Wall clock time and date at job start Tue Mar 31 2020 05:25:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86804 * 119.99644 * 2 1 4 4 H 1.48500 * 109.46911 * 179.97438 * 3 2 1 5 5 H 1.48503 * 109.47209 * 299.99388 * 3 2 1 6 6 H 1.48493 * 109.47294 * 59.99872 * 3 2 1 7 7 C 1.37871 * 120.00295 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00251 * 180.02562 * 7 2 1 9 9 C 1.50704 * 120.00320 * 0.02562 * 7 2 1 10 10 C 1.52992 * 109.47729 * 179.97438 * 9 7 2 11 11 C 1.52997 * 109.47406 * 180.02562 * 10 9 7 12 12 H 1.09000 * 109.46771 * 304.99867 * 11 10 9 13 13 N 1.46900 * 109.47175 * 64.99718 * 11 10 9 14 14 C 1.50700 * 109.47174 * 184.99847 * 11 10 9 15 15 O 1.21279 * 120.00360 * 260.00039 * 14 11 10 16 16 N 1.34775 * 119.99939 * 79.99634 * 14 11 10 17 17 C 1.46496 * 120.00291 * 179.97438 * 16 14 11 18 18 H 1.09001 * 115.56849 * 9.27614 * 17 16 14 19 19 C 1.53051 * 117.51182 * 223.54871 * 17 16 14 20 20 C 1.52738 * 59.94066 * 252.52800 * 19 17 16 21 21 C 1.53223 * 117.81422 * 107.74611 * 20 19 17 22 22 C 1.53257 * 108.62033 * 196.92706 * 21 20 19 23 23 N 1.46816 * 109.44277 * 304.40520 * 22 21 20 24 24 C 1.46828 * 111.54166 * 64.87142 * 23 22 21 25 25 C 1.53219 * 117.83248 * 252.23268 * 20 19 17 26 26 H 0.97002 * 120.00163 * 0.02562 * 1 2 3 27 27 H 1.09003 * 109.46648 * 59.99479 * 9 7 2 28 28 H 1.09005 * 109.46974 * 300.00560 * 9 7 2 29 29 H 1.08997 * 109.46914 * 59.99571 * 10 9 7 30 30 H 1.09011 * 109.47013 * 300.00104 * 10 9 7 31 31 H 1.00895 * 111.00030 * 296.04748 * 13 11 10 32 32 H 1.00897 * 110.99885 * 60.00239 * 13 11 10 33 33 H 0.97004 * 120.00061 * 0.02562 * 16 14 11 34 34 H 1.08997 * 117.50593 * 145.05900 * 19 17 16 35 35 H 1.08993 * 117.52706 * 359.97438 * 19 17 16 36 36 H 1.09007 * 109.60874 * 77.19140 * 21 20 19 37 37 H 1.08992 * 109.75881 * 316.75743 * 21 20 19 38 38 H 1.09002 * 109.47618 * 64.39817 * 22 21 20 39 39 H 1.09005 * 109.47848 * 184.41137 * 22 21 20 40 40 H 1.00902 * 110.99851 * 189.23032 * 23 22 21 41 41 H 1.09005 * 109.47313 * 175.13422 * 24 23 22 42 42 H 1.08994 * 109.47957 * 55.11792 * 24 23 22 43 43 H 1.08998 * 109.60914 * 282.81259 * 25 20 19 44 44 H 1.08998 * 109.61130 * 43.33943 * 25 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 3.7090 1.3465 0.0006 5 1 1.8904 2.3965 -1.2126 6 1 1.8903 2.3965 1.2124 7 6 2.0045 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2512 -2.4992 0.0005 10 6 2.2454 -3.6620 0.0005 11 6 1.4804 -4.9871 -0.0001 12 1 0.7880 -5.0072 0.8415 13 7 0.7291 -5.1181 -1.2556 14 6 2.4551 -6.1298 0.1237 15 8 2.7873 -6.7531 -0.8622 16 7 2.9576 -6.4591 1.3301 17 6 3.9046 -7.5703 1.4506 18 1 4.2737 -7.9781 0.5095 19 6 3.7065 -8.5451 2.6138 20 6 4.8667 -7.5520 2.6370 21 6 4.7783 -6.3718 3.6101 22 6 5.7938 -5.3070 3.1815 23 7 7.1314 -5.9079 3.1104 24 6 7.2074 -6.9317 2.0607 25 6 6.2812 -8.0991 2.4188 26 1 -0.4850 0.8400 -0.0004 27 1 0.6248 -2.5571 -0.8897 28 1 0.6241 -2.5567 0.8903 29 1 2.8720 -3.6042 0.8905 30 1 2.8721 -3.6043 -0.8895 31 1 0.0243 -4.4001 -1.3319 32 1 1.3491 -5.1022 -2.0514 33 1 2.6917 -5.9609 2.1187 34 1 3.9452 -9.5940 2.4379 35 1 2.8719 -8.3597 3.2898 36 1 5.0090 -6.7120 4.6197 37 1 3.7737 -5.9496 3.5870 38 1 5.5186 -4.9157 2.2021 39 1 5.7982 -4.4952 3.9090 40 1 7.8389 -5.2008 2.9779 41 1 8.2325 -7.2931 1.9790 42 1 6.8972 -6.5003 1.1091 43 1 6.6329 -8.5784 3.3323 44 1 6.2719 -8.8223 1.6033 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001118199059.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:25:02 Heat of formation + Delta-G solvation = -30.203959 kcal Electronic energy + Delta-G solvation = -22613.202543 eV Core-core repulsion = 19371.944254 eV Total energy + Delta-G solvation = -3241.258290 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.184 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.29075 -38.90145 -36.09537 -35.38061 -32.98911 -32.82211 -31.10186 -29.91870 -28.83421 -26.59279 -24.20038 -23.41213 -22.16172 -21.92624 -20.67511 -19.85968 -18.81303 -17.43069 -16.83456 -16.32176 -15.96806 -14.94177 -14.80304 -14.68648 -14.54520 -14.37983 -14.31469 -13.85711 -13.27719 -13.19049 -13.01105 -12.82303 -12.58503 -12.20830 -12.09406 -11.90771 -11.69457 -11.40861 -11.12099 -10.96929 -10.79025 -10.68684 -10.63778 -10.03330 -10.01552 -9.90507 -9.31806 -9.22833 -8.66916 -8.59963 -8.47385 -8.21116 -6.11616 -4.14847 2.81485 3.13255 3.23643 3.31850 3.35303 3.68676 4.04533 4.36583 4.49375 4.53607 4.62796 4.70471 4.94741 5.04642 5.15953 5.20978 5.24783 5.28464 5.36281 5.40621 5.54522 5.55589 5.62745 5.68201 5.71905 5.78969 5.85875 5.88009 6.02761 6.07721 6.24214 6.47188 6.56932 6.82616 6.83325 7.17047 7.40300 7.48558 7.57785 7.67170 7.85268 7.88299 8.27721 8.43599 8.91203 9.50330 10.99313 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.016356 B = 0.004276 C = 0.003617 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1711.486976 B = 6546.991503 C = 7738.531790 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.892 5.892 2 C 0.059 3.941 3 Si 0.892 3.108 4 H -0.273 1.273 5 H -0.283 1.283 6 H -0.283 1.283 7 C -0.523 4.523 8 H 0.054 0.946 9 C 0.024 3.976 10 C -0.136 4.136 11 C 0.075 3.925 12 H 0.096 0.904 13 N -0.830 5.830 14 C 0.529 3.471 15 O -0.537 6.537 16 N -0.705 5.705 17 C 0.094 3.906 18 H 0.133 0.867 19 C -0.185 4.185 20 C -0.131 4.131 21 C -0.077 4.077 22 C 0.058 3.942 23 N -0.691 5.691 24 C 0.059 3.941 25 C -0.075 4.075 26 H 0.261 0.739 27 H 0.018 0.982 28 H 0.019 0.981 29 H 0.055 0.945 30 H 0.054 0.946 31 H 0.355 0.645 32 H 0.345 0.655 33 H 0.401 0.599 34 H 0.100 0.900 35 H 0.097 0.903 36 H 0.075 0.925 37 H 0.065 0.935 38 H 0.037 0.963 39 H 0.076 0.924 40 H 0.343 0.657 41 H 0.073 0.927 42 H 0.033 0.967 43 H 0.075 0.925 44 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.285 -14.683 7.362 19.379 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.531 5.531 2 C -0.143 4.143 3 Si 0.720 3.280 4 H -0.198 1.198 5 H -0.209 1.209 6 H -0.209 1.209 7 C -0.561 4.561 8 H 0.073 0.927 9 C -0.013 4.013 10 C -0.176 4.176 11 C -0.040 4.040 12 H 0.114 0.886 13 N -0.362 5.362 14 C 0.317 3.683 15 O -0.413 6.413 16 N -0.356 5.356 17 C -0.013 4.013 18 H 0.151 0.849 19 C -0.224 4.224 20 C -0.133 4.133 21 C -0.115 4.115 22 C -0.071 4.071 23 N -0.322 5.322 24 C -0.071 4.071 25 C -0.113 4.113 26 H 0.071 0.929 27 H 0.036 0.964 28 H 0.037 0.963 29 H 0.073 0.927 30 H 0.073 0.927 31 H 0.170 0.830 32 H 0.159 0.841 33 H 0.237 0.763 34 H 0.119 0.881 35 H 0.116 0.884 36 H 0.094 0.906 37 H 0.084 0.916 38 H 0.055 0.945 39 H 0.095 0.905 40 H 0.160 0.840 41 H 0.091 0.909 42 H 0.051 0.949 43 H 0.094 0.906 44 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 9.980 -16.160 7.378 20.376 hybrid contribution 0.654 2.738 -0.525 2.864 sum 10.634 -13.422 6.854 18.445 Atomic orbital electron populations 1.69956 1.06015 1.26697 1.50474 1.25004 0.94856 0.99292 0.95104 0.86540 0.80084 0.83722 0.77700 1.19793 1.20911 1.20911 1.21200 0.93008 0.90871 1.51069 0.92730 1.19110 0.93713 0.91107 0.97393 1.22373 0.99852 0.93971 1.01400 1.21467 0.94641 0.92204 0.95679 0.88589 1.58734 1.18447 1.55914 1.03137 1.20920 0.80845 0.84267 0.82316 1.90622 1.60097 1.53444 1.37097 1.45467 1.45962 1.33982 1.10213 1.21679 0.94066 0.90827 0.94693 0.84940 1.23553 0.99912 0.96663 1.02254 1.21995 0.92161 0.99150 0.99979 1.21115 0.98341 0.93639 0.98374 1.21920 0.88697 0.96068 1.00432 1.60141 1.05570 1.17413 1.49121 1.21915 0.99465 0.93135 0.92568 1.21175 0.91654 0.96695 1.01818 0.92908 0.96368 0.96305 0.92656 0.92728 0.83000 0.84132 0.76308 0.88144 0.88446 0.90598 0.91650 0.94503 0.90540 0.83966 0.90869 0.94882 0.90598 0.91369 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.82 13.29 55.43 0.74 -25.08 16 2 C 0.06 1.64 5.46 -17.82 -0.10 1.54 16 3 Si 0.89 21.10 29.54 -169.99 -5.02 16.08 16 4 H -0.27 -6.36 7.11 56.52 0.40 -5.96 16 5 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 6 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 7 C -0.52 -14.21 9.11 -34.44 -0.31 -14.52 16 8 H 0.05 1.46 7.74 -52.49 -0.41 1.06 16 9 C 0.02 0.57 4.74 -27.89 -0.13 0.44 16 10 C -0.14 -2.64 4.78 -26.74 -0.13 -2.77 16 11 C 0.08 1.28 3.21 -68.87 -0.22 1.05 16 12 H 0.10 1.53 8.14 -51.93 -0.42 1.11 16 13 N -0.83 -14.35 8.94 -5.66 -0.05 -14.40 16 14 C 0.53 8.78 7.08 -10.99 -0.08 8.71 16 15 O -0.54 -10.53 15.82 5.56 0.09 -10.44 16 16 N -0.70 -9.25 5.34 -53.90 -0.29 -9.54 16 17 C 0.09 1.11 6.10 -68.03 -0.42 0.70 16 18 H 0.13 1.78 7.40 -51.93 -0.38 1.40 16 19 C -0.19 -1.75 9.92 -26.84 -0.27 -2.02 16 20 C -0.13 -1.29 2.02 -154.54 -0.31 -1.60 16 21 C -0.08 -0.75 5.67 -26.48 -0.15 -0.90 16 22 C 0.06 0.61 6.55 -3.74 -0.02 0.58 16 23 N -0.69 -6.69 6.77 -113.60 -0.77 -7.46 16 24 C 0.06 0.55 6.55 -3.73 -0.02 0.53 16 25 C -0.08 -0.68 5.87 -26.48 -0.16 -0.84 16 26 H 0.26 7.15 8.31 -40.82 -0.34 6.81 16 27 H 0.02 0.45 6.87 -51.93 -0.36 0.10 16 28 H 0.02 0.47 8.14 -51.93 -0.42 0.05 16 29 H 0.05 1.03 8.14 -51.93 -0.42 0.60 16 30 H 0.05 1.11 8.14 -51.92 -0.42 0.69 16 31 H 0.35 6.12 7.55 -39.29 -0.30 5.82 16 32 H 0.35 6.06 8.58 -39.29 -0.34 5.72 16 33 H 0.40 4.59 6.86 -40.82 -0.28 4.31 16 34 H 0.10 0.84 8.14 -51.93 -0.42 0.42 16 35 H 0.10 0.88 8.14 -51.93 -0.42 0.46 16 36 H 0.08 0.72 8.14 -51.92 -0.42 0.30 16 37 H 0.07 0.61 6.20 -51.93 -0.32 0.29 16 38 H 0.04 0.45 8.11 -51.93 -0.42 0.03 16 39 H 0.08 0.75 8.14 -51.93 -0.42 0.33 16 40 H 0.34 2.90 8.90 -39.29 -0.35 2.55 16 41 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 42 H 0.03 0.36 8.11 -51.93 -0.42 -0.06 16 43 H 0.08 0.66 8.14 -51.93 -0.42 0.24 16 44 H 0.07 0.56 8.08 -51.93 -0.42 0.14 16 LS Contribution 352.20 15.07 5.31 5.31 Total: -1.00 -30.86 352.20 -9.67 -40.54 By element: Atomic # 1 Polarization: 21.45 SS G_CDS: -7.36 Total: 14.10 kcal Atomic # 6 Polarization: -6.78 SS G_CDS: -2.32 Total: -9.10 kcal Atomic # 7 Polarization: -56.10 SS G_CDS: -0.37 Total: -56.48 kcal Atomic # 8 Polarization: -10.53 SS G_CDS: 0.09 Total: -10.44 kcal Atomic # 14 Polarization: 21.10 SS G_CDS: -5.02 Total: 16.08 kcal Total LS contribution 5.31 Total: 5.31 kcal Total: -30.86 -9.67 -40.54 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001118199059.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.332 kcal (2) G-P(sol) polarization free energy of solvation -30.865 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.533 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.671 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.536 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.204 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds