Wall clock time and date at job start Tue Mar 31 2020 05:26:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13607 * 1 3 3 C 1.47190 * 179.97438 * 2 1 4 4 C 1.53002 * 109.47201 * 142.43213 * 3 2 1 5 5 C 1.53000 * 109.47152 * 179.97438 * 4 3 2 6 6 N 1.46909 * 109.46839 * 179.97438 * 5 4 3 7 7 C 1.46951 * 110.99604 * 46.20534 * 6 5 4 8 8 C 1.53056 * 109.36156 * 183.18657 * 7 6 5 9 9 N 1.46952 * 109.36223 * 301.59609 * 8 7 6 10 10 C 1.46900 * 111.00072 * 183.19089 * 9 8 7 11 11 C 1.53005 * 109.47396 * 64.78718 * 10 9 8 12 12 C 1.50701 * 109.47485 * 179.97438 * 11 10 9 13 13 H 1.08002 * 119.99574 * 0.02562 * 12 11 10 14 14 C 1.37875 * 119.99973 * 180.02562 * 12 11 10 15 15 N 1.31512 * 120.00256 * 0.02562 * 14 12 11 16 16 Si 1.86806 * 119.99576 * 180.02562 * 14 12 11 17 17 H 1.48501 * 109.47176 * 60.00552 * 16 14 12 18 18 H 1.48502 * 109.46780 * 180.02562 * 16 14 12 19 19 H 1.48497 * 109.46982 * 299.99892 * 16 14 12 20 20 C 1.46955 * 110.88413 * 59.32399 * 9 8 7 21 21 H 1.08990 * 109.48833 * 60.64206 * 20 9 8 22 22 C 1.52998 * 109.49308 * 180.71478 * 20 9 8 23 23 O 1.42894 * 109.47184 * 63.40279 * 22 20 9 24 24 C 1.46961 * 110.99583 * 170.00012 * 6 5 4 25 25 H 1.09001 * 109.47428 * 22.42900 * 3 2 1 26 26 H 1.09004 * 109.47590 * 262.42861 * 3 2 1 27 27 H 1.09001 * 109.47185 * 59.99538 * 4 3 2 28 28 H 1.09000 * 109.47192 * 299.99904 * 4 3 2 29 29 H 1.08996 * 109.47186 * 60.00400 * 5 4 3 30 30 H 1.08997 * 109.47263 * 299.99586 * 5 4 3 31 31 H 1.08998 * 109.49413 * 63.21879 * 7 6 5 32 32 H 1.09005 * 109.51180 * 303.15915 * 7 6 5 33 33 H 1.09008 * 109.48673 * 181.62871 * 8 7 6 34 34 H 1.08998 * 109.48993 * 61.56811 * 8 7 6 35 35 H 1.08998 * 109.47375 * 184.78876 * 10 9 8 36 36 H 1.09005 * 109.47060 * 304.79262 * 10 9 8 37 37 H 1.09000 * 109.47448 * 300.00645 * 11 10 9 38 38 H 1.09005 * 109.46572 * 60.00245 * 11 10 9 39 39 H 0.96993 * 119.99929 * 180.02562 * 15 14 12 40 40 H 1.08998 * 109.47223 * 183.40902 * 22 20 9 41 41 H 1.09001 * 109.46355 * 303.40653 * 22 20 9 42 42 H 0.96704 * 113.99930 * 180.02562 * 23 22 20 43 43 H 1.08995 * 109.48820 * 56.84863 * 24 6 5 44 44 H 1.09000 * 109.48818 * 296.77926 * 24 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1361 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 6 3.1175 1.1443 -0.8795 5 6 4.6475 1.1453 -0.8790 6 7 5.1366 2.2430 -1.7240 7 6 4.4160 3.4908 -1.4356 8 6 4.8981 4.5871 -2.3887 9 7 6.3472 4.7700 -2.2276 10 6 6.8364 5.8677 -3.0724 11 6 6.2212 7.1871 -2.6014 12 6 6.7235 8.3133 -3.4677 13 1 7.4123 8.1084 -4.2739 14 6 6.3037 9.6050 -3.2310 15 7 5.4653 9.8545 -2.2490 16 14 6.9259 11.0009 -4.3053 17 1 6.5374 10.7503 -5.7165 18 1 6.3297 12.2815 -3.8472 19 1 8.4053 11.0805 -4.2057 20 6 7.0680 3.5223 -2.5159 21 1 6.8747 3.2202 -3.5451 22 6 8.5694 3.7434 -2.3216 23 8 8.8310 4.0607 -0.9532 24 6 6.5859 2.4260 -1.5629 25 1 2.9718 -0.9491 -0.3921 26 1 2.9713 0.1362 1.0187 27 1 2.7537 2.0940 -0.4874 28 1 2.7542 1.0088 -1.8982 29 1 5.0116 0.1957 -1.2709 30 1 5.0104 1.2811 0.1398 31 1 4.6092 3.7930 -0.4063 32 1 3.3462 3.3336 -1.5737 33 1 4.3857 5.5211 -2.1575 34 1 4.6801 4.2971 -3.4165 35 1 7.9223 5.9266 -2.9990 36 1 6.5517 5.6835 -4.1084 37 1 5.1352 7.1283 -2.6747 38 1 6.5059 7.3712 -1.5654 39 1 5.1697 10.7632 -2.0827 40 1 9.1085 2.8359 -2.5937 41 1 8.9003 4.5663 -2.9551 42 1 9.7653 4.2145 -0.7567 43 1 7.0982 1.4921 -1.7940 44 1 6.8038 2.7160 -0.5350 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001119375762.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:26:39 Heat of formation + Delta-G solvation = -15.638987 kcal Electronic energy + Delta-G solvation = -22326.834309 eV Core-core repulsion = 19086.207604 eV Total energy + Delta-G solvation = -3240.626705 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.184 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -39.56311 -37.49299 -36.57294 -35.63481 -33.67814 -32.68605 -31.29499 -29.92596 -27.61502 -26.52576 -24.81628 -23.41761 -22.83089 -20.61006 -20.26718 -19.28550 -17.91580 -17.13282 -16.51927 -16.02967 -15.70710 -15.43230 -14.69348 -14.56968 -14.47616 -14.05328 -13.93459 -13.76768 -13.35244 -13.22449 -12.97999 -12.82448 -12.47335 -12.12754 -11.92588 -11.82001 -11.68418 -11.37995 -11.14317 -11.04575 -10.91778 -10.88302 -10.74836 -10.48943 -10.23113 -9.87002 -9.56023 -9.28998 -9.08147 -8.31300 -8.26870 -7.62350 -5.97552 -3.99915 2.48814 2.53595 3.33854 3.38491 3.40383 3.61935 3.95404 4.30907 4.50320 4.54296 4.61882 4.77914 4.83700 5.04017 5.14336 5.20847 5.30800 5.33570 5.38221 5.41495 5.47817 5.55959 5.66927 5.70032 5.82508 5.84121 5.88961 5.99541 6.15664 6.24879 6.34834 6.46170 6.52622 7.01062 7.05958 7.09564 7.30977 7.56755 7.61127 7.80725 7.90019 7.94032 8.12341 8.45883 9.07181 9.63378 11.13762 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.018164 B = 0.003546 C = 0.003065 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1541.179849 B = 7894.168751 C = 9132.287914 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.441 5.441 2 C 0.207 3.793 3 C -0.024 4.024 4 C -0.123 4.123 5 C 0.058 3.942 6 N -0.543 5.543 7 C 0.052 3.948 8 C 0.056 3.944 9 N -0.524 5.524 10 C 0.061 3.939 11 C 0.030 3.970 12 C -0.522 4.522 13 H 0.052 0.948 14 C 0.059 3.941 15 N -0.893 5.893 16 Si 0.891 3.109 17 H -0.278 1.278 18 H -0.287 1.287 19 H -0.277 1.277 20 C 0.086 3.914 21 H 0.052 0.948 22 C 0.081 3.919 23 O -0.553 6.553 24 C 0.070 3.930 25 H 0.109 0.891 26 H 0.108 0.892 27 H 0.077 0.923 28 H 0.081 0.919 29 H 0.077 0.923 30 H 0.038 0.962 31 H 0.044 0.956 32 H 0.079 0.921 33 H 0.091 0.909 34 H 0.033 0.967 35 H 0.064 0.936 36 H 0.016 0.984 37 H 0.016 0.984 38 H 0.025 0.975 39 H 0.261 0.739 40 H 0.041 0.959 41 H 0.055 0.945 42 H 0.370 0.630 43 H 0.069 0.931 44 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.889 -20.161 3.181 20.614 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.118 5.118 2 C -0.111 4.111 3 C -0.065 4.065 4 C -0.162 4.162 5 C -0.070 4.070 6 N -0.267 5.267 7 C -0.076 4.076 8 C -0.072 4.072 9 N -0.249 5.249 10 C -0.066 4.066 11 C -0.007 4.007 12 C -0.561 4.561 13 H 0.070 0.930 14 C -0.143 4.143 15 N -0.532 5.532 16 Si 0.719 3.281 17 H -0.203 1.203 18 H -0.213 1.213 19 H -0.203 1.203 20 C -0.023 4.023 21 H 0.070 0.930 22 C 0.003 3.997 23 O -0.357 6.357 24 C -0.058 4.058 25 H 0.127 0.873 26 H 0.126 0.874 27 H 0.096 0.904 28 H 0.100 0.900 29 H 0.095 0.905 30 H 0.057 0.943 31 H 0.062 0.938 32 H 0.097 0.903 33 H 0.109 0.891 34 H 0.051 0.949 35 H 0.082 0.918 36 H 0.035 0.965 37 H 0.034 0.966 38 H 0.043 0.957 39 H 0.070 0.930 40 H 0.059 0.941 41 H 0.073 0.927 42 H 0.215 0.785 43 H 0.087 0.913 44 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 0.426 -20.089 3.313 20.365 hybrid contribution 1.383 0.937 -0.724 1.820 sum 1.808 -19.153 2.589 19.411 Atomic orbital electron populations 1.81253 1.13190 1.08596 1.08734 1.29245 0.95370 0.93238 0.93199 1.19277 0.81494 1.02128 1.03596 1.21731 0.95939 0.97816 1.00702 1.22054 0.93639 0.95560 0.95766 1.62255 1.04575 1.05764 1.54149 1.22323 0.97845 0.88707 0.98692 1.22187 0.89391 0.98437 0.97212 1.62222 1.02875 1.03871 1.55966 1.22399 0.99617 0.91972 0.92583 1.19064 0.95722 0.88744 0.97161 1.21150 1.27361 0.92207 1.15349 0.92979 1.24983 0.95168 0.98769 0.95341 1.69957 1.32815 1.20415 1.29994 0.86677 0.79082 0.81531 0.80791 1.20323 1.21291 1.20281 1.21673 0.92287 0.91089 0.97256 0.93017 1.22266 0.95094 0.98368 0.84002 1.86617 1.29957 1.93140 1.25975 1.22031 0.86978 0.97206 0.99543 0.87257 0.87350 0.90416 0.90046 0.90461 0.94332 0.93819 0.90280 0.89078 0.94866 0.91768 0.96531 0.96616 0.95703 0.92964 0.94099 0.92706 0.78457 0.91257 0.92771 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.44 -5.47 18.54 42.16 0.78 -4.68 16 2 C 0.21 1.81 15.43 -20.76 -0.32 1.49 16 3 C -0.02 -0.11 5.70 -29.52 -0.17 -0.28 16 4 C -0.12 -0.84 4.43 -26.73 -0.12 -0.95 16 5 C 0.06 0.46 5.28 -3.82 -0.02 0.44 16 6 N -0.54 -6.39 4.86 -234.46 -1.14 -7.53 16 7 C 0.05 0.70 4.92 -3.77 -0.02 0.69 16 8 C 0.06 0.95 5.40 -3.77 -0.02 0.93 16 9 N -0.52 -9.53 4.46 -226.49 -1.01 -10.54 16 10 C 0.06 1.28 4.65 -3.82 -0.02 1.26 16 11 C 0.03 0.79 4.87 -27.88 -0.14 0.66 16 12 C -0.52 -14.77 9.11 -34.44 -0.31 -15.08 16 13 H 0.05 1.42 7.74 -52.49 -0.41 1.02 16 14 C 0.06 1.69 5.46 -17.82 -0.10 1.59 16 15 N -0.89 -26.93 13.29 55.43 0.74 -26.19 16 16 Si 0.89 21.66 29.54 -169.99 -5.02 16.63 16 17 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 18 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 19 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 20 C 0.09 1.27 2.35 -67.65 -0.16 1.11 16 21 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 22 C 0.08 1.07 6.35 37.16 0.24 1.30 16 23 O -0.55 -7.70 12.74 -35.23 -0.45 -8.15 16 24 C 0.07 0.89 4.71 -3.76 -0.02 0.87 16 25 H 0.11 0.26 8.14 -51.93 -0.42 -0.16 16 26 H 0.11 0.32 8.14 -51.93 -0.42 -0.11 16 27 H 0.08 0.62 6.26 -51.93 -0.33 0.29 16 28 H 0.08 0.61 8.14 -51.93 -0.42 0.19 16 29 H 0.08 0.50 8.14 -51.93 -0.42 0.08 16 30 H 0.04 0.30 8.08 -51.93 -0.42 -0.12 16 31 H 0.04 0.64 8.14 -51.93 -0.42 0.21 16 32 H 0.08 0.93 6.00 -51.93 -0.31 0.62 16 33 H 0.09 1.74 6.29 -51.92 -0.33 1.41 16 34 H 0.03 0.57 8.14 -51.93 -0.42 0.14 16 35 H 0.06 1.33 5.72 -51.93 -0.30 1.03 16 36 H 0.02 0.35 8.13 -51.93 -0.42 -0.07 16 37 H 0.02 0.43 6.45 -51.93 -0.33 0.09 16 38 H 0.02 0.71 8.14 -51.93 -0.42 0.29 16 39 H 0.26 7.44 8.31 -40.82 -0.34 7.10 16 40 H 0.04 0.42 8.14 -51.93 -0.42 0.00 16 41 H 0.05 0.77 5.99 -51.93 -0.31 0.46 16 42 H 0.37 3.46 9.12 45.56 0.42 3.87 16 43 H 0.07 0.74 8.14 -51.93 -0.42 0.31 16 44 H 0.05 0.78 7.54 -51.93 -0.39 0.39 16 LS Contribution 350.46 15.07 5.28 5.28 Total: -1.00 -34.20 350.46 -8.49 -42.68 By element: Atomic # 1 Polarization: 4.97 SS G_CDS: -6.49 Total: -1.53 kcal Atomic # 6 Polarization: -4.80 SS G_CDS: -1.17 Total: -5.98 kcal Atomic # 7 Polarization: -48.31 SS G_CDS: -0.63 Total: -48.95 kcal Atomic # 8 Polarization: -7.70 SS G_CDS: -0.45 Total: -8.15 kcal Atomic # 14 Polarization: 21.66 SS G_CDS: -5.02 Total: 16.63 kcal Total LS contribution 5.28 Total: 5.28 kcal Total: -34.20 -8.49 -42.68 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001119375762.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.045 kcal (2) G-P(sol) polarization free energy of solvation -34.199 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.154 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.485 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.684 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.639 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds