Total: 9.90 kcal Atomic # 6 Polarization: -3.52 SS G_CDS: -1.77 Total: -5.30 kcal Atomic # 7 Polarization: -58.73 SS G_CDS: -1.11 Total: -59.84 kcal Atomic # 8 Polarization: -8.48 SS G_CDS: 0.08 Total: -8.40 kcal Atomic # 14 Polarization: 22.02 SS G_CDS: -5.02 Total: 17.00 kcal Total LS contribution 5.30 Total: 5.30 kcal Total: -31.18 -10.16 -41.34 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001100984996.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.286 kcal (2) G-P(sol) polarization free energy of solvation -31.179 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.107 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.156 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.335 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.951 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds