Wall clock time and date at job start Tue Mar 31 2020 05:25:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86801 * 119.99772 * 2 1 4 4 H 1.48504 * 109.47209 * 270.00481 * 3 2 1 5 5 H 1.48501 * 109.47358 * 29.99973 * 3 2 1 6 6 H 1.48496 * 109.47341 * 150.00585 * 3 2 1 7 7 C 1.37871 * 120.00482 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00483 * 180.02562 * 7 2 1 9 9 C 1.50701 * 119.99694 * 359.71466 * 7 2 1 10 10 C 1.53004 * 109.47211 * 180.27574 * 9 7 2 11 11 C 1.52997 * 109.47000 * 180.02562 * 10 9 7 12 12 H 1.08993 * 109.47366 * 305.00316 * 11 10 9 13 13 N 1.46897 * 109.47171 * 65.00520 * 11 10 9 14 14 C 1.50707 * 109.47050 * 185.00267 * 11 10 9 15 15 O 1.21277 * 119.99955 * 260.00608 * 14 11 10 16 16 N 1.34780 * 119.99831 * 80.00030 * 14 11 10 17 17 C 1.46499 * 119.99915 * 180.02562 * 16 14 11 18 18 H 1.08999 * 115.55350 * 350.68770 * 17 16 14 19 19 C 1.53032 * 117.50820 * 136.39509 * 17 16 14 20 20 C 1.52730 * 59.94685 * 107.46535 * 19 17 16 21 21 C 1.53219 * 117.84102 * 107.74410 * 20 19 17 22 22 C 1.53267 * 108.62065 * 197.00569 * 21 20 19 23 23 N 1.46810 * 109.44058 * 304.40676 * 22 21 20 24 24 C 1.46814 * 111.57780 * 64.82630 * 23 22 21 25 25 C 1.53216 * 117.84529 * 252.25573 * 20 19 17 26 26 H 0.96995 * 120.00207 * 359.97438 * 1 2 3 27 27 H 1.09000 * 109.47827 * 300.28170 * 9 7 2 28 28 H 1.09007 * 109.47098 * 60.28447 * 9 7 2 29 29 H 1.09000 * 109.47211 * 300.00973 * 10 9 7 30 30 H 1.09007 * 109.46376 * 60.00431 * 10 9 7 31 31 H 1.00910 * 110.99984 * 59.99679 * 13 11 10 32 32 H 1.00899 * 111.00098 * 183.95042 * 13 11 10 33 33 H 0.97003 * 120.00016 * 0.02562 * 16 14 11 34 34 H 1.09001 * 117.50628 * 214.94518 * 19 17 16 35 35 H 1.08999 * 117.50376 * 359.97438 * 19 17 16 36 36 H 1.09008 * 109.61182 * 316.73797 * 21 20 19 37 37 H 1.09000 * 109.61785 * 77.26138 * 21 20 19 38 38 H 1.09001 * 109.47820 * 184.41660 * 22 21 20 39 39 H 1.09003 * 109.47983 * 64.39816 * 22 21 20 40 40 H 1.00899 * 110.99937 * 189.20181 * 23 22 21 41 41 H 1.08997 * 109.47294 * 175.17997 * 24 23 22 42 42 H 1.09001 * 109.47479 * 55.16323 * 24 23 22 43 43 H 1.09001 * 109.61408 * 282.73972 * 25 20 19 44 44 H 1.08999 * 109.60892 * 43.25859 * 25 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4965 2.0466 -1.4001 5 1 1.4465 2.6527 0.7000 6 1 3.5467 1.4403 0.6999 7 6 2.0046 -1.1939 -0.0005 8 1 3.0846 -1.1939 -0.0001 9 6 1.2511 -2.4991 0.0054 10 6 2.2454 -3.6620 0.0104 11 6 1.4805 -4.9870 0.0158 12 1 0.7882 -5.0034 0.8574 13 7 0.7291 -5.1237 -1.2391 14 6 2.4551 -6.1292 0.1446 15 8 2.7872 -6.7568 -0.8386 16 7 2.9577 -6.4532 1.3525 17 6 3.9056 -7.5632 1.4777 18 1 4.0334 -8.1752 0.5849 19 6 5.1307 -7.3493 2.3694 20 6 3.9977 -8.2628 2.8325 21 6 4.2543 -9.7733 2.8407 22 6 2.9061 -10.4983 2.9163 23 7 2.1617 -10.0247 4.0897 24 6 1.8095 -8.6046 3.9686 25 6 3.0888 -7.7607 3.9592 26 1 -0.4850 0.8400 0.0004 27 1 0.6245 -2.5529 0.8956 28 1 0.6244 -2.5609 -0.8844 29 1 2.8721 -3.6081 -0.8798 30 1 2.8721 -3.6002 0.9002 31 1 1.3492 -5.1112 -2.0351 32 1 0.1648 -5.9601 -1.2334 33 1 2.6918 -5.9514 2.1389 34 1 6.0646 -7.8209 2.0634 35 1 5.2317 -6.3825 2.8626 36 1 4.7737 -10.0611 1.9265 37 1 4.8606 -10.0369 3.7074 38 1 3.0750 -11.5718 3.0019 39 1 2.3312 -10.2917 2.0135 40 1 1.3403 -10.5887 4.2486 41 1 1.1869 -8.3113 4.8139 42 1 1.2613 -8.4440 3.0403 43 1 3.6014 -7.8626 4.9157 44 1 2.8358 -6.7147 3.7864 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001118199061.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:25:04 Heat of formation + Delta-G solvation = -29.107549 kcal Electronic energy + Delta-G solvation = -22385.691667 eV Core-core repulsion = 19144.480922 eV Total energy + Delta-G solvation = -3241.210746 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.184 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.39677 -39.05305 -36.16830 -35.16280 -33.05430 -32.78955 -31.21734 -30.11226 -28.91390 -26.48280 -24.06247 -23.51760 -22.21125 -21.93371 -20.64786 -19.87837 -18.88080 -17.32827 -16.87673 -16.35848 -15.98229 -15.51595 -14.93011 -14.87447 -14.59282 -14.32197 -14.21817 -14.08405 -13.48917 -13.25811 -12.95954 -12.69188 -12.33868 -12.19749 -12.04245 -11.95724 -11.55933 -11.52373 -10.91867 -10.88922 -10.74431 -10.68578 -10.56052 -10.17010 -10.03431 -9.81339 -9.38839 -9.01585 -8.77740 -8.69989 -8.37309 -8.22552 -5.94823 -3.97082 2.65869 3.10978 3.34349 3.40612 3.43483 3.62161 3.91279 4.41424 4.45840 4.49057 4.55136 4.63412 4.82421 4.92195 5.02767 5.09452 5.16154 5.27086 5.29474 5.40685 5.48270 5.49816 5.52274 5.59275 5.69535 5.76212 5.80363 5.81587 5.95376 5.98597 6.39786 6.48466 6.63743 6.69406 7.03908 7.06616 7.34319 7.56154 7.74509 7.77119 7.94540 8.11674 8.28031 8.47229 9.10837 9.66195 11.16062 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.023993 B = 0.003357 C = 0.003274 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1166.712006 B = 8339.860379 C = 8550.953970 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.893 5.893 2 C 0.058 3.942 3 Si 0.889 3.111 4 H -0.281 1.281 5 H -0.287 1.287 6 H -0.275 1.275 7 C -0.523 4.523 8 H 0.052 0.948 9 C 0.031 3.969 10 C -0.095 4.095 11 C 0.079 3.921 12 H 0.097 0.903 13 N -0.806 5.806 14 C 0.487 3.513 15 O -0.553 6.553 16 N -0.701 5.701 17 C 0.089 3.911 18 H 0.132 0.868 19 C -0.184 4.184 20 C -0.131 4.131 21 C -0.076 4.076 22 C 0.060 3.940 23 N -0.691 5.691 24 C 0.060 3.940 25 C -0.078 4.078 26 H 0.259 0.741 27 H 0.013 0.987 28 H 0.035 0.965 29 H 0.053 0.947 30 H 0.053 0.947 31 H 0.348 0.652 32 H 0.333 0.667 33 H 0.402 0.598 34 H 0.101 0.899 35 H 0.099 0.901 36 H 0.068 0.932 37 H 0.076 0.924 38 H 0.073 0.927 39 H 0.031 0.969 40 H 0.342 0.658 41 H 0.076 0.924 42 H 0.033 0.967 43 H 0.077 0.923 44 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.589 -20.698 8.446 23.043 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.532 5.532 2 C -0.143 4.143 3 Si 0.717 3.283 4 H -0.207 1.207 5 H -0.213 1.213 6 H -0.200 1.200 7 C -0.561 4.561 8 H 0.070 0.930 9 C -0.006 4.006 10 C -0.134 4.134 11 C -0.037 4.037 12 H 0.115 0.885 13 N -0.334 5.334 14 C 0.273 3.727 15 O -0.430 6.430 16 N -0.352 5.352 17 C -0.018 4.018 18 H 0.149 0.851 19 C -0.223 4.223 20 C -0.133 4.133 21 C -0.114 4.114 22 C -0.070 4.070 23 N -0.322 5.322 24 C -0.069 4.069 25 C -0.116 4.116 26 H 0.069 0.931 27 H 0.031 0.969 28 H 0.053 0.947 29 H 0.072 0.928 30 H 0.071 0.929 31 H 0.162 0.838 32 H 0.145 0.855 33 H 0.239 0.761 34 H 0.119 0.881 35 H 0.118 0.882 36 H 0.086 0.914 37 H 0.095 0.905 38 H 0.092 0.908 39 H 0.050 0.950 40 H 0.160 0.840 41 H 0.094 0.906 42 H 0.051 0.949 43 H 0.096 0.904 44 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 5.846 -20.177 8.264 22.574 hybrid contribution 0.299 0.262 -0.340 0.523 sum 6.144 -19.915 7.924 22.297 Atomic orbital electron populations 1.69972 1.05948 1.26429 1.50831 1.24989 0.94810 0.99062 0.95462 0.86648 0.79815 0.83735 0.78089 1.20711 1.21280 1.20002 1.21276 0.92906 0.91316 1.50613 0.92983 1.19018 0.93541 0.89814 0.98202 1.21664 0.98854 0.92124 1.00712 1.21841 0.93470 0.93235 0.95110 0.88499 1.59003 1.26890 1.44212 1.03270 1.22813 0.81939 0.85596 0.82350 1.90633 1.61117 1.53997 1.37301 1.45654 1.45473 1.33602 1.10446 1.21729 0.92815 0.92111 0.95106 0.85066 1.23555 0.93707 1.01195 1.03817 1.21985 1.00982 0.94426 0.95912 1.21183 0.96785 0.91282 1.02155 1.21910 0.94840 0.98866 0.91344 1.60103 1.28065 1.03617 1.40435 1.21904 0.96427 0.88155 1.00410 1.21138 0.94853 0.98041 0.97612 0.93091 0.96885 0.94658 0.92792 0.92863 0.83776 0.85493 0.76136 0.88111 0.88223 0.91354 0.90514 0.90806 0.95032 0.84021 0.90593 0.94883 0.90430 0.91552 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.86 13.29 55.43 0.74 -26.13 16 2 C 0.06 1.66 5.46 -17.82 -0.10 1.57 16 3 Si 0.89 21.73 29.54 -169.99 -5.02 16.71 16 4 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 5 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 6 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 7 C -0.52 -14.76 9.11 -34.44 -0.31 -15.08 16 8 H 0.05 1.43 7.74 -52.49 -0.41 1.03 16 9 C 0.03 0.80 4.86 -27.88 -0.14 0.66 16 10 C -0.10 -1.91 4.78 -26.73 -0.13 -2.04 16 11 C 0.08 1.32 3.15 -68.86 -0.22 1.10 16 12 H 0.10 1.51 8.14 -51.93 -0.42 1.09 16 13 N -0.81 -13.56 8.44 -5.66 -0.05 -13.61 16 14 C 0.49 7.64 7.07 -10.98 -0.08 7.56 16 15 O -0.55 -10.17 15.82 5.56 0.09 -10.08 16 16 N -0.70 -8.83 5.35 -53.91 -0.29 -9.12 16 17 C 0.09 1.02 6.10 -68.04 -0.42 0.61 16 18 H 0.13 1.71 7.40 -51.93 -0.38 1.32 16 19 C -0.18 -1.78 9.92 -26.85 -0.27 -2.05 16 20 C -0.13 -1.21 2.02 -154.55 -0.31 -1.53 16 21 C -0.08 -0.63 5.87 -26.48 -0.16 -0.79 16 22 C 0.06 0.48 6.55 -3.73 -0.02 0.46 16 23 N -0.69 -5.61 6.77 -113.61 -0.77 -6.38 16 24 C 0.06 0.52 6.55 -3.74 -0.02 0.49 16 25 C -0.08 -0.69 5.67 -26.49 -0.15 -0.84 16 26 H 0.26 7.38 8.31 -40.82 -0.34 7.04 16 27 H 0.01 0.34 8.14 -51.93 -0.42 -0.08 16 28 H 0.04 0.97 7.75 -51.93 -0.40 0.57 16 29 H 0.05 1.14 8.14 -51.93 -0.42 0.71 16 30 H 0.05 1.01 8.14 -51.93 -0.42 0.59 16 31 H 0.35 5.97 8.58 -39.29 -0.34 5.63 16 32 H 0.33 4.86 9.06 -39.29 -0.36 4.51 16 33 H 0.40 4.46 6.85 -40.82 -0.28 4.18 16 34 H 0.10 0.88 8.14 -51.93 -0.42 0.45 16 35 H 0.10 0.97 8.14 -51.93 -0.42 0.55 16 36 H 0.07 0.53 8.08 -51.92 -0.42 0.11 16 37 H 0.08 0.63 8.14 -51.93 -0.42 0.20 16 38 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 39 H 0.03 0.29 8.12 -51.93 -0.42 -0.13 16 40 H 0.34 2.27 8.90 -39.29 -0.35 1.92 16 41 H 0.08 0.58 8.14 -51.93 -0.42 0.16 16 42 H 0.03 0.32 8.12 -51.93 -0.42 -0.10 16 43 H 0.08 0.68 8.14 -51.93 -0.42 0.26 16 44 H 0.07 0.57 6.18 -51.93 -0.32 0.25 16 LS Contribution 354.15 15.07 5.34 5.34 Total: -1.00 -32.17 354.15 -9.74 -41.91 By element: Atomic # 1 Polarization: 18.69 SS G_CDS: -7.46 Total: 11.23 kcal Atomic # 6 Polarization: -7.55 SS G_CDS: -2.32 Total: -9.87 kcal Atomic # 7 Polarization: -54.87 SS G_CDS: -0.37 Total: -55.24 kcal Atomic # 8 Polarization: -10.17 SS G_CDS: 0.09 Total: -10.08 kcal Atomic # 14 Polarization: 21.73 SS G_CDS: -5.02 Total: 16.71 kcal Total LS contribution 5.34 Total: 5.34 kcal Total: -32.17 -9.74 -41.91 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001118199061.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.805 kcal (2) G-P(sol) polarization free energy of solvation -32.169 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.364 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.743 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.912 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.108 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds