Wall clock time and date at job start Tue Mar 31 2020 05:26:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13602 * 1 3 3 C 1.47202 * 179.97438 * 2 1 4 4 C 1.53006 * 109.47025 * 189.26743 * 3 2 1 5 5 C 1.53001 * 109.47047 * 179.97438 * 4 3 2 6 6 N 1.46896 * 109.46781 * 179.97438 * 5 4 3 7 7 C 1.46956 * 111.00381 * 293.95791 * 6 5 4 8 8 C 1.53058 * 109.36415 * 176.81225 * 7 6 5 9 9 N 1.46953 * 109.36357 * 58.40364 * 8 7 6 10 10 C 1.46896 * 110.99999 * 176.81011 * 9 8 7 11 11 C 1.52998 * 109.47029 * 66.04531 * 10 9 8 12 12 C 1.50706 * 109.47348 * 180.02562 * 11 10 9 13 13 H 1.08005 * 119.99758 * 359.97438 * 12 11 10 14 14 C 1.37871 * 120.00102 * 179.97438 * 12 11 10 15 15 N 1.31516 * 120.00217 * 0.02562 * 14 12 11 16 16 Si 1.86800 * 119.99766 * 179.97438 * 14 12 11 17 17 H 1.48501 * 109.47483 * 269.99808 * 16 14 12 18 18 H 1.48499 * 109.47134 * 30.00322 * 16 14 12 19 19 H 1.48507 * 109.46904 * 150.00145 * 16 14 12 20 20 C 1.46964 * 110.88144 * 300.67774 * 9 8 7 21 21 H 1.09005 * 109.48400 * 299.35565 * 20 9 8 22 22 C 1.52993 * 109.49188 * 179.29008 * 20 9 8 23 23 O 1.42906 * 109.47264 * 294.99950 * 22 20 9 24 24 C 1.46965 * 110.99883 * 170.15825 * 6 5 4 25 25 H 1.08994 * 109.47374 * 69.27225 * 3 2 1 26 26 H 1.08996 * 109.47311 * 309.26892 * 3 2 1 27 27 H 1.09004 * 109.46483 * 59.99997 * 4 3 2 28 28 H 1.08996 * 109.47198 * 300.00218 * 4 3 2 29 29 H 1.09007 * 109.46472 * 60.00629 * 5 4 3 30 30 H 1.08996 * 109.47613 * 300.00348 * 5 4 3 31 31 H 1.08996 * 109.48933 * 56.84692 * 7 6 5 32 32 H 1.09000 * 109.50585 * 296.78681 * 7 6 5 33 33 H 1.08996 * 109.48863 * 298.43287 * 8 7 6 34 34 H 1.08998 * 109.48614 * 178.36710 * 8 7 6 35 35 H 1.09000 * 109.47274 * 306.04662 * 10 9 8 36 36 H 1.09002 * 109.47154 * 186.04169 * 10 9 8 37 37 H 1.09001 * 109.47671 * 60.00253 * 11 10 9 38 38 H 1.09006 * 109.47297 * 299.99972 * 11 10 9 39 39 H 0.97001 * 119.99646 * 359.97438 * 15 14 12 40 40 H 1.09000 * 109.47391 * 54.99722 * 22 20 9 41 41 H 1.08999 * 109.47663 * 174.99705 * 22 20 9 42 42 H 0.96697 * 114.00260 * 179.97438 * 23 22 20 43 43 H 1.09002 * 109.48502 * 303.16003 * 24 6 5 44 44 H 1.08997 * 109.48428 * 63.20043 * 24 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 6 3.1174 1.4246 0.2323 5 6 4.6474 1.4252 0.2330 6 7 5.1364 2.7924 0.4554 7 6 4.7868 3.6669 -0.6728 8 6 5.2426 5.0958 -0.3675 9 7 6.6925 5.1041 -0.1281 10 6 7.1815 6.4712 0.0944 11 6 6.5943 7.0172 1.3975 12 6 7.0955 8.4200 1.6255 13 1 7.7662 8.8764 0.9124 14 6 6.6978 9.1208 2.7442 15 7 5.8816 8.5650 3.6127 16 14 7.3197 10.8594 3.0271 17 1 8.5809 10.8130 3.8096 18 1 7.5729 11.5137 1.7183 19 1 6.2993 11.6339 3.7784 20 6 7.0421 4.2295 1.0001 21 1 6.5453 4.5847 1.9030 22 6 8.5575 4.2481 1.2099 23 8 9.2030 3.6730 0.0719 24 6 6.5864 2.8008 0.6948 25 1 2.9716 -0.3629 -0.9611 26 1 2.9717 -0.6496 0.7956 27 1 2.7538 1.7882 1.1935 28 1 2.7538 2.0749 -0.5632 29 1 5.0112 1.0615 -0.7281 30 1 5.0107 0.7750 1.0287 31 1 3.7072 3.6537 -0.8222 32 1 5.2834 3.3120 -1.5758 33 1 4.7254 5.4607 0.5198 34 1 5.0104 5.7404 -1.2151 35 1 6.8749 7.1065 -0.7365 36 1 8.2694 6.4615 0.1622 37 1 6.9009 6.3820 2.2285 38 1 5.5064 7.0269 1.3298 39 1 5.5590 7.6620 3.4660 40 1 8.8942 5.2770 1.3371 41 1 8.8083 3.6711 2.1000 42 1 10.1676 3.6522 0.1357 43 1 6.8186 2.1560 1.5425 44 1 7.1035 2.4354 -0.1924 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001119375763.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:26:41 Heat of formation + Delta-G solvation = -23.385697 kcal Electronic energy + Delta-G solvation = -22587.471463 eV Core-core repulsion = 19346.508836 eV Total energy + Delta-G solvation = -3240.962627 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.184 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -39.62591 -37.49492 -36.57605 -35.75089 -33.82152 -32.82498 -31.24360 -29.73939 -27.39796 -26.45363 -24.65627 -23.16049 -22.62070 -21.59301 -20.65541 -18.76873 -17.86784 -17.12304 -16.76410 -16.09857 -15.86033 -15.53960 -14.70329 -14.54513 -14.35465 -13.83399 -13.80041 -13.63744 -13.29718 -13.16522 -13.02848 -12.91357 -12.70509 -12.18506 -11.96654 -11.77190 -11.65025 -11.45313 -11.43309 -11.00709 -10.90045 -10.82055 -10.51843 -10.40027 -10.22154 -10.11603 -9.86612 -9.56145 -8.62690 -8.33975 -8.27301 -7.55128 -6.38349 -4.08222 2.49219 2.53864 3.41171 3.45022 3.60776 3.61576 3.96389 4.35913 4.53467 4.56185 4.62680 4.82336 4.87842 5.05718 5.14199 5.21838 5.33211 5.36110 5.38250 5.44054 5.55803 5.59120 5.66552 5.75396 5.82397 5.92365 5.96815 6.00963 6.13459 6.19067 6.31967 6.36371 6.55330 6.77030 7.06547 7.08260 7.30343 7.31730 7.34822 7.60209 7.68295 7.88030 8.22113 8.43467 8.85812 9.64386 11.01711 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.017996 B = 0.003751 C = 0.003287 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1555.570278 B = 7462.974662 C = 8515.507458 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.442 5.442 2 C 0.208 3.792 3 C -0.025 4.025 4 C -0.116 4.116 5 C 0.058 3.942 6 N -0.542 5.542 7 C 0.058 3.942 8 C 0.053 3.947 9 N -0.529 5.529 10 C 0.063 3.937 11 C -0.022 4.022 12 C -0.600 4.600 13 H 0.049 0.951 14 C 0.015 3.985 15 N -0.912 5.912 16 Si 1.070 2.930 17 H -0.288 1.288 18 H -0.289 1.289 19 H -0.284 1.284 20 C 0.088 3.912 21 H 0.068 0.932 22 C 0.081 3.919 23 O -0.560 6.560 24 C 0.071 3.929 25 H 0.107 0.893 26 H 0.110 0.890 27 H 0.081 0.919 28 H 0.072 0.928 29 H 0.037 0.963 30 H 0.077 0.923 31 H 0.075 0.925 32 H 0.039 0.961 33 H 0.048 0.952 34 H 0.074 0.926 35 H 0.062 0.938 36 H 0.066 0.934 37 H 0.008 0.992 38 H 0.008 0.992 39 H 0.268 0.732 40 H 0.061 0.939 41 H 0.043 0.957 42 H 0.369 0.631 43 H 0.070 0.930 44 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.105 -16.616 -7.163 18.216 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.119 5.119 2 C -0.110 4.110 3 C -0.065 4.065 4 C -0.155 4.155 5 C -0.070 4.070 6 N -0.266 5.266 7 C -0.070 4.070 8 C -0.075 4.075 9 N -0.253 5.253 10 C -0.064 4.064 11 C -0.060 4.060 12 C -0.639 4.639 13 H 0.067 0.933 14 C -0.189 4.189 15 N -0.548 5.548 16 Si 0.899 3.101 17 H -0.215 1.215 18 H -0.215 1.215 19 H -0.210 1.210 20 C -0.021 4.021 21 H 0.085 0.915 22 C 0.002 3.998 23 O -0.364 6.364 24 C -0.057 4.057 25 H 0.125 0.875 26 H 0.128 0.872 27 H 0.100 0.900 28 H 0.091 0.909 29 H 0.055 0.945 30 H 0.096 0.904 31 H 0.094 0.906 32 H 0.058 0.942 33 H 0.066 0.934 34 H 0.092 0.908 35 H 0.080 0.920 36 H 0.084 0.916 37 H 0.026 0.974 38 H 0.027 0.973 39 H 0.078 0.922 40 H 0.079 0.921 41 H 0.061 0.939 42 H 0.214 0.786 43 H 0.089 0.911 44 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -0.309 -15.401 -6.341 16.658 hybrid contribution 1.081 -1.105 -0.749 1.718 sum 0.773 -16.505 -7.090 17.980 Atomic orbital electron populations 1.81247 1.13200 1.08479 1.08932 1.29250 0.95373 0.93231 0.93134 1.19281 0.81476 1.00234 1.05526 1.21583 0.95825 0.93944 1.04188 1.22018 0.93985 0.90525 1.00459 1.62090 1.14605 1.08660 1.41275 1.22223 0.99919 0.93214 0.91629 1.22110 0.89083 0.95192 1.01133 1.62524 1.12520 1.10810 1.39433 1.22216 0.99474 0.86010 0.98726 1.19793 0.96036 0.96985 0.93159 1.21993 1.31947 0.99742 1.10239 0.93304 1.25842 0.95035 1.05142 0.92879 1.70761 1.30702 1.16601 1.36721 0.83525 0.76106 0.74860 0.75635 1.21489 1.21472 1.21011 1.21662 0.93310 0.92777 0.94387 0.91477 1.22276 0.92454 0.97852 0.87199 1.86556 1.22828 1.84322 1.42695 1.22043 0.86282 0.96545 1.00804 0.87451 0.87241 0.89983 0.90893 0.94471 0.90440 0.90639 0.94245 0.93408 0.90754 0.91986 0.91585 0.97363 0.97340 0.92152 0.92104 0.93930 0.78625 0.91126 0.93081 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.44 -5.57 18.54 42.15 0.78 -4.79 16 2 C 0.21 1.87 15.43 -20.76 -0.32 1.55 16 3 C -0.02 -0.12 5.70 -29.51 -0.17 -0.29 16 4 C -0.12 -0.85 5.10 -26.73 -0.14 -0.99 16 5 C 0.06 0.50 4.96 -3.83 -0.02 0.48 16 6 N -0.54 -6.84 4.71 -234.46 -1.10 -7.94 16 7 C 0.06 0.77 5.41 -3.76 -0.02 0.75 16 8 C 0.05 0.89 5.27 -3.77 -0.02 0.87 16 9 N -0.53 -9.46 4.68 -226.50 -1.06 -10.52 16 10 C 0.06 1.30 4.78 -3.83 -0.02 1.29 16 11 C -0.02 -0.54 3.57 -27.88 -0.10 -0.64 16 12 C -0.60 -16.85 9.11 -34.44 -0.31 -17.16 16 13 H 0.05 1.35 7.74 -52.48 -0.41 0.95 16 14 C 0.01 0.43 5.46 -17.82 -0.10 0.33 16 15 N -0.91 -27.80 13.65 55.43 0.76 -27.04 16 16 Si 1.07 25.21 29.90 -169.99 -5.08 20.13 16 17 H -0.29 -6.52 7.11 56.52 0.40 -6.11 16 18 H -0.29 -6.47 7.11 56.52 0.40 -6.07 16 19 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 20 C 0.09 1.45 1.80 -67.66 -0.12 1.33 16 21 H 0.07 1.29 6.45 -51.93 -0.33 0.96 16 22 C 0.08 1.22 6.38 37.15 0.24 1.45 16 23 O -0.56 -7.76 12.70 -35.23 -0.45 -8.21 16 24 C 0.07 0.97 4.72 -3.76 -0.02 0.95 16 25 H 0.11 0.31 8.14 -51.93 -0.42 -0.11 16 26 H 0.11 0.32 8.14 -51.93 -0.42 -0.11 16 27 H 0.08 0.71 8.14 -51.93 -0.42 0.29 16 28 H 0.07 0.58 6.49 -51.93 -0.34 0.25 16 29 H 0.04 0.29 8.12 -51.92 -0.42 -0.13 16 30 H 0.08 0.57 8.03 -51.93 -0.42 0.15 16 31 H 0.08 0.87 6.33 -51.93 -0.33 0.55 16 32 H 0.04 0.52 8.14 -51.93 -0.42 0.10 16 33 H 0.05 0.91 6.63 -51.93 -0.34 0.57 16 34 H 0.07 1.20 8.11 -51.93 -0.42 0.78 16 35 H 0.06 1.31 8.10 -51.93 -0.42 0.89 16 36 H 0.07 1.38 6.27 -51.93 -0.33 1.05 16 37 H 0.01 0.21 6.30 -51.93 -0.33 -0.11 16 38 H 0.01 0.23 6.49 -51.93 -0.34 -0.11 16 39 H 0.27 8.18 7.22 -40.82 -0.29 7.89 16 40 H 0.06 1.04 6.13 -51.93 -0.32 0.72 16 41 H 0.04 0.56 8.14 -51.93 -0.42 0.13 16 42 H 0.37 3.42 9.12 45.56 0.42 3.83 16 43 H 0.07 0.86 8.07 -51.93 -0.42 0.44 16 44 H 0.05 0.74 7.51 -51.93 -0.39 0.35 16 LS Contribution 347.01 15.07 5.23 5.23 Total: -1.00 -34.00 347.01 -8.38 -42.38 By element: Atomic # 1 Polarization: 7.19 SS G_CDS: -6.34 Total: 0.85 kcal Atomic # 6 Polarization: -8.96 SS G_CDS: -1.12 Total: -10.08 kcal Atomic # 7 Polarization: -49.67 SS G_CDS: -0.63 Total: -50.30 kcal Atomic # 8 Polarization: -7.76 SS G_CDS: -0.45 Total: -8.21 kcal Atomic # 14 Polarization: 25.21 SS G_CDS: -5.08 Total: 20.13 kcal Total LS contribution 5.23 Total: 5.23 kcal Total: -34.00 -8.38 -42.38 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001119375763.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.990 kcal (2) G-P(sol) polarization free energy of solvation -33.995 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.005 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.381 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.376 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.386 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds