Wall clock time and date at job start Tue Mar 31 2020 05:26:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86798 * 120.00321 * 2 1 4 4 H 1.48500 * 109.47353 * 89.99665 * 3 2 1 5 5 H 1.48501 * 109.47293 * 210.00115 * 3 2 1 6 6 H 1.48504 * 109.46680 * 329.99913 * 3 2 1 7 7 C 1.37885 * 119.99913 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99535 * 179.97438 * 7 2 1 9 9 C 1.50694 * 119.99902 * 359.97438 * 7 2 1 10 10 N 1.46903 * 109.47066 * 180.02562 * 9 7 2 11 11 C 1.46952 * 110.99858 * 293.80109 * 10 9 7 12 12 C 1.53051 * 109.36275 * 176.81282 * 11 10 9 13 13 N 1.46956 * 109.36658 * 58.40123 * 12 11 10 14 14 C 1.46903 * 111.00102 * 176.81195 * 13 12 11 15 15 C 1.52997 * 109.46943 * 293.79669 * 14 13 12 16 16 C 1.53003 * 109.46922 * 179.97438 * 15 14 13 17 17 H 1.08999 * 110.43395 * 303.91792 * 16 15 14 18 18 C 1.54627 * 110.48416 * 181.22770 * 16 15 14 19 19 C 1.54472 * 101.76597 * 266.11956 * 18 16 15 20 20 N 1.46765 * 105.47767 * 334.58857 * 19 18 16 21 21 C 1.34421 * 111.29970 * 17.01200 * 20 19 18 22 22 O 1.21281 * 124.94244 * 179.63116 * 21 20 19 23 23 C 1.46961 * 110.87957 * 300.67644 * 13 12 11 24 24 C 1.46957 * 111.00078 * 169.99798 * 10 9 7 25 25 H 0.97001 * 119.99646 * 359.97438 * 1 2 3 26 26 H 1.09007 * 109.47443 * 300.00164 * 9 7 2 27 27 H 1.09003 * 109.47615 * 60.00205 * 9 7 2 28 28 H 1.09001 * 109.48698 * 296.77600 * 11 10 9 29 29 H 1.08995 * 109.49098 * 56.84621 * 11 10 9 30 30 H 1.09007 * 109.48975 * 298.43095 * 12 11 10 31 31 H 1.08996 * 109.49029 * 178.36729 * 12 11 10 32 32 H 1.09000 * 109.47013 * 53.80028 * 14 13 12 33 33 H 1.08995 * 109.47185 * 173.79583 * 14 13 12 34 34 H 1.08994 * 109.47171 * 299.99939 * 15 14 13 35 35 H 1.09001 * 109.46791 * 60.00480 * 15 14 13 36 36 H 1.08998 * 110.96948 * 24.24417 * 18 16 15 37 37 H 1.09006 * 110.96522 * 148.00248 * 18 16 15 38 38 H 1.09000 * 110.24703 * 215.58564 * 19 18 16 39 39 H 1.09001 * 110.24654 * 93.58540 * 19 18 16 40 40 H 0.96993 * 124.35320 * 197.03767 * 20 19 18 41 41 H 1.09001 * 109.48899 * 299.35691 * 23 13 12 42 42 H 1.08995 * 109.49032 * 179.28587 * 23 13 12 43 43 H 1.09000 * 109.49358 * 303.16158 * 24 10 9 44 44 H 1.09007 * 109.48666 * 63.22008 * 24 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 1.4001 5 1 3.5468 1.4401 -0.7001 6 1 1.4467 2.6526 -0.7001 7 6 2.0046 -1.1941 -0.0005 8 1 3.0846 -1.1941 -0.0010 9 6 1.2511 -2.4992 -0.0005 10 7 2.2057 -3.6158 -0.0005 11 6 2.9687 -3.6562 -1.2558 12 6 4.0041 -4.7810 -1.1841 13 7 3.3194 -6.0593 -0.9460 14 6 4.2740 -7.1759 -0.9460 15 6 4.8669 -7.3400 -2.3468 16 6 5.8616 -8.5025 -2.3467 17 1 6.6312 -8.3448 -1.5911 18 6 6.4987 -8.6698 -3.7456 19 6 5.5765 -9.7301 -4.3870 20 7 5.0033 -10.4814 -3.2640 21 6 5.1445 -9.8128 -2.1065 22 8 4.7544 -10.2034 -1.0266 23 6 2.5564 -6.0188 0.3094 24 6 1.5209 -4.8940 0.2378 25 1 -0.4850 0.8401 0.0004 26 1 0.6247 -2.5571 0.8897 27 1 0.6240 -2.5568 -0.8903 28 1 2.2895 -3.8397 -2.0884 29 1 3.4766 -2.7033 -1.4035 30 1 4.6998 -4.5836 -0.3685 31 1 4.5517 -4.8317 -2.1252 32 1 5.0739 -6.9701 -0.2346 33 1 3.7600 -8.0933 -0.6592 34 1 4.0670 -7.5458 -3.0580 35 1 5.3809 -6.4225 -2.6334 36 1 6.4649 -7.7343 -4.3040 37 1 7.5214 -9.0386 -3.6669 38 1 6.1549 -10.3944 -5.0291 39 1 4.7855 -9.2455 -4.9593 40 1 4.5777 -11.3491 -3.3464 41 1 3.2355 -5.8354 1.1420 42 1 2.0484 -6.9718 0.4571 43 1 0.9732 -4.8434 1.1788 44 1 0.8253 -5.0915 -0.5779 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001119310836.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:26:46 Heat of formation + Delta-G solvation = -30.649616 kcal Electronic energy + Delta-G solvation = -22373.405173 eV Core-core repulsion = 19132.127558 eV Total energy + Delta-G solvation = -3241.277615 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.184 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.75441 -38.68061 -36.68240 -35.49555 -33.27792 -32.25067 -30.41136 -29.79522 -27.97951 -26.43304 -24.58623 -23.17511 -22.14116 -21.92403 -21.13167 -20.14676 -19.08991 -17.65816 -16.39037 -16.23582 -15.83790 -15.68361 -14.73626 -14.54830 -14.31154 -14.18556 -14.03877 -13.90032 -13.53945 -13.35496 -13.19171 -12.75792 -12.62204 -12.26286 -11.94036 -11.74490 -11.52754 -11.26844 -11.03514 -10.93191 -10.82262 -10.67026 -10.53284 -10.31221 -10.20803 -9.86323 -9.64144 -9.42263 -9.14425 -8.40988 -8.04896 -7.17167 -6.00044 -4.01351 2.37634 3.06729 3.33547 3.39262 3.42614 3.92852 4.05084 4.20140 4.44483 4.48029 4.68256 4.98997 4.99653 5.04870 5.09969 5.21568 5.35467 5.42024 5.44144 5.47864 5.54096 5.64275 5.72029 5.79982 5.90817 5.95222 6.05758 6.07903 6.16185 6.30489 6.49864 6.51467 6.66026 6.70695 6.73205 7.26341 7.33635 7.40631 7.45051 7.83392 8.00048 8.13484 8.26112 8.59661 9.06342 9.62668 11.10910 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.033965 B = 0.003072 C = 0.002924 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 824.181796 B = 9113.255546 C = 9573.960432 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.899 5.899 2 C 0.054 3.946 3 Si 0.898 3.102 4 H -0.281 1.281 5 H -0.274 1.274 6 H -0.288 1.288 7 C -0.506 4.506 8 H 0.062 0.938 9 C 0.193 3.807 10 N -0.539 5.539 11 C 0.068 3.932 12 C 0.055 3.945 13 N -0.540 5.540 14 C 0.051 3.949 15 C -0.098 4.098 16 C -0.124 4.124 17 H 0.105 0.895 18 C -0.131 4.131 19 C 0.101 3.899 20 N -0.735 5.735 21 C 0.524 3.476 22 O -0.529 6.529 23 C 0.062 3.938 24 C 0.057 3.943 25 H 0.261 0.739 26 H 0.029 0.971 27 H -0.009 1.009 28 H 0.027 0.973 29 H 0.085 0.915 30 H 0.037 0.963 31 H 0.070 0.930 32 H 0.033 0.967 33 H 0.080 0.920 34 H 0.074 0.926 35 H 0.078 0.922 36 H 0.094 0.906 37 H 0.082 0.918 38 H 0.078 0.922 39 H 0.074 0.926 40 H 0.409 0.591 41 H 0.038 0.962 42 H 0.069 0.931 43 H 0.071 0.929 44 H 0.030 0.970 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.655 -19.151 -9.848 24.978 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.539 5.539 2 C -0.147 4.147 3 Si 0.726 3.274 4 H -0.207 1.207 5 H -0.199 1.199 6 H -0.213 1.213 7 C -0.545 4.545 8 H 0.081 0.919 9 C 0.068 3.932 10 N -0.264 5.264 11 C -0.061 4.061 12 C -0.073 4.073 13 N -0.265 5.265 14 C -0.077 4.077 15 C -0.136 4.136 16 C -0.146 4.146 17 H 0.123 0.877 18 C -0.168 4.168 19 C -0.024 4.024 20 N -0.391 5.391 21 C 0.310 3.690 22 O -0.404 6.404 23 C -0.066 4.066 24 C -0.072 4.072 25 H 0.070 0.930 26 H 0.047 0.953 27 H 0.009 0.991 28 H 0.046 0.954 29 H 0.103 0.897 30 H 0.056 0.944 31 H 0.089 0.911 32 H 0.051 0.949 33 H 0.098 0.902 34 H 0.092 0.908 35 H 0.097 0.903 36 H 0.113 0.887 37 H 0.101 0.899 38 H 0.097 0.903 39 H 0.092 0.908 40 H 0.247 0.753 41 H 0.057 0.943 42 H 0.087 0.913 43 H 0.089 0.911 44 H 0.048 0.952 Dipole moment (debyes) X Y Z Total from point charges 12.335 -19.104 -9.256 24.551 hybrid contribution 0.168 0.523 -0.121 0.562 sum 12.503 -18.581 -9.377 24.280 Atomic orbital electron populations 1.69966 1.06065 1.26718 1.51109 1.25000 0.94861 0.99298 0.95514 0.86501 0.79676 0.83135 0.78098 1.20671 1.19865 1.21344 1.21163 0.93440 0.89979 1.49906 0.91936 1.19699 0.90067 0.87320 0.96082 1.62273 1.28151 1.02767 1.33243 1.21982 0.95457 0.97397 0.91256 1.22297 0.96154 0.88833 0.99994 1.62166 1.25849 1.03320 1.35136 1.22134 0.94685 0.95202 0.95657 1.21460 0.97544 0.96085 0.98480 1.22021 0.99274 0.94175 0.99120 0.87658 1.22694 0.99023 0.99988 0.95142 1.22075 0.97000 0.94274 0.89051 1.46230 1.61368 1.22719 1.08824 1.20888 0.78469 0.86123 0.83504 1.90757 1.51122 1.72324 1.26239 1.22134 0.96062 0.98481 0.89918 1.22064 0.94775 0.89966 1.00401 0.92953 0.95273 0.99094 0.95435 0.89672 0.94436 0.91146 0.94916 0.90209 0.90771 0.90314 0.88717 0.89921 0.90342 0.90821 0.75305 0.94337 0.91258 0.91067 0.95216 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.05 13.29 55.43 0.74 -26.32 16 2 C 0.05 1.56 5.46 -17.82 -0.10 1.46 16 3 Si 0.90 21.77 29.54 -169.99 -5.02 16.74 16 4 H -0.28 -6.75 7.11 56.52 0.40 -6.34 16 5 H -0.27 -6.46 7.11 56.52 0.40 -6.06 16 6 H -0.29 -6.90 7.11 56.52 0.40 -6.49 16 7 C -0.51 -14.40 8.47 -34.44 -0.29 -14.69 16 8 H 0.06 1.75 7.13 -52.49 -0.37 1.38 16 9 C 0.19 5.18 4.72 -4.98 -0.02 5.16 16 10 N -0.54 -12.13 4.70 -235.91 -1.11 -13.24 16 11 C 0.07 1.36 5.43 -3.77 -0.02 1.34 16 12 C 0.06 0.89 5.41 -3.77 -0.02 0.87 16 13 N -0.54 -8.48 4.71 -234.46 -1.10 -9.58 16 14 C 0.05 0.68 4.75 -3.82 -0.02 0.66 16 15 C -0.10 -0.98 4.56 -26.73 -0.12 -1.10 16 16 C -0.12 -1.04 2.98 -90.63 -0.27 -1.31 16 17 H 0.11 0.87 8.14 -51.93 -0.42 0.45 16 18 C -0.13 -0.66 6.71 -25.10 -0.17 -0.83 16 19 C 0.10 0.48 7.78 -3.13 -0.02 0.45 16 20 N -0.74 -5.49 6.24 -59.20 -0.37 -5.86 16 21 C 0.52 5.67 7.32 -10.86 -0.08 5.59 16 22 O -0.53 -8.00 16.79 5.56 0.09 -7.91 16 23 C 0.06 1.03 5.61 -3.76 -0.02 1.01 16 24 C 0.06 1.11 5.61 -3.77 -0.02 1.08 16 25 H 0.26 7.41 8.31 -40.82 -0.34 7.07 16 26 H 0.03 0.83 8.03 -51.92 -0.42 0.42 16 27 H -0.01 -0.25 8.12 -51.93 -0.42 -0.67 16 28 H 0.03 0.57 8.14 -51.93 -0.42 0.15 16 29 H 0.09 1.81 6.79 -51.93 -0.35 1.46 16 30 H 0.04 0.63 8.14 -51.93 -0.42 0.21 16 31 H 0.07 0.96 6.34 -51.93 -0.33 0.63 16 32 H 0.03 0.44 8.12 -51.93 -0.42 0.02 16 33 H 0.08 1.17 6.50 -51.93 -0.34 0.83 16 34 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 35 H 0.08 0.73 6.49 -51.93 -0.34 0.39 16 36 H 0.09 0.38 7.90 -51.93 -0.41 -0.03 16 37 H 0.08 0.33 8.14 -51.93 -0.42 -0.09 16 38 H 0.08 0.22 8.14 -51.93 -0.42 -0.20 16 39 H 0.07 0.32 8.14 -51.93 -0.42 -0.10 16 40 H 0.41 2.52 8.96 -40.82 -0.37 2.16 16 41 H 0.04 0.66 8.14 -51.93 -0.42 0.24 16 42 H 0.07 1.05 8.07 -51.93 -0.42 0.63 16 43 H 0.07 1.35 8.07 -51.93 -0.42 0.93 16 44 H 0.03 0.59 8.14 -51.93 -0.42 0.17 16 LS Contribution 343.50 15.07 5.18 5.18 Total: -1.00 -33.47 343.50 -10.32 -43.79 By element: Atomic # 1 Polarization: 5.03 SS G_CDS: -7.54 Total: -2.51 kcal Atomic # 6 Polarization: 0.89 SS G_CDS: -1.18 Total: -0.29 kcal Atomic # 7 Polarization: -53.15 SS G_CDS: -1.85 Total: -55.00 kcal Atomic # 8 Polarization: -8.00 SS G_CDS: 0.09 Total: -7.91 kcal Atomic # 14 Polarization: 21.77 SS G_CDS: -5.02 Total: 16.74 kcal Total LS contribution 5.18 Total: 5.18 kcal Total: -33.47 -10.32 -43.79 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001119310836.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.136 kcal (2) G-P(sol) polarization free energy of solvation -33.466 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.330 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.320 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.786 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.650 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds