Wall clock time and date at job start Tue Mar 31 2020 05:26:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86804 * 119.99934 * 2 1 4 4 H 1.48499 * 109.47023 * 270.00240 * 3 2 1 5 5 H 1.48503 * 109.46840 * 30.00101 * 3 2 1 6 6 H 1.48501 * 109.46975 * 149.99876 * 3 2 1 7 7 C 1.37883 * 120.00081 * 180.02562 * 2 1 3 8 8 H 1.07996 * 119.99310 * 180.02562 * 7 2 1 9 9 C 1.50700 * 119.99886 * 359.97438 * 7 2 1 10 10 N 1.46900 * 109.46875 * 184.81982 * 9 7 2 11 11 C 1.46953 * 111.00167 * 64.49024 * 10 9 7 12 12 C 1.53044 * 109.36691 * 176.81358 * 11 10 9 13 13 N 1.46956 * 109.38496 * 58.38684 * 12 11 10 14 14 C 1.46906 * 111.00122 * 176.82507 * 13 12 11 15 15 C 1.53004 * 109.46967 * 170.00107 * 14 13 12 16 16 C 1.52990 * 109.46962 * 179.97438 * 15 14 13 17 17 H 1.09005 * 110.43745 * 52.45707 * 16 15 14 18 18 C 1.54627 * 110.48998 * 175.00086 * 16 15 14 19 19 C 1.54487 * 101.76580 * 93.87888 * 18 16 15 20 20 N 1.46759 * 105.47020 * 25.42139 * 19 18 16 21 21 C 1.34422 * 111.30104 * 342.98228 * 20 19 18 22 22 O 1.21286 * 124.93582 * 180.45486 * 21 20 19 23 23 C 1.46954 * 110.88304 * 300.71809 * 13 12 11 24 24 C 1.46955 * 110.99934 * 300.68921 * 10 9 7 25 25 H 0.96995 * 120.00423 * 359.97438 * 1 2 3 26 26 H 1.08993 * 109.47044 * 64.81839 * 9 7 2 27 27 H 1.09003 * 109.47255 * 304.81979 * 9 7 2 28 28 H 1.09003 * 109.48799 * 56.84195 * 11 10 9 29 29 H 1.09002 * 109.49006 * 296.78009 * 11 10 9 30 30 H 1.09002 * 109.49108 * 178.37000 * 12 11 10 31 31 H 1.09006 * 109.49020 * 298.41125 * 12 11 10 32 32 H 1.08999 * 109.46661 * 290.00121 * 14 13 12 33 33 H 1.08999 * 109.46978 * 50.00272 * 14 13 12 34 34 H 1.08998 * 109.47222 * 300.00287 * 15 14 13 35 35 H 1.08999 * 109.46700 * 59.99955 * 15 14 13 36 36 H 1.08999 * 110.97554 * 212.00383 * 18 16 15 37 37 H 1.09004 * 110.96767 * 335.72484 * 18 16 15 38 38 H 1.08994 * 110.23985 * 144.41942 * 19 18 16 39 39 H 1.08993 * 110.24477 * 266.41918 * 19 18 16 40 40 H 0.97002 * 124.34914 * 162.98731 * 20 19 18 41 41 H 1.09002 * 109.47053 * 299.32185 * 23 13 12 42 42 H 1.08994 * 109.50883 * 179.27176 * 23 13 12 43 43 H 1.09002 * 109.49101 * 303.15815 * 24 10 9 44 44 H 1.09005 * 109.49075 * 63.19975 * 24 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4966 2.0465 -1.4001 5 1 1.4465 2.6527 0.7001 6 1 3.5467 1.4402 0.7001 7 6 2.0046 -1.1941 -0.0005 8 1 3.0846 -1.1939 -0.0001 9 6 1.2511 -2.4992 -0.0005 10 7 2.2015 -3.6133 0.1152 11 6 2.9011 -3.5767 1.4070 12 6 3.8209 -4.7946 1.5208 13 7 4.7786 -4.7884 0.4061 14 6 5.7286 -5.9029 0.5221 15 6 6.5431 -6.0151 -0.7683 16 6 7.5330 -7.1753 -0.6473 17 1 7.0159 -8.0873 -0.3490 18 6 8.2814 -7.3898 -1.9832 19 6 9.5592 -6.5488 -1.7670 20 7 9.7511 -6.4951 -0.3131 21 6 8.6274 -6.8368 0.3408 22 8 8.5081 -6.8681 1.5473 23 6 4.0790 -4.8245 -0.8857 24 6 3.1592 -3.6065 -0.9995 25 1 -0.4850 0.8400 0.0004 26 1 0.6904 -2.5950 -0.9303 27 1 0.5615 -2.5207 0.8434 28 1 2.1713 -3.5952 2.2165 29 1 3.4951 -2.6651 1.4732 30 1 4.3626 -4.7543 2.4658 31 1 3.2241 -5.7059 1.4823 32 1 6.4004 -5.7218 1.3612 33 1 5.1816 -6.8309 0.6883 34 1 5.8714 -6.1961 -1.6074 35 1 7.0901 -5.0870 -0.9345 36 1 8.5267 -8.4418 -2.1285 37 1 7.6996 -7.0077 -2.8220 38 1 10.4131 -7.0312 -2.2426 39 1 9.4217 -5.5442 -2.1668 40 1 10.5820 -6.2450 0.1205 41 1 3.4850 -5.7361 -0.9519 42 1 4.8085 -4.8062 -1.6954 43 1 2.6175 -3.6468 -1.9445 44 1 3.7558 -2.6951 -0.9609 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001119310835.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:26:44 Heat of formation + Delta-G solvation = -28.321497 kcal Electronic energy + Delta-G solvation = -22605.270696 eV Core-core repulsion = 19364.094036 eV Total energy + Delta-G solvation = -3241.176660 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.184 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.73700 -38.70100 -36.66027 -35.58554 -33.23170 -32.16202 -30.36245 -29.71767 -27.89252 -26.25024 -24.71846 -23.13463 -22.17052 -22.01642 -21.05745 -20.09031 -19.01517 -17.63164 -16.38211 -16.29573 -15.76739 -15.61834 -14.65813 -14.58466 -14.36304 -14.11144 -14.05201 -13.88707 -13.58885 -13.18205 -13.10312 -12.67469 -12.61694 -12.25650 -11.81894 -11.71476 -11.37592 -11.25525 -11.02332 -10.97315 -10.77938 -10.56843 -10.45225 -10.20860 -10.03347 -9.81307 -9.75799 -9.45864 -9.39523 -8.39597 -7.95780 -7.11391 -5.98872 -4.07674 2.40383 3.09182 3.30155 3.36900 3.41222 3.96929 4.06912 4.22663 4.44333 4.49585 4.68463 5.00607 5.04761 5.07264 5.14671 5.22609 5.31401 5.43610 5.47199 5.49793 5.55337 5.68347 5.73246 5.86928 5.95462 6.04581 6.07787 6.17194 6.22478 6.38668 6.52375 6.67806 6.73521 6.83574 6.93543 7.27409 7.41786 7.48766 7.56635 7.94283 8.02812 8.11290 8.32449 8.36124 9.03414 9.59115 11.06128 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.025091 B = 0.003458 C = 0.003330 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1115.674585 B = 8094.288362 C = 8405.323678 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.893 5.893 2 C 0.064 3.936 3 Si 0.889 3.111 4 H -0.281 1.281 5 H -0.286 1.286 6 H -0.274 1.274 7 C -0.547 4.547 8 H 0.059 0.941 9 C 0.187 3.813 10 N -0.544 5.544 11 C 0.065 3.935 12 C 0.060 3.940 13 N -0.537 5.537 14 C 0.052 3.948 15 C -0.104 4.104 16 C -0.123 4.123 17 H 0.105 0.895 18 C -0.131 4.131 19 C 0.101 3.899 20 N -0.736 5.736 21 C 0.524 3.476 22 O -0.528 6.528 23 C 0.053 3.947 24 C 0.063 3.937 25 H 0.262 0.738 26 H 0.027 0.973 27 H 0.033 0.967 28 H 0.067 0.933 29 H 0.048 0.952 30 H 0.068 0.932 31 H 0.034 0.966 32 H 0.080 0.920 33 H 0.031 0.969 34 H 0.081 0.919 35 H 0.074 0.926 36 H 0.082 0.918 37 H 0.094 0.906 38 H 0.078 0.922 39 H 0.074 0.926 40 H 0.409 0.591 41 H 0.032 0.968 42 H 0.072 0.928 43 H 0.066 0.934 44 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.572 -15.400 -5.446 23.992 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.532 5.532 2 C -0.138 4.138 3 Si 0.716 3.284 4 H -0.207 1.207 5 H -0.212 1.212 6 H -0.199 1.199 7 C -0.586 4.586 8 H 0.077 0.923 9 C 0.061 3.939 10 N -0.269 5.269 11 C -0.064 4.064 12 C -0.068 4.068 13 N -0.262 5.262 14 C -0.075 4.075 15 C -0.142 4.142 16 C -0.145 4.145 17 H 0.123 0.877 18 C -0.169 4.169 19 C -0.024 4.024 20 N -0.392 5.392 21 C 0.310 3.690 22 O -0.403 6.403 23 C -0.075 4.075 24 C -0.066 4.066 25 H 0.071 0.929 26 H 0.045 0.955 27 H 0.051 0.949 28 H 0.086 0.914 29 H 0.066 0.934 30 H 0.087 0.913 31 H 0.052 0.948 32 H 0.099 0.901 33 H 0.049 0.951 34 H 0.099 0.901 35 H 0.093 0.907 36 H 0.101 0.899 37 H 0.112 0.888 38 H 0.097 0.903 39 H 0.092 0.908 40 H 0.247 0.753 41 H 0.051 0.949 42 H 0.090 0.910 43 H 0.085 0.915 44 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges 17.214 -15.331 -4.853 23.557 hybrid contribution 0.859 1.182 0.099 1.464 sum 18.073 -14.149 -4.753 23.440 Atomic orbital electron populations 1.69946 1.06024 1.26765 1.50420 1.24969 0.94745 0.99136 0.94979 0.86647 0.79976 0.83626 0.78105 1.20669 1.21195 1.19907 1.21792 0.93480 0.92040 1.51320 0.92269 1.19727 0.90876 0.85569 0.97703 1.62682 1.16664 1.46617 1.00898 1.21910 0.95438 0.95944 0.93086 1.22209 0.92877 0.98460 0.93225 1.62198 1.17996 1.42955 1.03064 1.22168 0.95018 0.92351 0.98004 1.21619 0.96708 0.96849 0.99030 1.22015 0.95904 1.01665 0.94955 0.87669 1.22704 0.95671 1.00980 0.97512 1.22072 0.98731 1.00877 0.80732 1.46225 1.14454 1.70445 1.08034 1.20871 0.84251 0.75477 0.88400 1.90761 1.82525 1.53009 1.14028 1.22333 0.95629 0.98435 0.91060 1.21938 0.93491 0.96023 0.95105 0.92874 0.95470 0.94889 0.91427 0.93421 0.91324 0.94817 0.90116 0.95086 0.90057 0.90692 0.89924 0.88751 0.90346 0.90816 0.75282 0.94942 0.91005 0.91528 0.93393 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.56 13.29 55.43 0.74 -25.82 16 2 C 0.06 1.82 5.46 -17.82 -0.10 1.73 16 3 Si 0.89 21.76 29.54 -169.99 -5.02 16.74 16 4 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 5 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 6 H -0.27 -6.68 7.11 56.52 0.40 -6.28 16 7 C -0.55 -15.28 7.67 -34.44 -0.26 -15.55 16 8 H 0.06 1.66 5.81 -52.49 -0.31 1.36 16 9 C 0.19 4.91 5.14 -4.98 -0.03 4.88 16 10 N -0.54 -12.06 4.92 -235.91 -1.16 -13.22 16 11 C 0.07 1.34 5.32 -3.77 -0.02 1.32 16 12 C 0.06 1.04 5.58 -3.77 -0.02 1.02 16 13 N -0.54 -8.77 4.86 -234.46 -1.14 -9.91 16 14 C 0.05 0.71 5.14 -3.82 -0.02 0.70 16 15 C -0.10 -1.08 3.88 -26.73 -0.10 -1.18 16 16 C -0.12 -1.06 2.94 -90.64 -0.27 -1.33 16 17 H 0.11 0.89 8.14 -51.93 -0.42 0.47 16 18 C -0.13 -0.68 6.71 -25.10 -0.17 -0.85 16 19 C 0.10 0.51 7.78 -3.12 -0.02 0.49 16 20 N -0.74 -5.79 6.24 -59.20 -0.37 -6.16 16 21 C 0.52 5.88 7.39 -10.86 -0.08 5.80 16 22 O -0.53 -8.23 16.92 5.55 0.09 -8.14 16 23 C 0.05 0.85 4.93 -3.77 -0.02 0.83 16 24 C 0.06 1.26 5.24 -3.77 -0.02 1.24 16 25 H 0.26 7.36 8.31 -40.82 -0.34 7.02 16 26 H 0.03 0.76 8.14 -51.93 -0.42 0.33 16 27 H 0.03 0.93 8.12 -51.93 -0.42 0.51 16 28 H 0.07 1.38 8.13 -51.93 -0.42 0.96 16 29 H 0.05 1.09 6.95 -51.93 -0.36 0.73 16 30 H 0.07 1.10 8.14 -51.93 -0.42 0.68 16 31 H 0.03 0.57 8.14 -51.93 -0.42 0.15 16 32 H 0.08 1.24 6.78 -51.93 -0.35 0.89 16 33 H 0.03 0.42 8.08 -51.93 -0.42 0.00 16 34 H 0.08 0.76 6.22 -51.93 -0.32 0.44 16 35 H 0.07 0.83 8.12 -51.93 -0.42 0.41 16 36 H 0.08 0.34 8.14 -51.93 -0.42 -0.08 16 37 H 0.09 0.40 7.87 -51.93 -0.41 -0.01 16 38 H 0.08 0.24 8.14 -51.93 -0.42 -0.18 16 39 H 0.07 0.35 8.14 -51.93 -0.42 -0.07 16 40 H 0.41 2.70 8.96 -40.82 -0.37 2.34 16 41 H 0.03 0.51 8.14 -51.93 -0.42 0.09 16 42 H 0.07 0.97 6.00 -51.93 -0.31 0.66 16 43 H 0.07 1.30 8.14 -51.93 -0.42 0.88 16 44 H 0.05 1.06 6.46 -51.93 -0.34 0.73 16 LS Contribution 339.34 15.07 5.11 5.11 Total: -1.00 -32.96 339.34 -10.26 -43.22 By element: Atomic # 1 Polarization: 6.48 SS G_CDS: -7.39 Total: -0.91 kcal Atomic # 6 Polarization: 0.22 SS G_CDS: -1.13 Total: -0.91 kcal Atomic # 7 Polarization: -53.18 SS G_CDS: -1.93 Total: -55.12 kcal Atomic # 8 Polarization: -8.23 SS G_CDS: 0.09 Total: -8.14 kcal Atomic # 14 Polarization: 21.76 SS G_CDS: -5.02 Total: 16.74 kcal Total LS contribution 5.11 Total: 5.11 kcal Total: -32.96 -10.26 -43.22 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001119310835.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.896 kcal (2) G-P(sol) polarization free energy of solvation -32.956 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.060 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.261 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.218 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.321 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds