Wall clock time and date at job start Tue Mar 31 2020 05:25:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86804 * 119.99644 * 2 1 4 4 H 1.48500 * 109.46911 * 179.97438 * 3 2 1 5 5 H 1.48503 * 109.47209 * 299.99388 * 3 2 1 6 6 H 1.48493 * 109.47294 * 59.99872 * 3 2 1 7 7 C 1.37871 * 120.00295 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00251 * 180.02562 * 7 2 1 9 9 C 1.50704 * 120.00320 * 0.02562 * 7 2 1 10 10 C 1.52992 * 109.47729 * 179.97438 * 9 7 2 11 11 C 1.52997 * 109.47406 * 180.02562 * 10 9 7 12 12 H 1.09000 * 109.46771 * 304.99867 * 11 10 9 13 13 N 1.46900 * 109.47175 * 64.99718 * 11 10 9 14 14 C 1.50700 * 109.47174 * 184.99847 * 11 10 9 15 15 O 1.21279 * 120.00360 * 260.00039 * 14 11 10 16 16 N 1.34775 * 119.99939 * 79.99634 * 14 11 10 17 17 C 1.46496 * 120.00291 * 179.97438 * 16 14 11 18 18 H 1.09001 * 115.56849 * 9.27614 * 17 16 14 19 19 C 1.53051 * 117.51182 * 223.54871 * 17 16 14 20 20 C 1.52738 * 59.94066 * 252.52800 * 19 17 16 21 21 C 1.53223 * 117.81422 * 107.74611 * 20 19 17 22 22 C 1.53257 * 108.62033 * 196.92706 * 21 20 19 23 23 N 1.46816 * 109.44277 * 304.40520 * 22 21 20 24 24 C 1.46828 * 111.54166 * 64.87142 * 23 22 21 25 25 C 1.53219 * 117.83248 * 252.23268 * 20 19 17 26 26 H 0.97002 * 120.00163 * 0.02562 * 1 2 3 27 27 H 1.09003 * 109.46648 * 59.99479 * 9 7 2 28 28 H 1.09005 * 109.46974 * 300.00560 * 9 7 2 29 29 H 1.08997 * 109.46914 * 59.99571 * 10 9 7 30 30 H 1.09011 * 109.47013 * 300.00104 * 10 9 7 31 31 H 1.00895 * 111.00030 * 296.04748 * 13 11 10 32 32 H 1.00897 * 110.99885 * 60.00239 * 13 11 10 33 33 H 0.97004 * 120.00061 * 0.02562 * 16 14 11 34 34 H 1.08997 * 117.50593 * 145.05900 * 19 17 16 35 35 H 1.08993 * 117.52706 * 359.97438 * 19 17 16 36 36 H 1.09007 * 109.60874 * 77.19140 * 21 20 19 37 37 H 1.08992 * 109.75881 * 316.75743 * 21 20 19 38 38 H 1.09002 * 109.47618 * 64.39817 * 22 21 20 39 39 H 1.09005 * 109.47848 * 184.41137 * 22 21 20 40 40 H 1.00902 * 110.99851 * 189.23032 * 23 22 21 41 41 H 1.09005 * 109.47313 * 175.13422 * 24 23 22 42 42 H 1.08994 * 109.47957 * 55.11792 * 24 23 22 43 43 H 1.08998 * 109.60914 * 282.81259 * 25 20 19 44 44 H 1.08998 * 109.61130 * 43.33943 * 25 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 3.7090 1.3465 0.0006 5 1 1.8904 2.3965 -1.2126 6 1 1.8903 2.3965 1.2124 7 6 2.0045 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2512 -2.4992 0.0005 10 6 2.2454 -3.6620 0.0005 11 6 1.4804 -4.9871 -0.0001 12 1 0.7880 -5.0072 0.8415 13 7 0.7291 -5.1181 -1.2556 14 6 2.4551 -6.1298 0.1237 15 8 2.7873 -6.7531 -0.8622 16 7 2.9576 -6.4591 1.3301 17 6 3.9046 -7.5703 1.4506 18 1 4.2737 -7.9781 0.5095 19 6 3.7065 -8.5451 2.6138 20 6 4.8667 -7.5520 2.6370 21 6 4.7783 -6.3718 3.6101 22 6 5.7938 -5.3070 3.1815 23 7 7.1314 -5.9079 3.1104 24 6 7.2074 -6.9317 2.0607 25 6 6.2812 -8.0991 2.4188 26 1 -0.4850 0.8400 -0.0004 27 1 0.6248 -2.5571 -0.8897 28 1 0.6241 -2.5567 0.8903 29 1 2.8720 -3.6042 0.8905 30 1 2.8721 -3.6043 -0.8895 31 1 0.0243 -4.4001 -1.3319 32 1 1.3491 -5.1022 -2.0514 33 1 2.6917 -5.9609 2.1187 34 1 3.9452 -9.5940 2.4379 35 1 2.8719 -8.3597 3.2898 36 1 5.0090 -6.7120 4.6197 37 1 3.7737 -5.9496 3.5870 38 1 5.5186 -4.9157 2.2021 39 1 5.7982 -4.4952 3.9090 40 1 7.8389 -5.2008 2.9779 41 1 8.2325 -7.2931 1.9790 42 1 6.8972 -6.5003 1.1091 43 1 6.6329 -8.5784 3.3323 44 1 6.2719 -8.8223 1.6033 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001118199059.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:25:01 Heat of formation + Delta-G solvation = -53.505854 kcal Electronic energy + Delta-G solvation = -22614.212989 eV Core-core repulsion = 19371.944254 eV Total energy + Delta-G solvation = -3242.268735 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.184 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -41.35276 -40.00450 -37.22571 -36.73637 -34.85801 -34.02728 -31.88035 -31.71025 -29.67140 -28.19613 -25.90965 -24.19953 -23.31466 -22.77335 -22.17238 -21.21010 -19.70390 -18.88588 -18.16411 -17.71655 -17.06159 -16.54083 -16.09982 -15.87024 -15.72417 -15.56815 -15.45356 -14.93263 -14.71651 -14.62269 -14.08197 -13.91205 -13.71543 -13.48916 -13.34937 -13.01451 -12.89638 -12.77096 -12.64753 -12.52027 -12.18271 -11.84792 -11.74839 -11.70239 -11.40172 -11.30674 -10.89454 -10.67807 -10.57962 -9.73133 -9.61854 -9.42058 -8.22964 -6.33295 1.37349 1.39071 1.49953 1.52441 2.00745 2.38510 2.83026 3.10949 3.28651 3.65126 3.69513 3.72212 3.73411 3.82850 3.91912 4.09332 4.20970 4.26082 4.40535 4.53111 4.55030 4.61043 4.62716 4.78667 4.81674 4.87498 4.89211 4.93475 5.05425 5.08030 5.11723 5.28152 5.30572 5.44481 5.50649 5.63218 5.78763 6.03681 6.04245 6.19450 6.44575 6.44820 6.47622 6.81976 7.18796 7.36030 8.88018 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.016356 B = 0.004276 C = 0.003617 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1711.486976 B = 6546.991503 C = 7738.531790 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.926 5.926 2 C 0.007 3.993 3 Si 0.958 3.042 4 H -0.267 1.267 5 H -0.280 1.280 6 H -0.276 1.276 7 C -0.544 4.544 8 H 0.053 0.947 9 C 0.030 3.970 10 C -0.118 4.118 11 C 0.082 3.918 12 H 0.110 0.890 13 N -0.829 5.829 14 C 0.530 3.470 15 O -0.571 6.571 16 N -0.689 5.689 17 C 0.065 3.935 18 H 0.114 0.886 19 C -0.165 4.165 20 C -0.121 4.121 21 C -0.077 4.077 22 C 0.057 3.943 23 N -0.690 5.690 24 C 0.057 3.943 25 C -0.075 4.075 26 H 0.264 0.736 27 H 0.003 0.997 28 H 0.003 0.997 29 H 0.064 0.936 30 H 0.042 0.958 31 H 0.353 0.647 32 H 0.343 0.657 33 H 0.410 0.590 34 H 0.115 0.885 35 H 0.107 0.893 36 H 0.085 0.915 37 H 0.068 0.932 38 H 0.013 0.987 39 H 0.082 0.918 40 H 0.349 0.651 41 H 0.089 0.911 42 H 0.012 0.988 43 H 0.086 0.914 44 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.387 -15.232 8.841 20.972 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.566 5.566 2 C -0.191 4.191 3 Si 0.783 3.217 4 H -0.191 1.191 5 H -0.206 1.206 6 H -0.202 1.202 7 C -0.582 4.582 8 H 0.071 0.929 9 C -0.007 4.007 10 C -0.158 4.158 11 C -0.033 4.033 12 H 0.128 0.872 13 N -0.361 5.361 14 C 0.317 3.683 15 O -0.450 6.450 16 N -0.340 5.340 17 C -0.040 4.040 18 H 0.132 0.868 19 C -0.203 4.203 20 C -0.122 4.122 21 C -0.115 4.115 22 C -0.072 4.072 23 N -0.322 5.322 24 C -0.072 4.072 25 C -0.113 4.113 26 H 0.073 0.927 27 H 0.021 0.979 28 H 0.022 0.978 29 H 0.082 0.918 30 H 0.061 0.939 31 H 0.168 0.832 32 H 0.156 0.844 33 H 0.248 0.752 34 H 0.134 0.866 35 H 0.125 0.875 36 H 0.104 0.896 37 H 0.087 0.913 38 H 0.031 0.969 39 H 0.101 0.899 40 H 0.167 0.833 41 H 0.108 0.892 42 H 0.031 0.969 43 H 0.104 0.896 44 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 11.101 -16.721 8.899 21.955 hybrid contribution 0.333 2.883 -0.957 3.056 sum 11.434 -13.838 7.942 19.629 Atomic orbital electron populations 1.70062 1.07463 1.27716 1.51348 1.25835 0.95699 1.02884 0.94714 0.85510 0.78994 0.79371 0.77851 1.19075 1.20558 1.20182 1.21615 0.93255 0.92434 1.50855 0.92868 1.18971 0.93997 0.91932 0.95811 1.22109 0.98745 0.93775 1.01187 1.21400 0.94719 0.91183 0.96043 0.87234 1.58750 1.18378 1.55682 1.03271 1.20733 0.80719 0.83970 0.82888 1.90608 1.61329 1.54658 1.38387 1.45310 1.45249 1.34041 1.09388 1.21750 0.95501 0.91702 0.95093 0.86827 1.23631 0.99704 0.97003 0.99968 1.22044 0.92676 0.99306 0.98191 1.21146 0.98292 0.93333 0.98701 1.21916 0.89385 0.96610 0.99294 1.60189 1.05342 1.17633 1.49003 1.21959 1.00555 0.93169 0.91508 1.21221 0.90890 0.96627 1.02571 0.92705 0.97896 0.97822 0.91771 0.93949 0.83153 0.84354 0.75198 0.86632 0.87506 0.89630 0.91344 0.96907 0.89939 0.83312 0.89225 0.96935 0.89555 0.90672 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -53.91 13.29 21.44 0.28 -53.63 16 2 C 0.01 0.40 5.46 84.65 0.46 0.86 16 3 Si 0.96 43.08 29.54 68.60 2.03 45.11 16 4 H -0.27 -11.58 7.11 99.48 0.71 -10.88 16 5 H -0.28 -12.38 7.11 99.48 0.71 -11.67 16 6 H -0.28 -12.06 7.11 99.48 0.71 -11.35 16 7 C -0.54 -29.66 9.11 25.60 0.23 -29.43 16 8 H 0.05 2.85 7.74 -2.91 -0.02 2.83 16 9 C 0.03 1.46 4.74 29.85 0.14 1.61 16 10 C -0.12 -4.61 4.78 30.59 0.15 -4.46 16 11 C 0.08 2.76 3.21 44.17 0.14 2.90 16 12 H 0.11 3.40 8.14 -2.39 -0.02 3.38 16 13 N -0.83 -28.85 8.94 -171.80 -1.54 -30.39 16 14 C 0.53 17.45 7.08 87.66 0.62 18.08 16 15 O -0.57 -22.57 15.82 -3.03 -0.05 -22.62 16 16 N -0.69 -17.50 5.34 -442.85 -2.37 -19.86 16 17 C 0.07 1.48 6.10 44.93 0.27 1.76 16 18 H 0.11 3.06 7.40 -2.39 -0.02 3.04 16 19 C -0.16 -2.71 9.92 30.52 0.30 -2.41 16 20 C -0.12 -2.14 2.02 -52.20 -0.11 -2.25 16 21 C -0.08 -1.34 5.67 30.75 0.17 -1.17 16 22 C 0.06 1.13 6.55 86.41 0.57 1.70 16 23 N -0.69 -12.34 6.77 -513.32 -3.48 -15.82 16 24 C 0.06 1.00 6.55 86.40 0.57 1.57 16 25 C -0.08 -1.20 5.87 30.76 0.18 -1.02 16 26 H 0.26 14.49 8.31 -92.71 -0.77 13.72 16 27 H 0.00 0.14 6.87 -2.39 -0.02 0.13 16 28 H 0.00 0.18 8.14 -2.38 -0.02 0.16 16 29 H 0.06 2.36 8.14 -2.39 -0.02 2.34 16 30 H 0.04 1.74 8.14 -2.38 -0.02 1.73 16 31 H 0.35 12.37 7.55 -89.70 -0.68 11.70 16 32 H 0.34 12.24 8.58 -89.70 -0.77 11.47 16 33 H 0.41 8.82 6.86 -92.71 -0.64 8.19 16 34 H 0.12 1.59 8.14 -2.39 -0.02 1.57 16 35 H 0.11 1.60 8.14 -2.39 -0.02 1.58 16 36 H 0.09 1.38 8.14 -2.38 -0.02 1.36 16 37 H 0.07 1.14 6.20 -2.39 -0.01 1.13 16 38 H 0.01 0.31 8.11 -2.39 -0.02 0.29 16 39 H 0.08 1.51 8.14 -2.38 -0.02 1.49 16 40 H 0.35 5.47 8.90 -89.69 -0.80 4.67 16 41 H 0.09 1.26 8.14 -2.38 -0.02 1.24 16 42 H 0.01 0.27 8.11 -2.39 -0.02 0.25 16 43 H 0.09 1.25 8.14 -2.39 -0.02 1.23 16 44 H 0.07 1.10 8.08 -2.39 -0.02 1.08 16 Total: -1.00 -65.55 352.20 -3.26 -68.81 By element: Atomic # 1 Polarization: 42.51 SS G_CDS: -1.85 Total: 40.66 kcal Atomic # 6 Polarization: -15.97 SS G_CDS: 3.70 Total: -12.26 kcal Atomic # 7 Polarization: -112.60 SS G_CDS: -7.09 Total: -119.69 kcal Atomic # 8 Polarization: -22.57 SS G_CDS: -0.05 Total: -22.62 kcal Atomic # 14 Polarization: 43.08 SS G_CDS: 2.03 Total: 45.11 kcal Total: -65.55 -3.26 -68.81 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001118199059.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.304 kcal (2) G-P(sol) polarization free energy of solvation -65.546 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.241 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.264 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.810 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.506 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds