Wall clock time and date at job start Tue Mar 31 2020 05:54:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52995 * 109.47094 * 2 1 4 4 C 1.50697 * 109.47034 * 120.00482 * 2 1 3 5 5 N 1.29949 * 126.28535 * 299.97083 * 4 2 1 6 6 O 1.21302 * 110.25249 * 179.72957 * 5 4 2 7 7 C 1.33645 * 109.80647 * 0.46875 * 6 5 4 8 8 C 1.50698 * 126.54637 * 179.80258 * 7 6 5 9 9 C 1.53000 * 109.47212 * 269.68724 * 8 7 6 10 10 N 1.46900 * 109.47059 * 180.02562 * 9 8 7 11 11 C 1.46897 * 110.99727 * 179.97438 * 10 9 8 12 12 C 1.53005 * 109.46940 * 179.97438 * 11 10 9 13 13 H 1.08995 * 109.47448 * 304.99654 * 12 11 10 14 14 C 1.53001 * 109.47080 * 65.00472 * 12 11 10 15 15 C 1.53002 * 109.46893 * 184.99774 * 12 11 10 16 16 C 1.50706 * 109.47153 * 174.99718 * 15 12 11 17 17 H 1.07998 * 119.99503 * 0.02562 * 16 15 12 18 18 C 1.37871 * 120.00434 * 180.02562 * 16 15 12 19 19 N 1.31516 * 119.99826 * 359.72891 * 18 16 15 20 20 Si 1.86800 * 120.00406 * 180.02562 * 18 16 15 21 21 H 1.48501 * 109.47364 * 179.72558 * 20 18 16 22 22 H 1.48508 * 109.46883 * 299.72681 * 20 18 16 23 23 H 1.48497 * 109.46870 * 59.72491 * 20 18 16 24 24 N 1.31123 * 106.89980 * 359.53994 * 7 6 5 25 25 H 1.09000 * 109.47198 * 179.97438 * 1 2 3 26 26 H 1.09001 * 109.47103 * 299.99978 * 1 2 3 27 27 H 1.09000 * 109.46999 * 60.00268 * 1 2 3 28 28 H 1.09001 * 109.47103 * 240.00022 * 2 1 3 29 29 H 1.09002 * 109.47085 * 179.97438 * 3 2 1 30 30 H 1.08995 * 109.47646 * 299.99925 * 3 2 1 31 31 H 1.08999 * 109.46847 * 60.00502 * 3 2 1 32 32 H 1.09008 * 109.46884 * 149.68674 * 8 7 6 33 33 H 1.08999 * 109.47507 * 29.69458 * 8 7 6 34 34 H 1.08995 * 109.46999 * 60.00043 * 9 8 7 35 35 H 1.09003 * 109.46925 * 300.00280 * 9 8 7 36 36 H 1.00902 * 111.00039 * 56.04747 * 10 9 8 37 37 H 1.08997 * 109.47423 * 60.00043 * 11 10 9 38 38 H 1.09001 * 109.47481 * 299.99662 * 11 10 9 39 39 H 1.09001 * 109.46866 * 299.99538 * 14 12 11 40 40 H 1.09000 * 109.47309 * 59.99633 * 14 12 11 41 41 H 1.09000 * 109.46932 * 180.02562 * 14 12 11 42 42 H 1.09004 * 109.47178 * 55.00508 * 15 12 11 43 43 H 1.08993 * 109.47411 * 295.00191 * 15 12 11 44 44 H 0.97000 * 120.00236 * 0.27947 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0323 -0.7105 1.2304 5 7 1.7953 -0.3745 2.4631 6 8 2.3373 -1.1507 3.2215 7 6 2.9998 -2.0779 2.5234 8 6 3.8069 -3.2190 3.0870 9 6 5.2578 -2.7724 3.2772 10 7 6.0446 -3.8849 3.8260 11 6 7.4465 -3.4920 4.0218 12 6 8.2322 -4.6736 4.5938 13 1 7.7481 -5.0250 5.5049 14 6 8.2693 -5.8067 3.5663 15 6 9.6607 -4.2289 4.9142 16 6 10.3980 -5.3561 5.5903 17 1 9.8979 -6.2958 5.7727 18 6 11.7110 -5.1878 5.9759 19 7 12.3217 -4.0453 5.7489 20 14 12.6251 -6.5852 6.8132 21 1 14.0134 -6.1556 7.1189 22 1 11.9294 -6.9460 8.0747 23 1 12.6591 -7.7647 5.9117 24 7 2.8087 -1.8085 1.2544 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 0.5138 -0.8900 28 1 1.8934 -0.5138 -0.8900 29 1 3.1300 1.4425 0.0005 30 1 1.6767 1.9563 -0.8899 31 1 1.6767 1.9562 0.8900 32 1 3.7738 -4.0627 2.3975 33 1 3.3900 -3.5190 4.0484 34 1 5.2909 -1.9288 3.9665 35 1 5.6747 -2.4725 2.3157 36 1 5.9772 -4.7010 3.2364 37 1 7.4952 -2.6534 4.7164 38 1 7.8782 -3.1970 3.0653 39 1 7.2516 -6.1235 3.3380 40 1 8.7535 -5.4553 2.6552 41 1 8.8287 -6.6487 3.9740 42 1 9.6320 -3.3643 5.5774 43 1 10.1738 -3.9615 3.9905 44 1 11.8471 -3.3198 5.3139 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001116832686.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:54:24 Heat of formation + Delta-G solvation = 29.551716 kcal Electronic energy + Delta-G solvation = -21209.032201 eV Core-core repulsion = 17970.365112 eV Total energy + Delta-G solvation = -3238.667089 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.184 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -45.83464 -37.51832 -37.19904 -35.58117 -34.42522 -32.91818 -31.80193 -29.57565 -27.68154 -26.55264 -25.56992 -24.89927 -23.84118 -22.68452 -22.08528 -20.36022 -19.24521 -18.30026 -17.78734 -16.79831 -16.06654 -15.64321 -15.44774 -14.75977 -14.43568 -14.17773 -13.88926 -13.72958 -13.52146 -13.06488 -13.04374 -12.72259 -12.55687 -12.23916 -12.11354 -12.00628 -11.68604 -11.64128 -11.56067 -11.40265 -11.30881 -11.16848 -11.03972 -10.69703 -10.32321 -10.10098 -10.05756 -9.87336 -9.47312 -8.48969 -8.37209 -8.29281 -6.32079 -4.00416 0.88351 1.95364 2.53335 3.24601 3.45678 3.47633 3.66163 3.73453 4.22838 4.46422 4.56539 4.56757 4.58547 4.68125 4.85476 4.95156 5.13568 5.19111 5.30161 5.31893 5.39591 5.43985 5.47880 5.55178 5.58635 5.65764 5.70515 5.70911 5.75276 5.84650 5.92147 6.11687 6.32258 6.42572 6.74890 6.98971 7.00824 7.13368 7.41324 7.43591 7.59780 7.92135 8.26380 8.50436 8.92648 9.71070 11.08280 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.045249 B = 0.002217 C = 0.002183 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 618.647625 B =12627.863868 C =12824.202134 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.004 4.004 3 C -0.146 4.146 4 C 0.174 3.826 5 N -0.383 5.383 6 O 0.078 5.922 7 C 0.191 3.809 8 C -0.028 4.028 9 C 0.062 3.938 10 N -0.686 5.686 11 C 0.064 3.936 12 C -0.077 4.077 13 H 0.068 0.932 14 C -0.134 4.134 15 C 0.014 3.986 16 C -0.594 4.594 17 H 0.050 0.950 18 C 0.012 3.988 19 N -0.915 5.915 20 Si 1.068 2.932 21 H -0.283 1.283 22 H -0.288 1.288 23 H -0.289 1.289 24 N -0.483 5.483 25 H 0.058 0.942 26 H 0.063 0.937 27 H 0.071 0.929 28 H 0.101 0.899 29 H 0.059 0.941 30 H 0.071 0.929 31 H 0.063 0.937 32 H 0.109 0.891 33 H 0.113 0.887 34 H 0.078 0.922 35 H 0.036 0.964 36 H 0.341 0.659 37 H 0.068 0.932 38 H 0.026 0.974 39 H 0.034 0.966 40 H 0.040 0.960 41 H 0.064 0.936 42 H 0.006 0.994 43 H 0.005 0.995 44 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.035 6.167 -11.097 26.302 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.024 4.024 3 C -0.204 4.204 4 C -0.099 4.099 5 N -0.090 5.090 6 O 0.020 5.980 7 C -0.029 4.029 8 C -0.067 4.067 9 C -0.069 4.069 10 N -0.319 5.319 11 C -0.065 4.065 12 C -0.096 4.096 13 H 0.087 0.913 14 C -0.192 4.192 15 C -0.023 4.023 16 C -0.632 4.632 17 H 0.068 0.932 18 C -0.192 4.192 19 N -0.552 5.552 20 Si 0.896 3.104 21 H -0.209 1.209 22 H -0.215 1.215 23 H -0.215 1.215 24 N -0.217 5.217 25 H 0.077 0.923 26 H 0.082 0.918 27 H 0.090 0.910 28 H 0.119 0.881 29 H 0.078 0.922 30 H 0.090 0.910 31 H 0.082 0.918 32 H 0.127 0.873 33 H 0.131 0.869 34 H 0.097 0.903 35 H 0.055 0.945 36 H 0.160 0.840 37 H 0.087 0.913 38 H 0.044 0.956 39 H 0.053 0.947 40 H 0.059 0.941 41 H 0.084 0.916 42 H 0.024 0.976 43 H 0.023 0.977 44 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -22.197 6.509 -10.004 25.203 hybrid contribution -1.076 0.367 -1.505 1.886 sum -23.273 6.875 -11.509 26.859 Atomic orbital electron populations 1.21848 0.92851 1.02561 1.03010 1.19566 0.96413 0.95457 0.91007 1.21852 1.01596 0.93911 1.03010 1.25843 0.96706 0.92745 0.94634 1.74582 1.17879 1.13718 1.02843 1.85318 1.47657 1.29768 1.35262 1.28777 0.94315 0.93994 0.85859 1.20255 0.93043 0.90277 1.03129 1.21864 0.90469 0.95581 0.98983 1.60546 1.11960 1.06285 1.53061 1.22171 0.85591 0.99512 0.99181 1.21093 0.97381 0.93249 0.97911 0.91329 1.21742 0.98984 0.99806 0.98631 1.19244 0.90397 0.96882 0.95812 1.22023 0.99233 1.00009 1.41965 0.93166 1.25834 0.95494 1.01270 0.96562 1.70783 1.39913 1.03991 1.40505 0.83562 0.76167 0.74531 0.76131 1.20882 1.21464 1.21522 1.71929 1.17248 1.14303 1.18173 0.92304 0.91839 0.91004 0.88050 0.92212 0.90982 0.91830 0.87256 0.86862 0.90315 0.94536 0.83972 0.91328 0.95607 0.94726 0.94074 0.91648 0.97570 0.97672 0.92198 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.97 9.18 37.16 0.34 -0.63 16 2 C 0.00 -0.04 3.39 -91.77 -0.31 -0.35 16 3 C -0.15 -1.04 9.18 37.16 0.34 -0.70 16 4 C 0.17 1.97 6.72 -156.37 -1.05 0.92 16 5 N -0.38 -4.69 12.16 30.90 0.38 -4.32 16 6 O 0.08 0.92 11.31 18.09 0.20 1.12 16 7 C 0.19 2.06 7.77 -13.06 -0.10 1.96 16 8 C -0.03 -0.24 6.10 -27.88 -0.17 -0.41 16 9 C 0.06 0.67 5.67 -3.82 -0.02 0.65 16 10 N -0.69 -8.95 6.50 -113.78 -0.74 -9.69 16 11 C 0.06 1.05 5.14 -3.82 -0.02 1.03 16 12 C -0.08 -1.53 2.55 -90.62 -0.23 -1.77 16 13 H 0.07 1.43 8.14 -51.93 -0.42 1.00 16 14 C -0.13 -2.43 8.77 37.16 0.33 -2.10 16 15 C 0.01 0.35 3.76 -27.88 -0.10 0.25 16 16 C -0.59 -16.65 8.41 -34.44 -0.29 -16.94 16 17 H 0.05 1.38 7.06 -52.49 -0.37 1.01 16 18 C 0.01 0.34 5.46 -17.82 -0.10 0.24 16 19 N -0.92 -28.15 13.65 55.43 0.76 -27.39 16 20 Si 1.07 25.32 29.90 -169.99 -5.08 20.24 16 21 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 22 H -0.29 -6.52 7.11 56.52 0.40 -6.12 16 23 H -0.29 -6.52 7.11 56.52 0.40 -6.12 16 24 N -0.48 -5.79 11.55 -9.87 -0.11 -5.91 16 25 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 26 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 27 H 0.07 0.34 8.14 -51.93 -0.42 -0.08 16 28 H 0.10 0.76 8.14 -51.93 -0.42 0.34 16 29 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 30 H 0.07 0.37 8.14 -51.93 -0.42 -0.06 16 31 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 32 H 0.11 0.82 8.14 -51.92 -0.42 0.40 16 33 H 0.11 0.83 8.14 -51.93 -0.42 0.41 16 34 H 0.08 0.89 8.14 -51.93 -0.42 0.46 16 35 H 0.04 0.42 8.14 -51.93 -0.42 0.00 16 36 H 0.34 4.08 6.98 -39.29 -0.27 3.80 16 37 H 0.07 1.16 8.14 -51.93 -0.42 0.74 16 38 H 0.03 0.43 8.14 -51.93 -0.42 0.00 16 39 H 0.03 0.51 6.68 -51.93 -0.35 0.16 16 40 H 0.04 0.73 8.14 -51.93 -0.42 0.31 16 41 H 0.06 1.30 6.95 -51.93 -0.36 0.94 16 42 H 0.01 0.16 8.01 -51.93 -0.42 -0.26 16 43 H 0.01 0.13 8.00 -51.93 -0.42 -0.28 16 44 H 0.27 8.20 7.22 -40.82 -0.29 7.90 16 LS Contribution 361.51 15.07 5.45 5.45 Total: -1.00 -31.81 361.51 -8.16 -39.96 By element: Atomic # 1 Polarization: 5.99 SS G_CDS: -7.62 Total: -1.63 kcal Atomic # 6 Polarization: -16.46 SS G_CDS: -1.39 Total: -17.85 kcal Atomic # 7 Polarization: -47.58 SS G_CDS: 0.28 Total: -47.30 kcal Atomic # 8 Polarization: 0.92 SS G_CDS: 0.20 Total: 1.12 kcal Atomic # 14 Polarization: 25.32 SS G_CDS: -5.08 Total: 20.24 kcal Total LS contribution 5.45 Total: 5.45 kcal Total: -31.81 -8.16 -39.96 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001116832686.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.516 kcal (2) G-P(sol) polarization free energy of solvation -31.806 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.710 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.158 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.964 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.552 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds