Wall clock time and date at job start Tue Mar 31 2020 05:21:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31625 * 1 3 3 Si 1.86800 * 119.99877 * 2 1 4 4 H 1.48500 * 109.47361 * 240.00381 * 3 2 1 5 5 H 1.48502 * 109.47506 * 0.02562 * 3 2 1 6 6 H 1.48501 * 109.47268 * 120.00206 * 3 2 1 7 7 C 1.38810 * 120.00337 * 180.02562 * 2 1 3 8 8 H 1.07996 * 120.00301 * 180.02562 * 7 2 1 9 9 N 1.36941 * 119.99502 * 359.97438 * 7 2 1 10 10 C 1.46499 * 119.99558 * 180.02562 * 9 7 2 11 11 C 1.53004 * 109.46896 * 180.02562 * 10 9 7 12 12 N 1.46502 * 109.47216 * 180.02562 * 11 10 9 13 13 C 1.34777 * 120.00181 * 179.97438 * 12 11 10 14 14 O 1.21279 * 119.99789 * 359.97438 * 13 12 11 15 15 C 1.50697 * 120.00029 * 179.97438 * 13 12 11 16 16 H 1.09003 * 110.30082 * 302.15987 * 15 13 12 17 17 C 1.55326 * 110.33602 * 180.02562 * 15 13 12 18 18 C 1.53925 * 102.08313 * 218.92626 * 17 15 13 19 19 H 1.09000 * 111.00368 * 280.63557 * 18 17 15 20 20 C 1.52369 * 113.26729 * 155.07286 * 18 17 15 21 21 C 1.53640 * 107.60036 * 184.33679 * 20 18 17 22 22 C 1.52827 * 110.60812 * 56.40814 * 21 20 18 23 23 C 1.53637 * 110.64633 * 306.13180 * 22 21 20 24 24 N 1.45536 * 107.85519 * 57.13510 * 23 22 21 25 25 C 1.46843 * 117.89478 * 174.29897 * 24 23 22 26 26 H 0.96994 * 119.99607 * 359.97438 * 1 2 3 27 27 H 0.97003 * 120.00243 * 0.02562 * 9 7 2 28 28 H 1.08997 * 109.47120 * 60.00888 * 10 9 7 29 29 H 1.09003 * 109.47415 * 299.99916 * 10 9 7 30 30 H 1.08991 * 109.47310 * 59.99675 * 11 10 9 31 31 H 1.09010 * 109.46979 * 299.99757 * 11 10 9 32 32 H 0.97003 * 119.99879 * 359.97438 * 12 11 10 33 33 H 1.08996 * 110.91288 * 100.72775 * 17 15 13 34 34 H 1.09004 * 110.91024 * 337.11557 * 17 15 13 35 35 H 1.08998 * 109.83340 * 64.81909 * 20 18 17 36 36 H 1.08994 * 109.88715 * 303.89351 * 20 18 17 37 37 H 1.09000 * 109.24631 * 296.11926 * 21 20 18 38 38 H 1.08998 * 109.24758 * 176.69742 * 21 20 18 39 39 H 1.08997 * 109.24017 * 185.83623 * 22 21 20 40 40 H 1.08994 * 109.24307 * 66.43622 * 22 21 20 41 41 H 1.09006 * 109.78268 * 176.71923 * 23 22 21 42 42 H 1.08990 * 109.78785 * 297.54565 * 23 22 21 43 43 H 1.09008 * 109.48265 * 32.15986 * 25 24 23 44 44 H 1.08999 * 110.52389 * 270.68099 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.1039 1.6965 -1.2125 5 1 1.2853 2.7465 0.0006 6 1 3.1040 1.6965 1.2125 7 6 2.0104 -1.2021 -0.0005 8 1 3.0903 -1.2021 -0.0001 9 7 1.3256 -2.3880 -0.0005 10 6 2.0582 -3.6567 -0.0005 11 6 1.0639 -4.8196 -0.0012 12 7 1.7964 -6.0884 -0.0006 13 6 1.1226 -7.2556 -0.0005 14 8 -0.0902 -7.2556 -0.0004 15 6 1.8761 -8.5607 -0.0004 16 1 2.5364 -8.6162 -0.8659 17 6 0.8847 -9.7564 -0.0009 18 6 1.5801 -10.7520 0.9449 19 1 2.3814 -11.2838 0.4318 20 6 0.6152 -11.7283 1.6062 21 6 1.4232 -12.5812 2.5963 22 6 2.1489 -11.6916 3.6051 23 6 3.0011 -10.6370 2.8827 24 7 2.1206 -9.8709 2.0132 25 6 2.6872 -8.7135 1.3092 26 1 -0.4849 0.8400 0.0004 27 1 0.3556 -2.3880 -0.0005 28 1 2.6847 -3.7145 0.8895 29 1 2.6849 -3.7145 -0.8905 30 1 0.4376 -4.7617 -0.8913 31 1 0.4369 -4.7621 0.8887 32 1 2.7665 -6.0884 -0.0002 33 1 0.7826 -10.1767 -1.0014 34 1 -0.0859 -9.4572 0.3948 35 1 0.1618 -12.3694 0.8502 36 1 -0.1610 -11.1790 2.1389 37 1 2.1554 -13.1727 2.0467 38 1 0.7475 -13.2508 3.1284 39 1 2.7947 -12.3092 4.2292 40 1 1.4146 -11.1900 4.2352 41 1 3.4658 -9.9747 3.6132 42 1 3.7705 -11.1288 2.2876 43 1 3.7360 -8.9043 1.0813 44 1 2.5931 -7.8133 1.9164 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001127255635.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:21:14 Heat of formation + Delta-G solvation = -30.961102 kcal Electronic energy + Delta-G solvation = -21957.914827 eV Core-core repulsion = 18716.623706 eV Total energy + Delta-G solvation = -3241.291122 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.184 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.61298 -38.99333 -35.73980 -35.05470 -33.82100 -32.47795 -31.30362 -29.95407 -27.75263 -27.30871 -24.18583 -23.23420 -22.33940 -21.63393 -21.36450 -20.16708 -19.66779 -17.36495 -16.95774 -16.27883 -15.93764 -15.51353 -15.12744 -14.64888 -14.64313 -14.54005 -13.90064 -13.74800 -13.52607 -13.19105 -13.07479 -12.91198 -12.73733 -12.51596 -11.97242 -11.77106 -11.50134 -11.27148 -11.09449 -11.06670 -10.92849 -10.81807 -10.79207 -10.64444 -10.58019 -10.14819 -9.83717 -9.61908 -8.96884 -8.79988 -8.55067 -6.98978 -5.78945 -3.09781 2.74399 3.27412 3.43008 3.47378 3.48786 3.60342 4.19176 4.33489 4.56934 4.59498 4.67318 4.70433 4.76172 4.97325 5.01044 5.15626 5.19452 5.20757 5.28663 5.45912 5.50760 5.50916 5.53015 5.59589 5.66242 5.68655 5.74767 5.80162 5.85984 5.87792 5.97797 6.07897 6.16002 6.18539 6.51547 6.69326 6.71756 6.77478 6.98271 7.64994 7.65875 8.36179 8.39248 9.49793 10.04813 10.39540 11.43605 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.039803 B = 0.002604 C = 0.002532 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 703.292756 B =10751.467899 C =11054.402108 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.931 5.931 2 C -0.012 4.012 3 Si 0.911 3.089 4 H -0.285 1.285 5 H -0.290 1.290 6 H -0.285 1.285 7 C -0.245 4.245 8 H 0.071 0.929 9 N -0.730 5.730 10 C 0.145 3.855 11 C 0.111 3.889 12 N -0.724 5.724 13 C 0.521 3.479 14 O -0.536 6.536 15 C -0.119 4.119 16 H 0.101 0.899 17 C -0.101 4.101 18 C 0.067 3.933 19 H 0.052 0.948 20 C -0.106 4.106 21 C -0.120 4.120 22 C -0.115 4.115 23 C 0.063 3.937 24 N -0.538 5.538 25 C 0.063 3.937 26 H 0.257 0.743 27 H 0.386 0.614 28 H 0.024 0.976 29 H 0.023 0.977 30 H 0.068 0.932 31 H 0.069 0.931 32 H 0.398 0.602 33 H 0.074 0.926 34 H 0.098 0.902 35 H 0.066 0.934 36 H 0.076 0.924 37 H 0.055 0.945 38 H 0.063 0.937 39 H 0.064 0.936 40 H 0.071 0.929 41 H 0.074 0.926 42 H 0.031 0.969 43 H 0.047 0.953 44 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.961 -26.953 3.082 28.007 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.579 5.579 2 C -0.208 4.208 3 Si 0.741 3.259 4 H -0.212 1.212 5 H -0.216 1.216 6 H -0.212 1.212 7 C -0.376 4.376 8 H 0.089 0.911 9 N -0.375 5.375 10 C 0.017 3.983 11 C -0.013 4.013 12 N -0.375 5.375 13 C 0.306 3.694 14 O -0.412 6.412 15 C -0.141 4.141 16 H 0.119 0.881 17 C -0.139 4.139 18 C -0.041 4.041 19 H 0.070 0.930 20 C -0.144 4.144 21 C -0.157 4.157 22 C -0.153 4.153 23 C -0.065 4.065 24 N -0.263 5.263 25 C -0.065 4.065 26 H 0.067 0.933 27 H 0.220 0.780 28 H 0.042 0.958 29 H 0.041 0.959 30 H 0.087 0.913 31 H 0.087 0.913 32 H 0.232 0.768 33 H 0.093 0.907 34 H 0.116 0.884 35 H 0.085 0.915 36 H 0.095 0.905 37 H 0.074 0.926 38 H 0.081 0.919 39 H 0.083 0.917 40 H 0.089 0.911 41 H 0.093 0.907 42 H 0.050 0.950 43 H 0.065 0.935 44 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges 5.855 -26.609 3.438 27.462 hybrid contribution 1.469 0.775 -0.497 1.733 sum 7.324 -25.834 2.941 27.013 Atomic orbital electron populations 1.69660 1.05152 1.25971 1.57116 1.24785 0.95569 0.97824 1.02668 0.86220 0.78490 0.83303 0.77851 1.21195 1.21601 1.21193 1.19145 0.90990 0.83885 1.43545 0.91104 1.42190 1.06015 0.99574 1.89696 1.20751 0.93499 0.85725 0.98328 1.21574 0.95432 0.81742 1.02538 1.45942 1.10329 1.06032 1.75180 1.20263 0.88101 0.85005 0.76010 1.90695 1.13941 1.87372 1.49211 1.22432 0.98413 0.94045 0.99200 0.88080 1.22367 0.99658 0.92548 0.99321 1.22583 0.96739 0.93539 0.91235 0.92969 1.21523 0.97864 0.96873 0.98148 1.21574 0.99045 0.97759 0.97366 1.21591 0.99206 0.96552 0.97925 1.21931 0.93562 0.95144 0.95868 1.62652 1.37057 1.07361 1.19255 1.22509 0.95878 0.95040 0.93064 0.93295 0.77989 0.95846 0.95879 0.91339 0.91299 0.76797 0.90686 0.88363 0.91524 0.90520 0.92588 0.91851 0.91732 0.91055 0.90708 0.95038 0.93511 0.89689 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -28.48 13.06 55.49 0.72 -27.75 16 2 C -0.01 -0.35 5.50 -17.43 -0.10 -0.44 16 3 Si 0.91 22.40 29.55 -169.99 -5.02 17.37 16 4 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 5 H -0.29 -7.18 7.11 56.52 0.40 -6.78 16 6 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 7 C -0.24 -6.88 9.99 -15.06 -0.15 -7.03 16 8 H 0.07 1.90 7.83 -52.49 -0.41 1.49 16 9 N -0.73 -18.73 5.60 -59.91 -0.34 -19.07 16 10 C 0.15 2.86 6.37 -4.04 -0.03 2.84 16 11 C 0.11 1.93 5.79 -4.04 -0.02 1.91 16 12 N -0.72 -9.89 5.50 -60.29 -0.33 -10.22 16 13 C 0.52 7.43 6.94 -10.99 -0.08 7.35 16 14 O -0.54 -9.91 15.44 5.56 0.09 -9.82 16 15 C -0.12 -1.22 3.41 -89.59 -0.31 -1.52 16 16 H 0.10 0.81 8.14 -51.93 -0.42 0.39 16 17 C -0.10 -1.03 5.96 -25.02 -0.15 -1.18 16 18 C 0.07 0.59 2.60 -66.58 -0.17 0.42 16 19 H 0.05 0.43 8.05 -51.93 -0.42 0.01 16 20 C -0.11 -0.86 5.68 -26.72 -0.15 -1.01 16 21 C -0.12 -0.83 5.94 -26.49 -0.16 -0.99 16 22 C -0.11 -0.84 6.06 -26.49 -0.16 -1.00 16 23 C 0.06 0.51 5.89 -4.23 -0.02 0.49 16 24 N -0.54 -5.29 4.66 -224.63 -1.05 -6.34 16 25 C 0.06 0.60 6.54 -2.91 -0.02 0.58 16 26 H 0.26 7.59 8.31 -40.82 -0.34 7.25 16 27 H 0.39 10.51 7.67 -40.82 -0.31 10.20 16 28 H 0.02 0.46 8.14 -51.93 -0.42 0.03 16 29 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 30 H 0.07 1.28 8.14 -51.93 -0.42 0.86 16 31 H 0.07 1.30 8.14 -51.92 -0.42 0.88 16 32 H 0.40 4.26 8.47 -40.82 -0.35 3.92 16 33 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 34 H 0.10 1.27 6.88 -51.93 -0.36 0.91 16 35 H 0.07 0.47 8.14 -51.93 -0.42 0.04 16 36 H 0.08 0.73 8.14 -51.93 -0.42 0.31 16 37 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 38 H 0.06 0.40 8.14 -51.93 -0.42 -0.03 16 39 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 40 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 41 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 42 H 0.03 0.24 8.04 -51.93 -0.42 -0.18 16 43 H 0.05 0.36 8.04 -51.92 -0.42 -0.05 16 44 H 0.08 0.90 7.68 -51.93 -0.40 0.50 16 LS Contribution 348.62 15.07 5.25 5.25 Total: -1.00 -32.96 348.62 -9.90 -42.86 By element: Atomic # 1 Polarization: 15.02 SS G_CDS: -7.71 Total: 7.31 kcal Atomic # 6 Polarization: 1.92 SS G_CDS: -1.51 Total: 0.41 kcal Atomic # 7 Polarization: -62.39 SS G_CDS: -0.99 Total: -63.38 kcal Atomic # 8 Polarization: -9.91 SS G_CDS: 0.09 Total: -9.82 kcal Atomic # 14 Polarization: 22.40 SS G_CDS: -5.02 Total: 17.37 kcal Total LS contribution 5.25 Total: 5.25 kcal Total: -32.96 -9.90 -42.86 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001127255635.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.898 kcal (2) G-P(sol) polarization free energy of solvation -32.963 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.066 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.895 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.859 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.961 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds