Wall clock time and date at job start Tue Mar 31 2020 05:25:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86798 * 120.00321 * 2 1 4 4 H 1.48500 * 109.47353 * 89.99665 * 3 2 1 5 5 H 1.48501 * 109.47293 * 210.00115 * 3 2 1 6 6 H 1.48504 * 109.46680 * 329.99913 * 3 2 1 7 7 C 1.37885 * 119.99913 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99964 * 359.97438 * 7 2 1 9 9 C 1.50696 * 119.99717 * 180.02562 * 7 2 1 10 10 C 1.53002 * 109.46997 * 180.02562 * 9 7 2 11 11 C 1.52997 * 109.47535 * 179.97438 * 10 9 7 12 12 H 1.08997 * 109.46989 * 54.99219 * 11 10 9 13 13 N 1.46902 * 109.46773 * 295.00006 * 11 10 9 14 14 C 1.50695 * 109.47535 * 174.99737 * 11 10 9 15 15 O 1.21283 * 120.00203 * 99.99517 * 14 11 10 16 16 N 1.34781 * 120.00012 * 279.99630 * 14 11 10 17 17 C 1.46494 * 119.99886 * 179.97438 * 16 14 11 18 18 H 1.08994 * 115.55821 * 350.69303 * 17 16 14 19 19 C 1.53036 * 117.50189 * 136.39459 * 17 16 14 20 20 C 1.52734 * 59.94795 * 107.47203 * 19 17 16 21 21 C 1.53222 * 117.84811 * 107.73924 * 20 19 17 22 22 C 1.53255 * 108.62144 * 197.00688 * 21 20 19 23 23 N 1.46814 * 109.44732 * 304.41103 * 22 21 20 24 24 C 1.46812 * 111.57637 * 64.82525 * 23 22 21 25 25 C 1.53227 * 117.84399 * 252.26207 * 20 19 17 26 26 H 0.97001 * 119.99646 * 359.97438 * 1 2 3 27 27 H 1.09005 * 109.47076 * 299.99625 * 9 7 2 28 28 H 1.09002 * 109.47753 * 59.99866 * 9 7 2 29 29 H 1.09005 * 109.46767 * 299.99649 * 10 9 7 30 30 H 1.09002 * 109.47113 * 59.99309 * 10 9 7 31 31 H 1.00904 * 110.99762 * 299.99575 * 13 11 10 32 32 H 1.00899 * 111.00097 * 63.94846 * 13 11 10 33 33 H 0.97003 * 119.99745 * 0.02562 * 16 14 11 34 34 H 1.09003 * 117.50637 * 214.94153 * 19 17 16 35 35 H 1.09001 * 117.50889 * 359.97438 * 19 17 16 36 36 H 1.09002 * 109.61080 * 316.75176 * 21 20 19 37 37 H 1.09004 * 109.60716 * 77.26666 * 21 20 19 38 38 H 1.08995 * 109.47562 * 184.41934 * 22 21 20 39 39 H 1.09003 * 109.48188 * 64.40523 * 22 21 20 40 40 H 1.00899 * 110.99841 * 189.20349 * 23 22 21 41 41 H 1.09001 * 109.47291 * 175.17746 * 24 23 22 42 42 H 1.08992 * 109.47517 * 55.17045 * 24 23 22 43 43 H 1.09004 * 109.61105 * 282.73352 * 25 20 19 44 44 H 1.09003 * 109.60919 * 43.24967 * 25 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 1.4001 5 1 3.5468 1.4401 -0.7001 6 1 1.4467 2.6526 -0.7001 7 6 2.0046 -1.1941 -0.0005 8 1 1.4646 -2.1294 -0.0005 9 6 3.5115 -1.1941 0.0000 10 6 4.0215 -2.6366 -0.0014 11 6 5.5515 -2.6367 -0.0014 12 1 5.9149 -2.0480 0.8409 13 7 6.0411 -2.0501 -1.2561 14 6 6.0539 -4.0521 0.1211 15 8 6.4278 -4.6504 -0.8654 16 7 6.0875 -4.6533 1.3269 17 6 6.5753 -6.0295 1.4459 18 1 6.7428 -6.5521 0.5042 19 6 7.5195 -6.3466 2.6078 20 6 6.0790 -6.8539 2.6324 21 6 5.8439 -8.3520 2.4130 22 6 4.3697 -8.5687 2.0547 23 7 3.5215 -7.9906 3.1045 24 6 3.6717 -6.5321 3.1777 25 6 5.1021 -6.1874 3.6067 26 1 -0.4850 0.8401 0.0004 27 1 3.8752 -0.6797 -0.8895 28 1 3.8746 -0.6808 0.8905 29 1 3.6579 -3.1514 0.8880 30 1 3.6585 -3.1495 -0.8920 31 1 5.7175 -2.5784 -2.0526 32 1 5.7716 -1.0807 -1.3315 33 1 5.7880 -4.1749 2.1159 34 1 8.3078 -7.0783 2.4306 35 1 7.7780 -5.5313 3.2834 36 1 6.4745 -8.7057 1.5973 37 1 6.0825 -8.8973 3.3262 38 1 4.1689 -9.6368 1.9725 39 1 4.1517 -8.0836 1.1033 40 1 2.5551 -8.2485 2.9713 41 1 2.9671 -6.1304 3.9059 42 1 3.4708 -6.0964 2.1991 43 1 5.2811 -6.5589 4.6157 44 1 5.2411 -5.1066 3.5820 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001118199062.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:25:06 Heat of formation + Delta-G solvation = -51.364235 kcal Electronic energy + Delta-G solvation = -22656.313163 eV Core-core repulsion = 19414.137295 eV Total energy + Delta-G solvation = -3242.175868 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.184 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -41.35863 -40.01512 -37.27345 -36.75429 -34.82839 -34.03709 -32.10284 -31.89174 -29.69392 -28.42640 -25.77543 -24.20900 -23.18380 -22.76513 -22.07587 -21.23688 -19.72110 -19.10505 -18.39571 -17.72397 -17.07644 -16.31525 -16.14339 -15.90929 -15.75424 -15.58492 -15.48587 -14.99767 -14.76114 -14.65294 -14.41196 -13.94056 -13.72715 -13.54269 -13.35711 -13.14797 -12.89761 -12.75766 -12.66320 -12.20580 -12.12788 -11.87619 -11.72760 -11.69582 -11.42883 -11.41001 -10.92534 -10.78355 -10.69345 -9.73932 -9.62703 -9.43603 -8.31066 -6.36772 1.37430 1.39821 1.50553 1.51778 2.00917 2.35348 2.82732 3.04719 3.27294 3.63912 3.68427 3.70578 3.71703 3.82450 3.91336 4.06340 4.14800 4.24966 4.39196 4.52502 4.52882 4.56030 4.59871 4.68537 4.80999 4.86540 4.88020 4.91518 4.93667 5.07533 5.10700 5.27302 5.29742 5.32844 5.43426 5.50933 5.61077 6.02573 6.03163 6.23418 6.42162 6.45252 6.48306 6.71483 7.19071 7.28206 8.85750 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.018432 B = 0.004230 C = 0.003703 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1518.716663 B = 6617.579371 C = 7559.459330 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.953 5.953 2 C 0.004 3.996 3 Si 0.953 3.047 4 H -0.264 1.264 5 H -0.238 1.238 6 H -0.290 1.290 7 C -0.535 4.535 8 H 0.025 0.975 9 C -0.006 4.006 10 C -0.116 4.116 11 C 0.082 3.918 12 H 0.121 0.879 13 N -0.830 5.830 14 C 0.527 3.473 15 O -0.572 6.572 16 N -0.689 5.689 17 C 0.065 3.935 18 H 0.113 0.887 19 C -0.162 4.162 20 C -0.123 4.123 21 C -0.075 4.075 22 C 0.057 3.943 23 N -0.690 5.690 24 C 0.057 3.943 25 C -0.076 4.076 26 H 0.266 0.734 27 H 0.025 0.975 28 H 0.031 0.969 29 H 0.062 0.938 30 H 0.039 0.961 31 H 0.345 0.655 32 H 0.355 0.645 33 H 0.411 0.589 34 H 0.115 0.885 35 H 0.108 0.892 36 H 0.075 0.925 37 H 0.086 0.914 38 H 0.089 0.911 39 H 0.011 0.989 40 H 0.348 0.652 41 H 0.081 0.919 42 H 0.011 0.989 43 H 0.086 0.914 44 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.746 -13.371 8.882 21.797 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.593 5.593 2 C -0.193 4.193 3 Si 0.776 3.224 4 H -0.189 1.189 5 H -0.161 1.161 6 H -0.216 1.216 7 C -0.573 4.573 8 H 0.043 0.957 9 C -0.043 4.043 10 C -0.156 4.156 11 C -0.034 4.034 12 H 0.139 0.861 13 N -0.361 5.361 14 C 0.314 3.686 15 O -0.450 6.450 16 N -0.340 5.340 17 C -0.041 4.041 18 H 0.131 0.869 19 C -0.200 4.200 20 C -0.124 4.124 21 C -0.113 4.113 22 C -0.072 4.072 23 N -0.322 5.322 24 C -0.073 4.073 25 C -0.113 4.113 26 H 0.075 0.925 27 H 0.044 0.956 28 H 0.050 0.950 29 H 0.081 0.919 30 H 0.058 0.942 31 H 0.158 0.842 32 H 0.171 0.829 33 H 0.249 0.751 34 H 0.133 0.867 35 H 0.127 0.873 36 H 0.094 0.906 37 H 0.105 0.895 38 H 0.107 0.893 39 H 0.029 0.971 40 H 0.166 0.834 41 H 0.099 0.901 42 H 0.029 0.971 43 H 0.104 0.896 44 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 16.060 -13.947 8.934 23.071 hybrid contribution -2.228 1.311 -0.962 2.758 sum 13.832 -12.636 7.972 20.361 Atomic orbital electron populations 1.70082 1.08558 1.28249 1.52432 1.26070 0.95595 1.03740 0.93902 0.85615 0.79679 0.77714 0.79377 1.18885 1.16139 1.21588 1.21416 0.92155 0.92862 1.50842 0.95669 1.19503 0.93848 0.93671 0.97300 1.22004 0.93458 0.98815 1.01363 1.21436 0.93267 0.92204 0.96458 0.86136 1.58749 1.66469 1.07662 1.03259 1.20789 0.76340 0.88581 0.82842 1.90619 1.49231 1.66854 1.38332 1.45316 1.65123 1.14089 1.09503 1.21740 1.03700 0.83560 0.95068 0.86916 1.23626 0.92913 1.03615 0.99891 1.22044 0.96356 0.95726 0.98297 1.21218 0.95301 0.92200 1.02572 1.21961 0.93916 0.99900 0.91454 1.60183 1.12761 1.10241 1.48982 1.21917 0.97956 0.88204 0.99186 1.21145 0.92206 0.99278 0.98713 0.92511 0.95628 0.95027 0.91935 0.94219 0.84235 0.82946 0.75127 0.86656 0.87331 0.90650 0.89539 0.89258 0.97060 0.83401 0.90094 0.97099 0.89574 0.91170 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -58.94 13.96 21.45 0.30 -58.64 16 2 C 0.00 0.21 5.47 84.66 0.46 0.67 16 3 Si 0.95 42.17 27.47 68.60 1.88 44.05 16 4 H -0.26 -11.11 7.11 99.48 0.71 -10.40 16 5 H -0.24 -9.44 6.54 99.48 0.65 -8.79 16 6 H -0.29 -12.88 7.11 99.48 0.71 -12.17 16 7 C -0.53 -29.80 9.66 25.60 0.25 -29.56 16 8 H 0.02 1.57 7.99 -2.91 -0.02 1.55 16 9 C -0.01 -0.25 3.81 29.85 0.11 -0.13 16 10 C -0.12 -4.26 4.78 30.59 0.15 -4.12 16 11 C 0.08 2.46 3.21 44.17 0.14 2.60 16 12 H 0.12 3.08 8.14 -2.39 -0.02 3.06 16 13 N -0.83 -25.39 8.94 -171.81 -1.54 -26.93 16 14 C 0.53 16.39 7.08 87.65 0.62 17.01 16 15 O -0.57 -21.79 15.82 -3.04 -0.05 -21.84 16 16 N -0.69 -16.57 5.35 -442.86 -2.37 -18.94 16 17 C 0.07 1.44 6.10 44.93 0.27 1.71 16 18 H 0.11 2.98 7.40 -2.39 -0.02 2.96 16 19 C -0.16 -2.53 9.93 30.52 0.30 -2.23 16 20 C -0.12 -2.15 2.02 -52.20 -0.11 -2.25 16 21 C -0.08 -1.21 5.87 30.75 0.18 -1.03 16 22 C 0.06 1.03 6.55 86.40 0.57 1.60 16 23 N -0.69 -12.98 6.77 -513.39 -3.48 -16.45 16 24 C 0.06 1.17 6.55 86.41 0.57 1.73 16 25 C -0.08 -1.31 5.67 30.76 0.17 -1.14 16 26 H 0.27 15.36 8.31 -92.71 -0.77 14.59 16 27 H 0.03 1.06 5.92 -2.38 -0.01 1.04 16 28 H 0.03 1.26 7.57 -2.39 -0.02 1.24 16 29 H 0.06 2.24 8.14 -2.38 -0.02 2.23 16 30 H 0.04 1.60 8.14 -2.39 -0.02 1.58 16 31 H 0.34 11.14 8.58 -89.69 -0.77 10.37 16 32 H 0.36 10.21 7.55 -89.69 -0.68 9.54 16 33 H 0.41 8.15 6.85 -92.71 -0.63 7.51 16 34 H 0.12 1.51 8.14 -2.39 -0.02 1.49 16 35 H 0.11 1.50 8.14 -2.39 -0.02 1.48 16 36 H 0.07 1.11 8.08 -2.39 -0.02 1.09 16 37 H 0.09 1.26 8.14 -2.39 -0.02 1.24 16 38 H 0.09 1.32 8.14 -2.39 -0.02 1.30 16 39 H 0.01 0.25 8.12 -2.39 -0.02 0.23 16 40 H 0.35 5.91 8.90 -89.69 -0.80 5.12 16 41 H 0.08 1.57 8.14 -2.39 -0.02 1.55 16 42 H 0.01 0.27 8.12 -2.39 -0.02 0.26 16 43 H 0.09 1.38 8.14 -2.38 -0.02 1.36 16 44 H 0.07 1.13 6.18 -2.39 -0.01 1.11 16 Total: -1.00 -69.88 348.59 -3.46 -73.34 By element: Atomic # 1 Polarization: 42.45 SS G_CDS: -1.91 Total: 40.55 kcal Atomic # 6 Polarization: -18.82 SS G_CDS: 3.69 Total: -15.13 kcal Atomic # 7 Polarization: -113.88 SS G_CDS: -7.08 Total: -120.96 kcal Atomic # 8 Polarization: -21.79 SS G_CDS: -0.05 Total: -21.84 kcal Atomic # 14 Polarization: 42.17 SS G_CDS: 1.88 Total: 44.05 kcal Total: -69.88 -3.46 -73.34 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001118199062.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.971 kcal (2) G-P(sol) polarization free energy of solvation -69.878 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.907 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.457 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.335 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.364 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds