Wall clock time and date at job start Tue Mar 31 2020 05:25:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86798 * 120.00321 * 2 1 4 4 H 1.48500 * 109.47353 * 89.99665 * 3 2 1 5 5 H 1.48501 * 109.47293 * 210.00115 * 3 2 1 6 6 H 1.48504 * 109.46680 * 329.99913 * 3 2 1 7 7 C 1.37885 * 119.99913 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99964 * 359.97438 * 7 2 1 9 9 C 1.50696 * 119.99717 * 180.02562 * 7 2 1 10 10 C 1.53002 * 109.46997 * 180.02562 * 9 7 2 11 11 C 1.52997 * 109.47535 * 179.97438 * 10 9 7 12 12 H 1.08997 * 109.46989 * 54.99219 * 11 10 9 13 13 N 1.46902 * 109.46773 * 295.00006 * 11 10 9 14 14 C 1.50695 * 109.47535 * 174.99737 * 11 10 9 15 15 O 1.21283 * 120.00203 * 99.99517 * 14 11 10 16 16 N 1.34781 * 120.00012 * 279.99630 * 14 11 10 17 17 C 1.46494 * 119.99886 * 179.97438 * 16 14 11 18 18 H 1.08994 * 115.55821 * 350.69303 * 17 16 14 19 19 C 1.53036 * 117.50189 * 136.39459 * 17 16 14 20 20 C 1.52734 * 59.94795 * 107.47203 * 19 17 16 21 21 C 1.53222 * 117.84811 * 107.73924 * 20 19 17 22 22 C 1.53255 * 108.62144 * 197.00688 * 21 20 19 23 23 N 1.46814 * 109.44732 * 304.41103 * 22 21 20 24 24 C 1.46812 * 111.57637 * 64.82525 * 23 22 21 25 25 C 1.53227 * 117.84399 * 252.26207 * 20 19 17 26 26 H 0.97001 * 119.99646 * 359.97438 * 1 2 3 27 27 H 1.09005 * 109.47076 * 299.99625 * 9 7 2 28 28 H 1.09002 * 109.47753 * 59.99866 * 9 7 2 29 29 H 1.09005 * 109.46767 * 299.99649 * 10 9 7 30 30 H 1.09002 * 109.47113 * 59.99309 * 10 9 7 31 31 H 1.00904 * 110.99762 * 299.99575 * 13 11 10 32 32 H 1.00899 * 111.00097 * 63.94846 * 13 11 10 33 33 H 0.97003 * 119.99745 * 0.02562 * 16 14 11 34 34 H 1.09003 * 117.50637 * 214.94153 * 19 17 16 35 35 H 1.09001 * 117.50889 * 359.97438 * 19 17 16 36 36 H 1.09002 * 109.61080 * 316.75176 * 21 20 19 37 37 H 1.09004 * 109.60716 * 77.26666 * 21 20 19 38 38 H 1.08995 * 109.47562 * 184.41934 * 22 21 20 39 39 H 1.09003 * 109.48188 * 64.40523 * 22 21 20 40 40 H 1.00899 * 110.99841 * 189.20349 * 23 22 21 41 41 H 1.09001 * 109.47291 * 175.17746 * 24 23 22 42 42 H 1.08992 * 109.47517 * 55.17045 * 24 23 22 43 43 H 1.09004 * 109.61105 * 282.73352 * 25 20 19 44 44 H 1.09003 * 109.60919 * 43.24967 * 25 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 1.4001 5 1 3.5468 1.4401 -0.7001 6 1 1.4467 2.6526 -0.7001 7 6 2.0046 -1.1941 -0.0005 8 1 1.4646 -2.1294 -0.0005 9 6 3.5115 -1.1941 0.0000 10 6 4.0215 -2.6366 -0.0014 11 6 5.5515 -2.6367 -0.0014 12 1 5.9149 -2.0480 0.8409 13 7 6.0411 -2.0501 -1.2561 14 6 6.0539 -4.0521 0.1211 15 8 6.4278 -4.6504 -0.8654 16 7 6.0875 -4.6533 1.3269 17 6 6.5753 -6.0295 1.4459 18 1 6.7428 -6.5521 0.5042 19 6 7.5195 -6.3466 2.6078 20 6 6.0790 -6.8539 2.6324 21 6 5.8439 -8.3520 2.4130 22 6 4.3697 -8.5687 2.0547 23 7 3.5215 -7.9906 3.1045 24 6 3.6717 -6.5321 3.1777 25 6 5.1021 -6.1874 3.6067 26 1 -0.4850 0.8401 0.0004 27 1 3.8752 -0.6797 -0.8895 28 1 3.8746 -0.6808 0.8905 29 1 3.6579 -3.1514 0.8880 30 1 3.6585 -3.1495 -0.8920 31 1 5.7175 -2.5784 -2.0526 32 1 5.7716 -1.0807 -1.3315 33 1 5.7880 -4.1749 2.1159 34 1 8.3078 -7.0783 2.4306 35 1 7.7780 -5.5313 3.2834 36 1 6.4745 -8.7057 1.5973 37 1 6.0825 -8.8973 3.3262 38 1 4.1689 -9.6368 1.9725 39 1 4.1517 -8.0836 1.1033 40 1 2.5551 -8.2485 2.9713 41 1 2.9671 -6.1304 3.9059 42 1 3.4708 -6.0964 2.1991 43 1 5.2811 -6.5589 4.6157 44 1 5.2411 -5.1066 3.5820 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001118199062.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:25:06 Heat of formation + Delta-G solvation = -26.260019 kcal Electronic energy + Delta-G solvation = -22655.224563 eV Core-core repulsion = 19414.137295 eV Total energy + Delta-G solvation = -3241.087267 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.184 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.33458 -38.95872 -36.13864 -35.50675 -33.01854 -32.80415 -31.10539 -30.35367 -28.85787 -26.91638 -24.18172 -23.41307 -22.11749 -21.90629 -20.55518 -19.95203 -18.83765 -17.51445 -16.86698 -16.70847 -16.06345 -14.99131 -14.79853 -14.69508 -14.56849 -14.43880 -14.24812 -13.93269 -13.43617 -13.22464 -12.99463 -12.80306 -12.71581 -12.59404 -12.12900 -11.98229 -11.79324 -11.44854 -11.40005 -11.01116 -10.81409 -10.64276 -10.39849 -10.12357 -9.99529 -9.91979 -9.44844 -9.35106 -8.70337 -8.65205 -8.60133 -8.35108 -6.14832 -4.14555 2.74387 3.06899 3.22476 3.31201 3.32195 3.65838 4.05368 4.34824 4.47625 4.51566 4.60912 4.68443 4.85585 5.01288 5.04435 5.18191 5.20550 5.28627 5.34489 5.40475 5.41255 5.53567 5.55690 5.61936 5.68649 5.77368 5.83447 5.86650 6.01376 6.06769 6.09578 6.27936 6.51041 6.60960 6.83877 7.05111 7.17450 7.18396 7.29100 7.57979 7.63430 7.74660 8.36165 8.41247 8.88750 9.46391 10.98369 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.018432 B = 0.004230 C = 0.003703 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1518.716663 B = 6617.579371 C = 7559.459330 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.900 5.900 2 C 0.068 3.932 3 Si 0.881 3.119 4 H -0.277 1.277 5 H -0.265 1.265 6 H -0.287 1.287 7 C -0.524 4.524 8 H 0.071 0.929 9 C -0.010 4.010 10 C -0.129 4.129 11 C 0.072 3.928 12 H 0.096 0.904 13 N -0.830 5.830 14 C 0.530 3.470 15 O -0.535 6.535 16 N -0.704 5.704 17 C 0.093 3.907 18 H 0.133 0.867 19 C -0.185 4.185 20 C -0.130 4.130 21 C -0.076 4.076 22 C 0.059 3.941 23 N -0.691 5.691 24 C 0.058 3.942 25 C -0.077 4.077 26 H 0.264 0.736 27 H 0.016 0.984 28 H 0.014 0.986 29 H 0.061 0.939 30 H 0.061 0.939 31 H 0.348 0.652 32 H 0.351 0.649 33 H 0.401 0.599 34 H 0.100 0.900 35 H 0.097 0.903 36 H 0.068 0.932 37 H 0.076 0.924 38 H 0.073 0.927 39 H 0.033 0.967 40 H 0.343 0.657 41 H 0.077 0.923 42 H 0.037 0.963 43 H 0.076 0.924 44 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.256 -13.860 7.362 19.912 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.539 5.539 2 C -0.134 4.134 3 Si 0.708 3.292 4 H -0.202 1.202 5 H -0.190 1.190 6 H -0.213 1.213 7 C -0.562 4.562 8 H 0.089 0.911 9 C -0.048 4.048 10 C -0.168 4.168 11 C -0.043 4.043 12 H 0.114 0.886 13 N -0.362 5.362 14 C 0.317 3.683 15 O -0.411 6.411 16 N -0.356 5.356 17 C -0.013 4.013 18 H 0.151 0.849 19 C -0.224 4.224 20 C -0.132 4.132 21 C -0.114 4.114 22 C -0.071 4.071 23 N -0.323 5.323 24 C -0.071 4.071 25 C -0.115 4.115 26 H 0.074 0.926 27 H 0.034 0.966 28 H 0.032 0.968 29 H 0.080 0.920 30 H 0.079 0.921 31 H 0.162 0.838 32 H 0.166 0.834 33 H 0.237 0.763 34 H 0.119 0.881 35 H 0.115 0.885 36 H 0.086 0.914 37 H 0.094 0.906 38 H 0.092 0.908 39 H 0.051 0.949 40 H 0.161 0.839 41 H 0.095 0.905 42 H 0.055 0.945 43 H 0.094 0.906 44 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 13.552 -14.411 7.373 21.111 hybrid contribution -1.361 1.595 -0.508 2.157 sum 12.191 -12.816 6.865 18.973 Atomic orbital electron populations 1.69912 1.06346 1.27041 1.50588 1.25041 0.94752 0.99225 0.94373 0.86764 0.80323 0.83535 0.78544 1.20242 1.18978 1.21305 1.21050 0.89188 0.94510 1.51460 0.91126 1.19576 0.97587 0.91294 0.96335 1.22197 0.91206 1.01151 1.02277 1.21503 0.95664 0.91528 0.95604 0.88558 1.58729 1.66721 1.07450 1.03326 1.20808 0.76434 0.88662 0.82408 1.90633 1.47244 1.66178 1.37002 1.45453 1.66297 1.13645 1.10169 1.21685 1.00778 0.84087 0.94776 0.84901 1.23553 0.93105 1.03508 1.02200 1.22002 0.95712 0.95607 0.99874 1.21179 0.95759 0.92599 1.01822 1.21910 0.93377 0.99214 0.92590 1.60124 1.12255 1.10809 1.49079 1.21917 0.96931 0.87796 1.00488 1.21124 0.93102 0.98856 0.98378 0.92604 0.96562 0.96779 0.92023 0.92070 0.83834 0.83408 0.76302 0.88124 0.88467 0.91377 0.90583 0.90845 0.94873 0.83881 0.90480 0.94479 0.90555 0.91717 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.15 13.96 55.43 0.77 -26.37 16 2 C 0.07 1.92 5.47 -17.82 -0.10 1.82 16 3 Si 0.88 20.91 27.47 -169.99 -4.67 16.24 16 4 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 5 H -0.27 -5.95 6.54 56.52 0.37 -5.58 16 6 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 7 C -0.52 -14.37 9.66 -34.44 -0.33 -14.70 16 8 H 0.07 2.11 7.99 -52.49 -0.42 1.69 16 9 C -0.01 -0.23 3.81 -27.88 -0.11 -0.34 16 10 C -0.13 -2.38 4.78 -26.73 -0.13 -2.51 16 11 C 0.07 1.15 3.21 -68.87 -0.22 0.93 16 12 H 0.10 1.39 8.14 -51.93 -0.42 0.97 16 13 N -0.83 -13.38 8.94 -5.66 -0.05 -13.43 16 14 C 0.53 8.43 7.08 -10.99 -0.08 8.35 16 15 O -0.54 -10.17 15.82 5.55 0.09 -10.08 16 16 N -0.70 -8.87 5.35 -53.91 -0.29 -9.16 16 17 C 0.09 1.07 6.10 -68.04 -0.42 0.66 16 18 H 0.13 1.75 7.40 -51.93 -0.38 1.36 16 19 C -0.18 -1.70 9.93 -26.85 -0.27 -1.96 16 20 C -0.13 -1.25 2.02 -154.53 -0.31 -1.57 16 21 C -0.08 -0.67 5.87 -26.48 -0.16 -0.83 16 22 C 0.06 0.55 6.55 -3.74 -0.02 0.53 16 23 N -0.69 -6.77 6.77 -113.62 -0.77 -7.54 16 24 C 0.06 0.61 6.55 -3.74 -0.02 0.58 16 25 C -0.08 -0.74 5.67 -26.48 -0.15 -0.89 16 26 H 0.26 7.45 8.31 -40.82 -0.34 7.11 16 27 H 0.02 0.36 5.92 -51.93 -0.31 0.05 16 28 H 0.01 0.30 7.57 -51.93 -0.39 -0.09 16 29 H 0.06 1.11 8.14 -51.93 -0.42 0.68 16 30 H 0.06 1.21 8.14 -51.93 -0.42 0.79 16 31 H 0.35 5.74 8.58 -39.29 -0.34 5.40 16 32 H 0.35 5.48 7.55 -39.29 -0.30 5.18 16 33 H 0.40 4.35 6.85 -40.82 -0.28 4.07 16 34 H 0.10 0.82 8.14 -51.93 -0.42 0.40 16 35 H 0.10 0.85 8.14 -51.93 -0.42 0.42 16 36 H 0.07 0.56 8.08 -51.93 -0.42 0.14 16 37 H 0.08 0.66 8.14 -51.93 -0.42 0.23 16 38 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 39 H 0.03 0.36 8.12 -51.93 -0.42 -0.06 16 40 H 0.34 2.98 8.90 -39.29 -0.35 2.64 16 41 H 0.08 0.77 8.14 -51.93 -0.42 0.35 16 42 H 0.04 0.46 8.12 -51.93 -0.42 0.04 16 43 H 0.08 0.71 8.14 -51.93 -0.42 0.29 16 44 H 0.06 0.59 6.18 -51.93 -0.32 0.27 16 LS Contribution 348.59 15.07 5.25 5.25 Total: -1.00 -31.66 348.59 -9.30 -40.96 By element: Atomic # 1 Polarization: 21.37 SS G_CDS: -7.32 Total: 14.04 kcal Atomic # 6 Polarization: -7.61 SS G_CDS: -2.31 Total: -9.92 kcal Atomic # 7 Polarization: -56.16 SS G_CDS: -0.33 Total: -56.50 kcal Atomic # 8 Polarization: -10.17 SS G_CDS: 0.09 Total: -10.08 kcal Atomic # 14 Polarization: 20.91 SS G_CDS: -4.67 Total: 16.24 kcal Total LS contribution 5.25 Total: 5.25 kcal Total: -31.66 -9.30 -40.96 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001118199062.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.701 kcal (2) G-P(sol) polarization free energy of solvation -31.665 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.964 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.296 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.961 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.260 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds