Wall clock time and date at job start Tue Mar 31 2020 05:21:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86806 * 119.99847 * 2 1 4 4 H 1.48500 * 109.47039 * 239.99773 * 3 2 1 5 5 H 1.48504 * 109.46894 * 359.97438 * 3 2 1 6 6 H 1.48499 * 109.47252 * 119.99724 * 3 2 1 7 7 C 1.38809 * 120.00358 * 179.97438 * 2 1 3 8 8 H 1.07996 * 120.00507 * 179.97438 * 7 2 1 9 9 N 1.36944 * 119.99892 * 0.02562 * 7 2 1 10 10 C 1.46497 * 120.00211 * 179.97438 * 9 7 2 11 11 C 1.53000 * 109.47143 * 180.02562 * 10 9 7 12 12 N 1.46498 * 109.46753 * 179.97438 * 11 10 9 13 13 C 1.34782 * 119.99660 * 179.97438 * 12 11 10 14 14 O 1.21282 * 119.99980 * 0.02562 * 13 12 11 15 15 C 1.50696 * 119.99985 * 179.97438 * 13 12 11 16 16 H 1.09002 * 110.31102 * 60.74082 * 15 13 12 17 17 C 1.54993 * 110.43997 * 182.98637 * 15 13 12 18 18 C 1.53272 * 104.18648 * 116.41917 * 17 15 13 19 19 H 1.08991 * 110.29319 * 269.70829 * 18 17 15 20 20 C 1.52246 * 113.89828 * 145.10272 * 18 17 15 21 21 C 1.54659 * 107.42156 * 183.64976 * 20 18 17 22 22 C 1.52818 * 111.28111 * 54.94677 * 21 20 18 23 23 C 1.53623 * 110.69925 * 306.73284 * 22 21 20 24 24 N 1.45665 * 107.80264 * 57.37496 * 23 22 21 25 25 C 1.47095 * 116.54061 * 177.31155 * 24 23 22 26 26 H 0.96997 * 120.00309 * 0.02562 * 1 2 3 27 27 H 0.97000 * 119.99709 * 359.97438 * 9 7 2 28 28 H 1.09001 * 109.46855 * 59.99680 * 10 9 7 29 29 H 1.09005 * 109.46892 * 300.00098 * 10 9 7 30 30 H 1.08994 * 109.47156 * 59.99628 * 11 10 9 31 31 H 1.09000 * 109.46679 * 299.99575 * 11 10 9 32 32 H 0.97000 * 120.00470 * 359.97438 * 12 11 10 33 33 H 1.08997 * 110.49189 * 235.09597 * 17 15 13 34 34 H 1.09003 * 110.48503 * 357.61828 * 17 15 13 35 35 H 1.08997 * 109.84153 * 302.27620 * 20 18 17 36 36 H 1.08999 * 109.84318 * 63.24702 * 20 18 17 37 37 H 1.09008 * 108.51999 * 294.71080 * 21 20 18 38 38 H 1.08993 * 109.29400 * 175.69488 * 21 20 18 39 39 H 1.09006 * 109.23108 * 186.41931 * 22 21 20 40 40 H 1.08998 * 109.19737 * 67.02359 * 22 21 20 41 41 H 1.09001 * 109.79531 * 297.80022 * 23 22 21 42 42 H 1.09001 * 109.84142 * 176.97894 * 23 22 21 43 43 H 1.09002 * 110.61296 * 43.92274 * 25 24 23 44 44 H 1.08997 * 110.61423 * 281.09621 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.1040 1.6965 -1.2125 5 1 1.2851 2.7465 -0.0006 6 1 3.1039 1.6966 1.2125 7 6 2.0103 -1.2021 0.0005 8 1 3.0903 -1.2021 0.0001 9 7 1.3257 -2.3881 0.0005 10 6 2.0582 -3.6568 0.0005 11 6 1.0639 -4.8197 -0.0001 12 7 1.7965 -6.0884 -0.0007 13 6 1.1226 -7.2556 -0.0008 14 8 -0.0902 -7.2556 -0.0009 15 6 1.8761 -8.5607 -0.0021 16 1 2.4986 -8.6390 0.8893 17 6 0.8907 -9.7546 -0.0776 18 6 1.2204 -10.4298 -1.4135 19 1 0.6128 -10.0046 -2.2121 20 6 1.0761 -11.9453 -1.3907 21 6 1.5304 -12.4744 -2.7712 22 6 2.9416 -11.9968 -3.1113 23 6 3.0423 -10.4689 -2.9873 24 7 2.6598 -10.1060 -1.6295 25 6 2.7473 -8.6796 -1.2809 26 1 -0.4850 0.8400 -0.0004 27 1 0.3557 -2.3881 0.0005 28 1 2.6848 -3.7144 0.8905 29 1 2.6848 -3.7145 -0.8895 30 1 0.4376 -4.7617 -0.8902 31 1 0.4370 -4.7621 0.8897 32 1 2.7665 -6.0884 -0.0011 33 1 1.0611 -10.4430 0.7501 34 1 -0.1399 -9.3996 -0.0715 35 1 1.7180 -12.3664 -0.6171 36 1 0.0377 -12.2152 -1.1984 37 1 0.8355 -12.1096 -3.5276 38 1 1.5120 -13.5642 -2.7629 39 1 3.1838 -12.2909 -4.1326 40 1 3.6516 -12.4601 -2.4263 41 1 2.3670 -9.9954 -3.7000 42 1 4.0662 -10.1487 -3.1804 43 1 2.3394 -8.0631 -2.0819 44 1 3.7791 -8.3988 -1.0697 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001127255640.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:21:18 Heat of formation + Delta-G solvation = -55.558055 kcal Electronic energy + Delta-G solvation = -21957.498370 eV Core-core repulsion = 18715.140644 eV Total energy + Delta-G solvation = -3242.357726 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.184 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -41.57545 -40.01773 -37.36780 -35.79698 -35.52995 -33.20150 -33.17380 -30.94044 -29.19344 -28.13464 -25.81430 -24.36920 -23.28431 -22.98707 -22.35988 -20.96912 -20.58763 -19.32740 -18.31071 -17.14612 -16.86506 -16.60875 -16.40965 -16.05782 -15.88682 -15.39217 -15.15527 -15.09251 -15.02047 -14.42597 -14.40914 -13.97645 -13.55172 -13.31663 -13.08940 -13.05634 -12.67971 -12.64616 -12.50626 -12.30064 -12.19160 -12.12485 -11.87986 -11.69751 -11.53439 -11.33801 -11.21265 -10.99243 -10.95156 -10.18807 -9.46678 -9.08481 -7.98062 -5.29876 1.47607 1.51480 1.54273 1.57608 2.04977 2.56800 2.94859 3.35981 3.42135 3.57295 3.78739 3.95105 3.99402 4.01298 4.08938 4.13191 4.19461 4.24357 4.28936 4.44264 4.53668 4.55714 4.56809 4.68356 4.81306 4.81812 4.91414 4.99034 5.02813 5.07147 5.09668 5.11279 5.13714 5.25876 5.31266 5.37446 5.47428 5.48840 5.86176 6.18379 6.22505 6.50262 7.18980 7.28623 8.00335 8.23258 9.25478 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.040117 B = 0.002603 C = 0.002518 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 697.785256 B =10752.680791 C =11116.081345 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.972 5.972 2 C -0.078 4.078 3 Si 0.981 3.019 4 H -0.275 1.275 5 H -0.297 1.297 6 H -0.274 1.274 7 C -0.250 4.250 8 H 0.084 0.916 9 N -0.748 5.748 10 C 0.150 3.850 11 C 0.127 3.873 12 N -0.708 5.708 13 C 0.514 3.486 14 O -0.585 6.585 15 C -0.102 4.102 16 H 0.135 0.865 17 C -0.107 4.107 18 C 0.062 3.938 19 H 0.030 0.970 20 C -0.102 4.102 21 C -0.122 4.122 22 C -0.109 4.109 23 C 0.049 3.951 24 N -0.520 5.520 25 C 0.055 3.945 26 H 0.253 0.747 27 H 0.373 0.627 28 H 0.039 0.961 29 H 0.037 0.963 30 H 0.050 0.950 31 H 0.053 0.947 32 H 0.418 0.582 33 H 0.094 0.906 34 H 0.068 0.932 35 H 0.077 0.923 36 H 0.073 0.927 37 H 0.049 0.951 38 H 0.077 0.923 39 H 0.077 0.923 40 H 0.073 0.927 41 H 0.023 0.977 42 H 0.086 0.914 43 H 0.030 0.970 44 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.078 -27.600 -3.799 29.303 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.622 5.622 2 C -0.270 4.270 3 Si 0.809 3.191 4 H -0.201 1.201 5 H -0.223 1.223 6 H -0.200 1.200 7 C -0.381 4.381 8 H 0.101 0.899 9 N -0.391 5.391 10 C 0.023 3.977 11 C 0.002 3.998 12 N -0.360 5.360 13 C 0.301 3.699 14 O -0.465 6.465 15 C -0.123 4.123 16 H 0.153 0.847 17 C -0.146 4.146 18 C -0.046 4.046 19 H 0.048 0.952 20 C -0.140 4.140 21 C -0.159 4.159 22 C -0.147 4.147 23 C -0.079 4.079 24 N -0.244 5.244 25 C -0.074 4.074 26 H 0.061 0.939 27 H 0.205 0.795 28 H 0.057 0.943 29 H 0.055 0.945 30 H 0.068 0.932 31 H 0.071 0.929 32 H 0.255 0.745 33 H 0.113 0.887 34 H 0.087 0.913 35 H 0.096 0.904 36 H 0.091 0.909 37 H 0.068 0.932 38 H 0.096 0.904 39 H 0.096 0.904 40 H 0.091 0.909 41 H 0.041 0.959 42 H 0.105 0.895 43 H 0.049 0.951 44 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges 8.766 -27.772 -3.515 29.334 hybrid contribution -0.580 1.875 -0.647 2.066 sum 8.186 -25.897 -4.161 27.477 Atomic orbital electron populations 1.69832 1.06875 1.26410 1.59071 1.25696 0.96447 1.01551 1.03291 0.85115 0.77105 0.78532 0.78396 1.20082 1.22313 1.20019 1.19622 0.91743 0.84844 1.41893 0.89856 1.42437 1.05747 1.01146 1.89814 1.20845 0.93548 0.84025 0.99286 1.21142 0.94836 0.82886 1.00920 1.45749 1.11194 1.04606 1.74488 1.21145 0.87781 0.86375 0.74564 1.90676 1.16249 1.88001 1.51537 1.22321 0.97657 0.90320 1.02038 0.84749 1.22176 0.98994 0.95323 0.98065 1.22491 0.88709 0.97211 0.96228 0.95203 1.21658 1.01651 0.92307 0.98356 1.21763 0.96522 1.01227 0.96425 1.21543 0.97338 0.93605 1.02195 1.22142 1.00953 0.97182 0.87663 1.64071 1.18589 1.16096 1.25677 1.22814 1.00974 0.89282 0.94285 0.93873 0.79515 0.94318 0.94508 0.93208 0.92875 0.74535 0.88710 0.91299 0.90402 0.90873 0.93204 0.90433 0.90407 0.90870 0.95898 0.89545 0.95145 0.86889 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -60.26 13.06 21.65 0.28 -59.98 16 2 C -0.08 -4.47 5.50 84.86 0.47 -4.00 16 3 Si 0.98 45.74 29.55 68.60 2.03 47.77 16 4 H -0.27 -12.24 7.11 99.48 0.71 -11.53 16 5 H -0.30 -14.04 7.11 99.48 0.71 -13.33 16 6 H -0.27 -12.20 7.11 99.48 0.71 -11.50 16 7 C -0.25 -13.84 9.99 84.03 0.84 -13.00 16 8 H 0.08 4.32 7.83 -2.91 -0.02 4.29 16 9 N -0.75 -38.29 5.60 -343.45 -1.92 -40.22 16 10 C 0.15 5.71 6.37 86.38 0.55 6.26 16 11 C 0.13 4.39 5.79 86.38 0.50 4.89 16 12 N -0.71 -18.31 5.49 -463.07 -2.54 -20.86 16 13 C 0.51 14.14 7.05 87.65 0.62 14.76 16 14 O -0.58 -21.70 15.28 -3.04 -0.05 -21.75 16 15 C -0.10 -1.92 3.48 -10.11 -0.04 -1.96 16 16 H 0.13 1.88 8.14 -2.39 -0.02 1.86 16 17 C -0.11 -2.13 6.22 31.37 0.20 -1.93 16 18 C 0.06 1.13 2.48 44.33 0.11 1.24 16 19 H 0.03 0.67 7.99 -2.39 -0.02 0.66 16 20 C -0.10 -1.45 5.75 30.91 0.18 -1.27 16 21 C -0.12 -1.51 5.95 31.10 0.19 -1.32 16 22 C -0.11 -1.29 6.08 30.74 0.19 -1.10 16 23 C 0.05 0.72 5.88 86.75 0.51 1.23 16 24 N -0.52 -8.67 4.86 -863.14 -4.20 -12.87 16 25 C 0.05 0.92 6.16 87.02 0.54 1.46 16 26 H 0.25 15.17 8.31 -92.71 -0.77 14.40 16 27 H 0.37 20.72 7.67 -92.71 -0.71 20.01 16 28 H 0.04 1.40 8.14 -2.39 -0.02 1.38 16 29 H 0.04 1.34 8.14 -2.38 -0.02 1.32 16 30 H 0.05 1.91 8.14 -2.39 -0.02 1.89 16 31 H 0.05 2.02 8.14 -2.39 -0.02 2.00 16 32 H 0.42 7.83 8.46 -92.71 -0.78 7.05 16 33 H 0.09 1.54 8.00 -2.39 -0.02 1.52 16 34 H 0.07 1.76 6.51 -2.39 -0.02 1.74 16 35 H 0.08 1.05 8.14 -2.39 -0.02 1.03 16 36 H 0.07 0.97 8.14 -2.39 -0.02 0.95 16 37 H 0.05 0.68 8.14 -2.38 -0.02 0.66 16 38 H 0.08 0.76 8.14 -2.39 -0.02 0.74 16 39 H 0.08 0.73 8.14 -2.38 -0.02 0.71 16 40 H 0.07 0.85 8.14 -2.39 -0.02 0.83 16 41 H 0.02 0.39 8.00 -2.39 -0.02 0.37 16 42 H 0.09 1.10 8.14 -2.39 -0.02 1.08 16 43 H 0.03 0.62 7.88 -2.39 -0.02 0.60 16 44 H 0.11 1.38 8.14 -2.39 -0.02 1.36 16 Total: -1.00 -70.50 348.36 -2.07 -72.58 By element: Atomic # 1 Polarization: 30.59 SS G_CDS: -0.51 Total: 30.07 kcal Atomic # 6 Polarization: 0.41 SS G_CDS: 4.84 Total: 5.25 kcal Atomic # 7 Polarization: -125.54 SS G_CDS: -8.38 Total: -133.93 kcal Atomic # 8 Polarization: -21.70 SS G_CDS: -0.05 Total: -21.75 kcal Atomic # 14 Polarization: 45.74 SS G_CDS: 2.03 Total: 47.77 kcal Total: -70.50 -2.07 -72.58 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001127255640.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.020 kcal (2) G-P(sol) polarization free energy of solvation -70.505 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.485 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.073 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.578 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.558 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds