Wall clock time and date at job start Tue Mar 31 2020 05:21:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86806 * 119.99847 * 2 1 4 4 H 1.48500 * 109.47039 * 239.99773 * 3 2 1 5 5 H 1.48504 * 109.46894 * 359.97438 * 3 2 1 6 6 H 1.48499 * 109.47252 * 119.99724 * 3 2 1 7 7 C 1.38809 * 120.00358 * 179.97438 * 2 1 3 8 8 H 1.07996 * 120.00507 * 179.97438 * 7 2 1 9 9 N 1.36944 * 119.99892 * 0.02562 * 7 2 1 10 10 C 1.46497 * 120.00211 * 179.97438 * 9 7 2 11 11 C 1.53000 * 109.47143 * 180.02562 * 10 9 7 12 12 N 1.46498 * 109.46753 * 179.97438 * 11 10 9 13 13 C 1.34782 * 119.99660 * 179.97438 * 12 11 10 14 14 O 1.21282 * 119.99980 * 0.02562 * 13 12 11 15 15 C 1.50696 * 119.99985 * 179.97438 * 13 12 11 16 16 H 1.09002 * 110.31102 * 60.74082 * 15 13 12 17 17 C 1.54993 * 110.43997 * 182.98637 * 15 13 12 18 18 C 1.53272 * 104.18648 * 116.41917 * 17 15 13 19 19 H 1.08991 * 110.29319 * 269.70829 * 18 17 15 20 20 C 1.52246 * 113.89828 * 145.10272 * 18 17 15 21 21 C 1.54659 * 107.42156 * 183.64976 * 20 18 17 22 22 C 1.52818 * 111.28111 * 54.94677 * 21 20 18 23 23 C 1.53623 * 110.69925 * 306.73284 * 22 21 20 24 24 N 1.45665 * 107.80264 * 57.37496 * 23 22 21 25 25 C 1.47095 * 116.54061 * 177.31155 * 24 23 22 26 26 H 0.96997 * 120.00309 * 0.02562 * 1 2 3 27 27 H 0.97000 * 119.99709 * 359.97438 * 9 7 2 28 28 H 1.09001 * 109.46855 * 59.99680 * 10 9 7 29 29 H 1.09005 * 109.46892 * 300.00098 * 10 9 7 30 30 H 1.08994 * 109.47156 * 59.99628 * 11 10 9 31 31 H 1.09000 * 109.46679 * 299.99575 * 11 10 9 32 32 H 0.97000 * 120.00470 * 359.97438 * 12 11 10 33 33 H 1.08997 * 110.49189 * 235.09597 * 17 15 13 34 34 H 1.09003 * 110.48503 * 357.61828 * 17 15 13 35 35 H 1.08997 * 109.84153 * 302.27620 * 20 18 17 36 36 H 1.08999 * 109.84318 * 63.24702 * 20 18 17 37 37 H 1.09008 * 108.51999 * 294.71080 * 21 20 18 38 38 H 1.08993 * 109.29400 * 175.69488 * 21 20 18 39 39 H 1.09006 * 109.23108 * 186.41931 * 22 21 20 40 40 H 1.08998 * 109.19737 * 67.02359 * 22 21 20 41 41 H 1.09001 * 109.79531 * 297.80022 * 23 22 21 42 42 H 1.09001 * 109.84142 * 176.97894 * 23 22 21 43 43 H 1.09002 * 110.61296 * 43.92274 * 25 24 23 44 44 H 1.08997 * 110.61423 * 281.09621 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.1040 1.6965 -1.2125 5 1 1.2851 2.7465 -0.0006 6 1 3.1039 1.6966 1.2125 7 6 2.0103 -1.2021 0.0005 8 1 3.0903 -1.2021 0.0001 9 7 1.3257 -2.3881 0.0005 10 6 2.0582 -3.6568 0.0005 11 6 1.0639 -4.8197 -0.0001 12 7 1.7965 -6.0884 -0.0007 13 6 1.1226 -7.2556 -0.0008 14 8 -0.0902 -7.2556 -0.0009 15 6 1.8761 -8.5607 -0.0021 16 1 2.4986 -8.6390 0.8893 17 6 0.8907 -9.7546 -0.0776 18 6 1.2204 -10.4298 -1.4135 19 1 0.6128 -10.0046 -2.2121 20 6 1.0761 -11.9453 -1.3907 21 6 1.5304 -12.4744 -2.7712 22 6 2.9416 -11.9968 -3.1113 23 6 3.0423 -10.4689 -2.9873 24 7 2.6598 -10.1060 -1.6295 25 6 2.7473 -8.6796 -1.2809 26 1 -0.4850 0.8400 -0.0004 27 1 0.3557 -2.3881 0.0005 28 1 2.6848 -3.7144 0.8905 29 1 2.6848 -3.7145 -0.8895 30 1 0.4376 -4.7617 -0.8902 31 1 0.4370 -4.7621 0.8897 32 1 2.7665 -6.0884 -0.0011 33 1 1.0611 -10.4430 0.7501 34 1 -0.1399 -9.3996 -0.0715 35 1 1.7180 -12.3664 -0.6171 36 1 0.0377 -12.2152 -1.1984 37 1 0.8355 -12.1096 -3.5276 38 1 1.5120 -13.5642 -2.7629 39 1 3.1838 -12.2909 -4.1326 40 1 3.6516 -12.4601 -2.4263 41 1 2.3670 -9.9954 -3.7000 42 1 4.0662 -10.1487 -3.1804 43 1 2.3394 -8.0631 -2.0819 44 1 3.7791 -8.3988 -1.0697 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001127255640.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:21:19 Heat of formation + Delta-G solvation = -31.847193 kcal Electronic energy + Delta-G solvation = -21956.470189 eV Core-core repulsion = 18715.140644 eV Total energy + Delta-G solvation = -3241.329545 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.184 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.65465 -39.01280 -35.77666 -35.02848 -33.85860 -32.48824 -31.32421 -29.95252 -27.75838 -27.29201 -24.20766 -23.24791 -22.34346 -21.67263 -21.39578 -20.16915 -19.63178 -17.43789 -17.11793 -16.15895 -15.74992 -15.49794 -15.04632 -14.87324 -14.67248 -14.55557 -14.14039 -13.70426 -13.44030 -13.22700 -13.17966 -12.90534 -12.81208 -12.60229 -11.91858 -11.62210 -11.44234 -11.37158 -11.11779 -11.01835 -10.87071 -10.82925 -10.80281 -10.67214 -10.60213 -10.16331 -9.87340 -9.67545 -9.00006 -8.84704 -8.70661 -7.00986 -5.80669 -3.11638 2.67472 3.21107 3.41900 3.46155 3.47599 3.70124 4.19843 4.32585 4.56053 4.59671 4.68040 4.69113 4.75395 4.90782 5.05308 5.15979 5.22579 5.22748 5.35067 5.46221 5.47996 5.48828 5.54505 5.60226 5.63098 5.68445 5.76000 5.78373 5.81971 5.93436 5.94430 5.99151 6.08937 6.14324 6.47949 6.59993 6.68812 6.73279 6.89365 7.60307 7.64108 8.30180 8.37082 9.48036 10.02758 10.37449 11.41855 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.040117 B = 0.002603 C = 0.002518 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 697.785256 B =10752.680791 C =11116.081345 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.931 5.931 2 C -0.012 4.012 3 Si 0.911 3.089 4 H -0.285 1.285 5 H -0.290 1.290 6 H -0.285 1.285 7 C -0.245 4.245 8 H 0.071 0.929 9 N -0.730 5.730 10 C 0.145 3.855 11 C 0.110 3.890 12 N -0.721 5.721 13 C 0.515 3.485 14 O -0.539 6.539 15 C -0.111 4.111 16 H 0.107 0.893 17 C -0.107 4.107 18 C 0.061 3.939 19 H 0.052 0.948 20 C -0.105 4.105 21 C -0.121 4.121 22 C -0.112 4.112 23 C 0.053 3.947 24 N -0.522 5.522 25 C 0.053 3.947 26 H 0.257 0.743 27 H 0.386 0.614 28 H 0.024 0.976 29 H 0.024 0.976 30 H 0.068 0.932 31 H 0.069 0.931 32 H 0.400 0.600 33 H 0.077 0.923 34 H 0.094 0.906 35 H 0.072 0.928 36 H 0.069 0.931 37 H 0.056 0.944 38 H 0.063 0.937 39 H 0.065 0.935 40 H 0.070 0.930 41 H 0.034 0.966 42 H 0.076 0.924 43 H 0.047 0.953 44 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.473 -26.289 -3.883 27.351 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.579 5.579 2 C -0.208 4.208 3 Si 0.741 3.259 4 H -0.212 1.212 5 H -0.216 1.216 6 H -0.212 1.212 7 C -0.376 4.376 8 H 0.089 0.911 9 N -0.375 5.375 10 C 0.017 3.983 11 C -0.014 4.014 12 N -0.372 5.372 13 C 0.300 3.700 14 O -0.416 6.416 15 C -0.133 4.133 16 H 0.125 0.875 17 C -0.145 4.145 18 C -0.047 4.047 19 H 0.070 0.930 20 C -0.143 4.143 21 C -0.159 4.159 22 C -0.150 4.150 23 C -0.075 4.075 24 N -0.247 5.247 25 C -0.075 4.075 26 H 0.067 0.933 27 H 0.220 0.780 28 H 0.042 0.958 29 H 0.041 0.959 30 H 0.086 0.914 31 H 0.087 0.913 32 H 0.234 0.766 33 H 0.096 0.904 34 H 0.113 0.887 35 H 0.091 0.909 36 H 0.088 0.912 37 H 0.074 0.926 38 H 0.082 0.918 39 H 0.083 0.917 40 H 0.088 0.912 41 H 0.052 0.948 42 H 0.094 0.906 43 H 0.065 0.935 44 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges 6.081 -26.415 -3.595 27.343 hybrid contribution 0.224 1.553 -0.605 1.682 sum 6.305 -24.862 -4.200 25.990 Atomic orbital electron populations 1.69656 1.05163 1.25994 1.57098 1.24786 0.95570 0.97840 1.02631 0.86218 0.78494 0.83272 0.77872 1.21188 1.21595 1.21158 1.19147 0.91002 0.83866 1.43588 0.91082 1.42189 1.06003 0.99576 1.89717 1.20752 0.93480 0.85694 0.98385 1.21585 0.95467 0.81796 1.02518 1.45944 1.10422 1.05988 1.74860 1.20447 0.88157 0.85338 0.76037 1.90685 1.14007 1.87332 1.49611 1.22295 0.97745 0.92982 1.00312 0.87456 1.22189 1.00412 0.94946 0.96942 1.22516 0.88649 0.96080 0.97424 0.93009 1.21662 1.01200 0.93760 0.97629 1.21747 0.96565 1.00400 0.97206 1.21549 0.97449 0.94715 1.01313 1.22037 1.00724 0.96213 0.88570 1.64001 1.19226 1.16471 1.25011 1.22766 1.00102 0.89228 0.95444 0.93286 0.78008 0.95778 0.95869 0.91390 0.91260 0.76645 0.90425 0.88723 0.90884 0.91235 0.92559 0.91821 0.91662 0.91165 0.94761 0.90580 0.93501 0.89296 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -28.37 13.06 55.49 0.72 -27.65 16 2 C -0.01 -0.34 5.50 -17.43 -0.10 -0.44 16 3 Si 0.91 22.32 29.55 -169.99 -5.02 17.30 16 4 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 5 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16 6 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 7 C -0.25 -6.86 9.99 -15.06 -0.15 -7.02 16 8 H 0.07 1.90 7.83 -52.49 -0.41 1.49 16 9 N -0.73 -18.63 5.60 -59.91 -0.34 -18.97 16 10 C 0.15 2.84 6.37 -4.04 -0.03 2.81 16 11 C 0.11 1.90 5.79 -4.04 -0.02 1.87 16 12 N -0.72 -9.72 5.49 -60.30 -0.33 -10.05 16 13 C 0.52 7.20 7.05 -10.98 -0.08 7.13 16 14 O -0.54 -9.74 15.28 5.56 0.08 -9.66 16 15 C -0.11 -1.14 3.48 -89.56 -0.31 -1.46 16 16 H 0.11 0.93 8.14 -51.93 -0.42 0.51 16 17 C -0.11 -1.10 6.22 -25.54 -0.16 -1.26 16 18 C 0.06 0.58 2.48 -66.73 -0.17 0.42 16 19 H 0.05 0.57 7.99 -51.93 -0.42 0.15 16 20 C -0.10 -0.82 5.75 -26.24 -0.15 -0.97 16 21 C -0.12 -0.85 5.95 -25.95 -0.15 -1.01 16 22 C -0.11 -0.78 6.08 -26.50 -0.16 -0.94 16 23 C 0.05 0.43 5.88 -4.17 -0.02 0.41 16 24 N -0.52 -4.84 4.86 -224.17 -1.09 -5.93 16 25 C 0.05 0.50 6.16 -2.55 -0.02 0.48 16 26 H 0.26 7.57 8.31 -40.82 -0.34 7.23 16 27 H 0.39 10.45 7.67 -40.82 -0.31 10.13 16 28 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 29 H 0.02 0.45 8.14 -51.93 -0.42 0.02 16 30 H 0.07 1.27 8.14 -51.93 -0.42 0.84 16 31 H 0.07 1.29 8.14 -51.93 -0.42 0.86 16 32 H 0.40 4.23 8.46 -40.82 -0.35 3.89 16 33 H 0.08 0.70 8.00 -51.93 -0.42 0.28 16 34 H 0.09 1.17 6.51 -51.93 -0.34 0.83 16 35 H 0.07 0.58 8.14 -51.93 -0.42 0.15 16 36 H 0.07 0.50 8.14 -51.93 -0.42 0.07 16 37 H 0.06 0.41 8.14 -51.92 -0.42 -0.01 16 38 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 39 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 40 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 41 H 0.03 0.30 8.00 -51.93 -0.42 -0.11 16 42 H 0.08 0.57 8.14 -51.93 -0.42 0.15 16 43 H 0.05 0.50 7.88 -51.93 -0.41 0.09 16 44 H 0.09 0.69 8.14 -51.93 -0.42 0.27 16 LS Contribution 348.36 15.07 5.25 5.25 Total: -1.00 -32.49 348.36 -9.93 -42.42 By element: Atomic # 1 Polarization: 14.94 SS G_CDS: -7.69 Total: 7.25 kcal Atomic # 6 Polarization: 1.55 SS G_CDS: -1.52 Total: 0.04 kcal Atomic # 7 Polarization: -61.57 SS G_CDS: -1.03 Total: -62.60 kcal Atomic # 8 Polarization: -9.74 SS G_CDS: 0.08 Total: -9.66 kcal Atomic # 14 Polarization: 22.32 SS G_CDS: -5.02 Total: 17.30 kcal Total LS contribution 5.25 Total: 5.25 kcal Total: -32.49 -9.93 -42.42 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001127255640.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.576 kcal (2) G-P(sol) polarization free energy of solvation -32.493 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.917 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.930 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.423 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.847 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds