Wall clock time and date at job start Tue Mar 31 2020 05:25:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86805 * 120.00175 * 2 1 4 4 H 1.48498 * 109.46909 * 269.72379 * 3 2 1 5 5 H 1.48497 * 109.46701 * 29.72288 * 3 2 1 6 6 H 1.48500 * 109.46867 * 149.72394 * 3 2 1 7 7 C 1.37885 * 119.99913 * 179.72292 * 2 1 3 8 8 H 1.07999 * 119.99964 * 0.02562 * 7 2 1 9 9 C 1.50700 * 120.00047 * 180.02562 * 7 2 1 10 10 C 1.52992 * 109.47257 * 180.02562 * 9 7 2 11 11 C 1.53005 * 109.47274 * 179.97438 * 10 9 7 12 12 H 1.08997 * 109.46538 * 55.00268 * 11 10 9 13 13 N 1.46890 * 109.46962 * 295.00178 * 11 10 9 14 14 C 1.50700 * 109.47079 * 174.99638 * 11 10 9 15 15 O 1.21284 * 119.99854 * 100.00289 * 14 11 10 16 16 N 1.34777 * 120.00279 * 280.00292 * 14 11 10 17 17 C 1.46503 * 119.99700 * 179.97438 * 16 14 11 18 18 H 1.08993 * 115.55768 * 9.31321 * 17 16 14 19 19 C 1.53036 * 117.50397 * 223.60553 * 17 16 14 20 20 C 1.52737 * 59.94754 * 252.53530 * 19 17 16 21 21 C 1.53227 * 117.84093 * 107.74188 * 20 19 17 22 22 C 1.53258 * 108.61500 * 197.00553 * 21 20 19 23 23 N 1.46816 * 109.44857 * 304.40777 * 22 21 20 24 24 C 1.46806 * 111.57173 * 64.83042 * 23 22 21 25 25 C 1.53214 * 117.84490 * 252.25859 * 20 19 17 26 26 H 0.97001 * 119.99646 * 0.28069 * 1 2 3 27 27 H 1.09004 * 109.46932 * 300.00367 * 9 7 2 28 28 H 1.08997 * 109.47392 * 59.99705 * 9 7 2 29 29 H 1.09004 * 109.47330 * 299.99977 * 10 9 7 30 30 H 1.09005 * 109.47124 * 59.99773 * 10 9 7 31 31 H 1.00906 * 110.99701 * 176.04684 * 13 11 10 32 32 H 1.00899 * 111.00321 * 299.99061 * 13 11 10 33 33 H 0.96994 * 120.00029 * 0.02562 * 16 14 11 34 34 H 1.09004 * 117.50420 * 0.02562 * 19 17 16 35 35 H 1.08997 * 117.50442 * 145.02895 * 19 17 16 36 36 H 1.08994 * 109.61169 * 316.74302 * 21 20 19 37 37 H 1.09002 * 109.61183 * 77.26636 * 21 20 19 38 38 H 1.09006 * 109.47652 * 184.41886 * 22 21 20 39 39 H 1.08995 * 109.48491 * 64.40650 * 22 21 20 40 40 H 1.00905 * 110.99657 * 300.45744 * 23 22 21 41 41 H 1.09002 * 109.47291 * 175.18066 * 24 23 22 42 42 H 1.08991 * 109.48231 * 55.16923 * 24 23 22 43 43 H 1.08999 * 109.61371 * 282.73598 * 25 20 19 44 44 H 1.09004 * 109.61215 * 43.25701 * 25 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.5026 2.0430 -1.4001 5 1 1.4437 2.6543 0.6942 6 1 3.5438 1.4418 0.7059 7 6 2.0046 -1.1941 0.0058 8 1 1.4646 -2.1294 0.0099 9 6 3.5116 -1.1941 0.0064 10 6 4.0215 -2.6366 0.0126 11 6 5.5516 -2.6366 0.0125 12 1 5.9149 -2.0436 0.8518 13 7 6.0412 -2.0567 -1.2451 14 6 6.0539 -4.0515 0.1425 15 8 6.4280 -4.6549 -0.8408 16 7 6.0874 -4.6463 1.3515 17 6 6.5752 -6.0220 1.4776 18 1 7.0382 -6.4405 0.5841 19 6 5.7804 -6.9742 2.3740 20 6 7.1397 -6.4489 2.8314 21 6 7.1633 -5.4084 3.9560 22 6 8.5338 -4.7225 3.9592 23 7 9.5880 -5.7373 4.0786 24 6 9.6218 -6.6210 2.9068 25 6 8.3196 -7.4263 2.8374 26 1 -0.4850 0.8401 -0.0041 27 1 3.8752 -0.6844 -0.8859 28 1 3.8746 -0.6762 0.8940 29 1 3.6579 -3.1467 0.9046 30 1 3.6585 -3.1541 -0.8754 31 1 7.0478 -1.9862 -1.2431 32 1 5.7177 -2.5891 -2.0389 33 1 5.7879 -4.1639 2.1378 34 1 4.8944 -6.5773 2.8695 35 1 5.7205 -8.0192 2.0701 36 1 6.3834 -4.6666 3.7844 37 1 6.9985 -5.9013 4.9141 38 1 8.5941 -4.0349 4.8029 39 1 8.6657 -4.1692 3.0295 40 1 9.4832 -6.2691 4.9298 41 1 10.4673 -7.3038 2.9909 42 1 9.7271 -6.0218 2.0026 43 1 8.2477 -8.0813 3.7056 44 1 8.3060 -8.0218 1.9245 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001118199063.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:25:09 Heat of formation + Delta-G solvation = -27.807887 kcal Electronic energy + Delta-G solvation = -22454.756186 eV Core-core repulsion = 19213.601798 eV Total energy + Delta-G solvation = -3241.154388 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.184 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.54751 -39.22409 -36.27876 -35.30446 -33.08775 -32.76173 -31.33879 -30.51082 -28.62694 -26.82768 -24.08245 -23.52189 -22.56587 -21.94489 -20.53449 -19.96772 -19.39933 -17.39056 -16.78799 -16.58728 -15.79772 -15.60217 -15.02476 -14.90175 -14.71306 -14.31794 -14.20584 -14.05433 -13.76763 -13.48320 -13.00201 -12.78042 -12.63345 -12.37912 -12.22163 -11.84747 -11.68502 -11.64097 -11.13876 -11.00176 -10.89405 -10.82650 -10.42974 -10.39554 -10.02689 -9.72886 -9.61818 -9.13086 -8.81398 -8.68935 -8.52949 -8.41844 -6.00615 -3.98373 2.57008 3.01684 3.36776 3.43242 3.48409 3.51526 3.93331 4.30480 4.40273 4.47523 4.50217 4.54137 4.70791 4.74809 4.91615 4.97855 4.99383 5.19801 5.31635 5.33086 5.36795 5.38845 5.48142 5.50853 5.59698 5.64306 5.65898 5.73093 5.83017 5.86843 6.25718 6.38632 6.46224 6.65686 6.85029 7.02584 7.21127 7.36299 7.45264 7.55559 7.63690 7.84959 8.19290 8.56694 9.03964 9.62295 11.12870 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.024140 B = 0.003495 C = 0.003454 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1159.616813 B = 8009.978572 C = 8105.333810 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.906 5.906 2 C 0.065 3.935 3 Si 0.883 3.117 4 H -0.277 1.277 5 H -0.291 1.291 6 H -0.264 1.264 7 C -0.522 4.522 8 H 0.069 0.931 9 C -0.004 4.004 10 C -0.087 4.087 11 C 0.076 3.924 12 H 0.098 0.902 13 N -0.810 5.810 14 C 0.488 3.512 15 O -0.550 6.550 16 N -0.700 5.700 17 C 0.095 3.905 18 H 0.133 0.867 19 C -0.185 4.185 20 C -0.135 4.135 21 C -0.120 4.120 22 C 0.060 3.940 23 N -0.686 5.686 24 C 0.059 3.941 25 C -0.118 4.118 26 H 0.262 0.738 27 H 0.030 0.970 28 H 0.013 0.987 29 H 0.059 0.941 30 H 0.059 0.941 31 H 0.335 0.665 32 H 0.350 0.650 33 H 0.403 0.597 34 H 0.100 0.900 35 H 0.101 0.899 36 H 0.069 0.931 37 H 0.070 0.930 38 H 0.077 0.923 39 H 0.074 0.926 40 H 0.339 0.661 41 H 0.075 0.925 42 H 0.073 0.927 43 H 0.069 0.931 44 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.832 -13.734 9.082 25.015 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.546 5.546 2 C -0.135 4.135 3 Si 0.711 3.289 4 H -0.203 1.203 5 H -0.217 1.217 6 H -0.189 1.189 7 C -0.560 4.560 8 H 0.087 0.913 9 C -0.042 4.042 10 C -0.125 4.125 11 C -0.040 4.040 12 H 0.116 0.884 13 N -0.338 5.338 14 C 0.274 3.726 15 O -0.427 6.427 16 N -0.351 5.351 17 C -0.012 4.012 18 H 0.151 0.849 19 C -0.223 4.223 20 C -0.136 4.136 21 C -0.159 4.159 22 C -0.070 4.070 23 N -0.314 5.314 24 C -0.070 4.070 25 C -0.157 4.157 26 H 0.072 0.928 27 H 0.048 0.952 28 H 0.031 0.969 29 H 0.077 0.923 30 H 0.078 0.922 31 H 0.147 0.853 32 H 0.164 0.836 33 H 0.239 0.761 34 H 0.118 0.882 35 H 0.119 0.881 36 H 0.088 0.912 37 H 0.088 0.912 38 H 0.096 0.904 39 H 0.092 0.908 40 H 0.157 0.843 41 H 0.094 0.906 42 H 0.092 0.908 43 H 0.087 0.913 44 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 19.028 -12.921 8.298 24.452 hybrid contribution -0.342 -0.547 0.457 0.790 sum 18.686 -13.468 8.755 24.641 Atomic orbital electron populations 1.69927 1.06367 1.26839 1.51429 1.25024 0.94706 0.99246 0.94561 0.86726 0.80218 0.83375 0.78619 1.20258 1.21701 1.18901 1.21179 0.89738 0.94339 1.50730 0.91331 1.19482 0.96361 0.91116 0.97195 1.21473 0.87921 1.01611 1.01541 1.21864 0.99398 0.87638 0.95100 0.88417 1.59033 1.15405 1.56018 1.03366 1.22687 0.76557 0.90918 0.82403 1.90648 1.48431 1.66372 1.37284 1.45635 1.65614 1.13529 1.10364 1.21685 1.00974 0.83637 0.94896 0.84910 1.23575 0.94854 1.00043 1.03861 1.21958 0.95197 1.00109 0.96365 1.21838 0.99620 0.97312 0.97170 1.22032 0.87701 0.94381 1.02857 1.60485 1.48084 1.17847 1.04992 1.22032 0.95748 0.94945 0.94313 1.21870 0.94284 0.96917 1.02630 0.92825 0.95198 0.96903 0.92261 0.92182 0.85273 0.83561 0.76127 0.88201 0.88103 0.91247 0.91167 0.90435 0.90754 0.84304 0.90611 0.90821 0.91271 0.91037 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -28.15 13.96 55.43 0.77 -27.38 16 2 C 0.07 1.92 5.47 -17.82 -0.10 1.82 16 3 Si 0.88 21.98 27.47 -169.99 -4.67 17.31 16 4 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 5 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16 6 H -0.26 -6.29 6.54 56.52 0.37 -5.92 16 7 C -0.52 -14.85 9.66 -34.44 -0.33 -15.19 16 8 H 0.07 2.10 7.99 -52.49 -0.42 1.68 16 9 C 0.00 -0.10 3.93 -27.89 -0.11 -0.21 16 10 C -0.09 -1.67 4.78 -26.73 -0.13 -1.79 16 11 C 0.08 1.17 3.15 -68.87 -0.22 0.96 16 12 H 0.10 1.37 8.14 -51.93 -0.42 0.95 16 13 N -0.81 -12.56 8.44 -5.66 -0.05 -12.60 16 14 C 0.49 7.24 7.07 -10.99 -0.08 7.17 16 15 O -0.55 -9.70 15.82 5.55 0.09 -9.61 16 16 N -0.70 -8.28 5.34 -53.90 -0.29 -8.56 16 17 C 0.09 1.02 6.10 -68.03 -0.42 0.61 16 18 H 0.13 1.64 7.40 -51.93 -0.38 1.26 16 19 C -0.18 -1.69 9.93 -26.85 -0.27 -1.96 16 20 C -0.13 -1.12 2.02 -154.54 -0.31 -1.43 16 21 C -0.12 -0.91 5.64 -26.48 -0.15 -1.06 16 22 C 0.06 0.47 6.56 -3.74 -0.02 0.45 16 23 N -0.69 -5.25 6.82 -113.62 -0.77 -6.03 16 24 C 0.06 0.44 6.56 -3.74 -0.02 0.42 16 25 C -0.12 -0.84 5.83 -26.48 -0.15 -0.99 16 26 H 0.26 7.62 8.31 -40.82 -0.34 7.28 16 27 H 0.03 0.72 7.19 -51.93 -0.37 0.35 16 28 H 0.01 0.30 7.19 -51.93 -0.37 -0.08 16 29 H 0.06 1.08 8.14 -51.93 -0.42 0.66 16 30 H 0.06 1.22 8.14 -51.93 -0.42 0.80 16 31 H 0.34 4.47 9.06 -39.29 -0.36 4.11 16 32 H 0.35 5.58 8.58 -39.29 -0.34 5.24 16 33 H 0.40 4.13 6.85 -40.82 -0.28 3.85 16 34 H 0.10 0.94 8.14 -51.93 -0.42 0.52 16 35 H 0.10 0.84 8.14 -51.93 -0.42 0.42 16 36 H 0.07 0.54 6.18 -51.93 -0.32 0.22 16 37 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 38 H 0.08 0.55 8.14 -51.93 -0.42 0.13 16 39 H 0.07 0.69 8.12 -51.93 -0.42 0.27 16 40 H 0.34 2.15 8.81 -39.29 -0.35 1.81 16 41 H 0.08 0.48 8.14 -51.93 -0.42 0.06 16 42 H 0.07 0.66 8.12 -51.93 -0.42 0.24 16 43 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 44 H 0.07 0.51 8.08 -51.93 -0.42 0.09 16 LS Contribution 350.45 15.07 5.28 5.28 Total: -1.00 -32.61 350.45 -9.37 -41.98 By element: Atomic # 1 Polarization: 18.25 SS G_CDS: -7.42 Total: 10.83 kcal Atomic # 6 Polarization: -8.91 SS G_CDS: -2.31 Total: -11.21 kcal Atomic # 7 Polarization: -54.23 SS G_CDS: -0.34 Total: -54.57 kcal Atomic # 8 Polarization: -9.70 SS G_CDS: 0.09 Total: -9.61 kcal Atomic # 14 Polarization: 21.98 SS G_CDS: -4.67 Total: 17.31 kcal Total LS contribution 5.28 Total: 5.28 kcal Total: -32.61 -9.37 -41.98 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001118199063.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.173 kcal (2) G-P(sol) polarization free energy of solvation -32.610 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.438 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.370 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.981 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.808 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds