Wall clock time and date at job start Tue Mar 31 2020 05:21:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31610 * 1 3 3 Si 1.86803 * 119.99962 * 2 1 4 4 H 1.48503 * 109.47274 * 180.02562 * 3 2 1 5 5 H 1.48495 * 109.47369 * 300.00464 * 3 2 1 6 6 H 1.48509 * 109.46569 * 60.00244 * 3 2 1 7 7 C 1.38811 * 120.00286 * 180.02562 * 2 1 3 8 8 H 1.08003 * 120.00394 * 180.02562 * 7 2 1 9 9 N 1.36938 * 119.99994 * 359.97438 * 7 2 1 10 10 C 1.46497 * 119.99884 * 180.02562 * 9 7 2 11 11 C 1.53010 * 109.46927 * 180.02562 * 10 9 7 12 12 N 1.46497 * 109.46927 * 180.02562 * 11 10 9 13 13 C 1.34779 * 119.99687 * 180.02562 * 12 11 10 14 14 O 1.21279 * 120.00070 * 359.97438 * 13 12 11 15 15 C 1.50700 * 119.99972 * 179.97438 * 13 12 11 16 16 H 1.08994 * 110.39155 * 302.24300 * 15 13 12 17 17 C 1.54990 * 110.34871 * 179.97438 * 15 13 12 18 18 C 1.53266 * 104.30479 * 243.69730 * 17 15 13 19 19 H 1.09000 * 110.29133 * 90.22215 * 18 17 15 20 20 C 1.52247 * 113.90079 * 215.51435 * 18 17 15 21 21 C 1.53663 * 107.57468 * 177.23860 * 20 18 17 22 22 C 1.52821 * 110.61221 * 303.87233 * 21 20 18 23 23 C 1.53619 * 110.69843 * 53.74992 * 22 21 20 24 24 N 1.45671 * 107.80256 * 302.62605 * 23 22 21 25 25 C 1.47095 * 116.53880 * 182.68664 * 24 23 22 26 26 H 0.96998 * 120.00298 * 359.97438 * 1 2 3 27 27 H 0.96996 * 120.00069 * 0.02562 * 9 7 2 28 28 H 1.08999 * 109.47709 * 60.00622 * 10 9 7 29 29 H 1.08998 * 109.46924 * 299.99874 * 10 9 7 30 30 H 1.08999 * 109.46810 * 59.99592 * 11 10 9 31 31 H 1.09001 * 109.47062 * 299.99932 * 11 10 9 32 32 H 0.96998 * 120.00406 * 359.97438 * 12 11 10 33 33 H 1.09002 * 110.48797 * 124.95323 * 17 15 13 34 34 H 1.09002 * 110.48706 * 2.43711 * 17 15 13 35 35 H 1.08998 * 109.84132 * 296.75911 * 20 18 17 36 36 H 1.09005 * 109.83754 * 57.72251 * 20 18 17 37 37 H 1.09001 * 109.24830 * 183.58143 * 21 20 18 38 38 H 1.08998 * 109.24588 * 64.16874 * 21 20 18 39 39 H 1.08995 * 109.22982 * 293.43475 * 22 21 20 40 40 H 1.09003 * 109.19755 * 174.04284 * 22 21 20 41 41 H 1.08999 * 109.79846 * 183.05263 * 23 22 21 42 42 H 1.09001 * 109.84379 * 62.22320 * 23 22 21 43 43 H 1.08995 * 110.61459 * 316.07847 * 25 24 23 44 44 H 1.09000 * 110.60861 * 79.06067 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.7101 1.3465 -0.0006 5 1 1.8913 2.3965 -1.2124 6 1 1.8913 2.3964 1.2126 7 6 2.0102 -1.2021 -0.0005 8 1 3.0902 -1.2021 -0.0001 9 7 1.3256 -2.3881 -0.0005 10 6 2.0582 -3.6567 -0.0005 11 6 1.0639 -4.8197 -0.0012 12 7 1.7965 -6.0884 -0.0006 13 6 1.1226 -7.2556 -0.0015 14 8 -0.0902 -7.2557 -0.0024 15 6 1.8761 -8.5607 -0.0014 16 1 2.5387 -8.6167 -0.8651 17 6 0.8871 -9.7541 -0.0020 18 6 1.1517 -10.4658 1.3294 19 1 0.5084 -10.0592 2.1097 20 6 1.0205 -11.9808 1.2557 21 6 1.3812 -12.5456 2.6385 22 6 2.7765 -12.0864 3.0599 23 6 2.8908 -10.5564 2.9836 24 7 2.5766 -10.1538 1.6194 25 6 2.6882 -8.7189 1.3153 26 1 -0.4850 0.8400 0.0004 27 1 0.3556 -2.3881 -0.0005 28 1 2.6848 -3.7146 0.8895 29 1 2.6848 -3.7144 -0.8905 30 1 0.4376 -4.7617 -0.8914 31 1 0.4369 -4.7622 0.8886 32 1 2.7664 -6.0884 -0.0002 33 1 1.0944 -10.4210 -0.8389 34 1 -0.1418 -9.3968 -0.0457 35 1 -0.0043 -12.2514 1.0014 36 1 1.7053 -12.3753 0.5049 37 1 1.3579 -13.6346 2.5991 38 1 0.6520 -12.1974 3.3701 39 1 3.5172 -12.5352 2.3982 40 1 2.9665 -12.4101 4.0833 41 1 3.9060 -10.2490 3.2346 42 1 2.1845 -10.0976 3.6757 43 1 2.2448 -8.1222 2.1124 44 1 3.7302 -8.4396 1.1597 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001127255642.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:21:21 Heat of formation + Delta-G solvation = -31.880994 kcal Electronic energy + Delta-G solvation = -21951.244546 eV Core-core repulsion = 18709.913535 eV Total energy + Delta-G solvation = -3241.331011 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.184 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.67951 -39.04225 -35.78520 -35.05000 -33.86144 -32.49388 -31.32652 -29.95090 -27.75750 -27.31256 -24.20647 -23.24341 -22.33234 -21.67626 -21.39824 -20.19118 -19.63896 -17.43564 -17.12494 -16.16312 -15.73982 -15.50251 -15.04785 -14.89213 -14.65986 -14.55540 -14.13397 -13.72777 -13.45568 -13.23151 -13.18168 -12.91326 -12.80457 -12.59529 -11.91178 -11.61918 -11.44629 -11.37322 -11.12784 -11.02725 -10.86557 -10.84131 -10.82489 -10.66602 -10.59147 -10.10129 -9.88068 -9.68080 -9.00908 -8.85043 -8.71093 -7.01140 -5.81265 -3.12073 2.66968 3.21086 3.40957 3.46298 3.48794 3.71376 4.20080 4.33556 4.55788 4.59831 4.67963 4.69512 4.75852 4.91590 5.05200 5.16116 5.22169 5.23135 5.35246 5.46014 5.48076 5.48688 5.54485 5.60348 5.63570 5.68673 5.75869 5.78687 5.81983 5.93678 5.94279 5.99396 6.09563 6.14149 6.47859 6.61318 6.68641 6.73187 6.89265 7.60334 7.64852 8.30166 8.36484 9.47659 10.02394 10.37068 11.41419 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.041370 B = 0.002586 C = 0.002507 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 676.658738 B =10825.698810 C =11167.045751 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.931 5.931 2 C -0.013 4.013 3 Si 0.910 3.090 4 H -0.280 1.280 5 H -0.290 1.290 6 H -0.291 1.291 7 C -0.243 4.243 8 H 0.072 0.928 9 N -0.730 5.730 10 C 0.145 3.855 11 C 0.110 3.890 12 N -0.721 5.721 13 C 0.515 3.485 14 O -0.539 6.539 15 C -0.112 4.112 16 H 0.107 0.893 17 C -0.107 4.107 18 C 0.061 3.939 19 H 0.053 0.947 20 C -0.104 4.104 21 C -0.122 4.122 22 C -0.113 4.113 23 C 0.053 3.947 24 N -0.523 5.523 25 C 0.054 3.946 26 H 0.256 0.744 27 H 0.386 0.614 28 H 0.024 0.976 29 H 0.024 0.976 30 H 0.069 0.931 31 H 0.068 0.932 32 H 0.400 0.600 33 H 0.077 0.923 34 H 0.094 0.906 35 H 0.067 0.933 36 H 0.074 0.926 37 H 0.063 0.937 38 H 0.057 0.943 39 H 0.070 0.930 40 H 0.064 0.936 41 H 0.075 0.925 42 H 0.034 0.966 43 H 0.047 0.953 44 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.336 -26.447 3.748 27.452 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.579 5.579 2 C -0.209 4.209 3 Si 0.741 3.259 4 H -0.205 1.205 5 H -0.218 1.218 6 H -0.218 1.218 7 C -0.374 4.374 8 H 0.090 0.910 9 N -0.375 5.375 10 C 0.017 3.983 11 C -0.014 4.014 12 N -0.372 5.372 13 C 0.300 3.700 14 O -0.416 6.416 15 C -0.134 4.134 16 H 0.125 0.875 17 C -0.145 4.145 18 C -0.046 4.046 19 H 0.071 0.929 20 C -0.142 4.142 21 C -0.159 4.159 22 C -0.151 4.151 23 C -0.076 4.076 24 N -0.247 5.247 25 C -0.074 4.074 26 H 0.066 0.934 27 H 0.220 0.780 28 H 0.042 0.958 29 H 0.042 0.958 30 H 0.087 0.913 31 H 0.086 0.914 32 H 0.234 0.766 33 H 0.096 0.904 34 H 0.113 0.887 35 H 0.086 0.914 36 H 0.093 0.907 37 H 0.082 0.918 38 H 0.076 0.924 39 H 0.088 0.912 40 H 0.083 0.917 41 H 0.094 0.906 42 H 0.053 0.947 43 H 0.065 0.935 44 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges 5.972 -26.576 3.468 27.458 hybrid contribution 0.171 1.547 0.601 1.669 sum 6.143 -25.029 4.069 26.091 Atomic orbital electron populations 1.69673 1.05167 1.25756 1.57274 1.24787 0.95573 0.97855 1.02684 0.86077 0.78725 0.83861 0.77249 1.20497 1.21752 1.21763 1.19237 0.91062 0.83840 1.43305 0.90972 1.42203 1.06016 0.99601 1.89687 1.20754 0.93479 0.85687 0.98395 1.21588 0.95466 0.81802 1.02517 1.45942 1.10428 1.05987 1.74844 1.20441 0.88158 0.85334 0.76042 1.90684 1.14011 1.87330 1.49608 1.22349 0.98050 0.92938 1.00023 0.87506 1.22194 1.00532 0.94776 0.97035 1.22471 0.88907 0.95987 0.97279 0.92937 1.21491 1.01515 0.93661 0.97514 1.21595 0.96870 1.00400 0.97064 1.21566 0.97656 0.94687 1.01188 1.22041 1.00914 0.96049 0.88563 1.63939 1.21047 1.15606 1.24143 1.22814 1.00374 0.89040 0.95216 0.93391 0.78014 0.95845 0.95774 0.91261 0.91394 0.76636 0.90445 0.88743 0.91433 0.90734 0.91824 0.92429 0.91163 0.91724 0.90606 0.94748 0.93514 0.89273 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -28.36 13.06 55.49 0.72 -27.63 16 2 C -0.01 -0.36 5.50 -17.43 -0.10 -0.46 16 3 Si 0.91 22.32 29.55 -169.99 -5.02 17.30 16 4 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 5 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 6 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 7 C -0.24 -6.81 9.99 -15.06 -0.15 -6.96 16 8 H 0.07 1.94 7.83 -52.48 -0.41 1.53 16 9 N -0.73 -18.62 5.60 -59.91 -0.34 -18.95 16 10 C 0.15 2.83 6.37 -4.04 -0.03 2.81 16 11 C 0.11 1.89 5.79 -4.04 -0.02 1.87 16 12 N -0.72 -9.71 5.54 -60.29 -0.33 -10.04 16 13 C 0.52 7.20 7.04 -10.98 -0.08 7.12 16 14 O -0.54 -9.73 15.27 5.56 0.08 -9.65 16 15 C -0.11 -1.15 3.50 -89.39 -0.31 -1.46 16 16 H 0.11 0.92 8.14 -51.93 -0.42 0.49 16 17 C -0.11 -1.10 6.21 -25.54 -0.16 -1.26 16 18 C 0.06 0.59 2.50 -66.95 -0.17 0.42 16 19 H 0.05 0.58 7.98 -51.93 -0.41 0.16 16 20 C -0.10 -0.81 5.64 -26.77 -0.15 -0.96 16 21 C -0.12 -0.85 5.95 -26.48 -0.16 -1.01 16 22 C -0.11 -0.79 6.06 -26.50 -0.16 -0.95 16 23 C 0.05 0.43 5.87 -4.17 -0.02 0.41 16 24 N -0.52 -4.84 4.84 -224.28 -1.09 -5.93 16 25 C 0.05 0.51 6.23 -2.38 -0.01 0.49 16 26 H 0.26 7.50 8.31 -40.82 -0.34 7.16 16 27 H 0.39 10.44 7.67 -40.82 -0.31 10.12 16 28 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 29 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 30 H 0.07 1.29 8.14 -51.93 -0.42 0.86 16 31 H 0.07 1.26 8.14 -51.93 -0.42 0.84 16 32 H 0.40 4.22 8.47 -40.82 -0.35 3.87 16 33 H 0.08 0.69 8.00 -51.93 -0.42 0.28 16 34 H 0.09 1.17 6.50 -51.93 -0.34 0.83 16 35 H 0.07 0.49 8.14 -51.93 -0.42 0.06 16 36 H 0.07 0.59 8.14 -51.93 -0.42 0.16 16 37 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 38 H 0.06 0.42 8.14 -51.93 -0.42 -0.01 16 39 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 40 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 41 H 0.08 0.57 8.14 -51.93 -0.42 0.15 16 42 H 0.03 0.30 7.99 -51.93 -0.41 -0.11 16 43 H 0.05 0.50 7.88 -51.93 -0.41 0.09 16 44 H 0.09 0.70 8.14 -51.93 -0.42 0.28 16 LS Contribution 348.30 15.07 5.25 5.25 Total: -1.00 -32.52 348.30 -9.93 -42.45 By element: Atomic # 1 Polarization: 14.84 SS G_CDS: -7.69 Total: 7.15 kcal Atomic # 6 Polarization: 1.57 SS G_CDS: -1.52 Total: 0.05 kcal Atomic # 7 Polarization: -61.53 SS G_CDS: -1.03 Total: -62.56 kcal Atomic # 8 Polarization: -9.73 SS G_CDS: 0.08 Total: -9.65 kcal Atomic # 14 Polarization: 22.32 SS G_CDS: -5.02 Total: 17.30 kcal Total LS contribution 5.25 Total: 5.25 kcal Total: -32.52 -9.93 -42.45 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001127255642.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.572 kcal (2) G-P(sol) polarization free energy of solvation -32.521 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.949 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.932 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.453 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.881 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds