Wall clock time and date at job start Tue Mar 31 2020 05:22:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86800 * 120.00169 * 2 1 4 4 H 1.48506 * 109.47264 * 269.99987 * 3 2 1 5 5 H 1.48495 * 109.47081 * 30.00246 * 3 2 1 6 6 H 1.48501 * 109.47149 * 150.00022 * 3 2 1 7 7 C 1.38811 * 119.99841 * 180.02562 * 2 1 3 8 8 H 1.08005 * 119.99867 * 180.02562 * 7 2 1 9 9 N 1.36935 * 120.00376 * 359.97438 * 7 2 1 10 10 C 1.46494 * 120.00363 * 180.02562 * 9 7 2 11 11 C 1.53004 * 109.47230 * 179.97438 * 10 9 7 12 12 N 1.46494 * 109.47230 * 179.97438 * 11 10 9 13 13 C 1.34779 * 120.00227 * 179.97438 * 12 11 10 14 14 O 1.21281 * 119.99649 * 355.03075 * 13 12 11 15 15 C 1.50702 * 120.00290 * 175.30148 * 13 12 11 16 16 H 1.08991 * 109.46967 * 326.30694 * 15 13 12 17 17 C 1.53002 * 109.46828 * 86.30650 * 15 13 12 18 18 C 1.53001 * 117.49928 * 4.32420 * 17 15 13 19 19 C 1.53006 * 117.49730 * 295.66663 * 17 15 13 20 20 N 1.46900 * 109.47062 * 206.30391 * 15 13 12 21 21 C 1.48532 * 110.99907 * 290.19481 * 20 15 13 22 22 C 1.54937 * 103.22819 * 159.72225 * 21 20 15 23 23 C 1.54599 * 102.91998 * 322.58859 * 22 21 20 24 24 C 1.47902 * 111.00038 * 47.59273 * 20 15 13 25 25 H 0.97001 * 119.99627 * 0.02562 * 1 2 3 26 26 H 0.97008 * 119.99484 * 359.97438 * 9 7 2 27 27 H 1.09000 * 109.47205 * 59.99694 * 10 9 7 28 28 H 1.09000 * 109.47140 * 299.99594 * 10 9 7 29 29 H 1.08998 * 109.46934 * 59.99326 * 11 10 9 30 30 H 1.09007 * 109.46808 * 299.99491 * 11 10 9 31 31 H 0.96998 * 120.00197 * 359.97438 * 12 11 10 32 32 H 1.08997 * 115.55104 * 150.00246 * 17 15 13 33 33 H 1.08998 * 117.49984 * 0.02562 * 18 17 15 34 34 H 1.09001 * 117.49054 * 145.02305 * 18 17 15 35 35 H 1.08997 * 117.49843 * 214.98426 * 19 17 15 36 36 H 1.09004 * 117.49771 * 0.02562 * 19 17 15 37 37 H 1.09004 * 110.66914 * 278.15565 * 21 20 15 38 38 H 1.09003 * 110.66745 * 41.29220 * 21 20 15 39 39 H 1.08997 * 110.72876 * 204.22798 * 22 21 20 40 40 H 1.08999 * 110.87709 * 81.01570 * 22 21 20 41 41 H 1.08999 * 110.30689 * 263.03786 * 23 22 21 42 42 H 1.09002 * 110.39553 * 140.91664 * 23 22 21 43 43 H 1.08993 * 109.91826 * 333.50963 * 24 20 15 44 44 H 1.09000 * 109.91253 * 94.60795 * 24 20 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4978 2.0464 -1.4001 5 1 1.4477 2.6526 0.7001 6 1 3.5478 1.4401 0.7000 7 6 2.0102 -1.2022 -0.0005 8 1 3.0902 -1.2022 -0.0001 9 7 1.3256 -2.3881 -0.0005 10 6 2.0580 -3.6568 -0.0005 11 6 1.0637 -4.8197 0.0001 12 7 1.7962 -6.0884 -0.0005 13 6 1.1223 -7.2556 0.0004 14 8 -0.0870 -7.2575 0.0928 15 6 1.8718 -8.5586 -0.1071 16 1 2.7506 -8.4212 -0.7370 17 6 2.3095 -9.0117 1.2872 18 6 1.8467 -8.1729 2.4802 19 6 3.3107 -8.1288 2.0350 20 7 0.9977 -9.5787 -0.7015 21 6 -0.0867 -9.9633 0.2377 22 6 -1.1553 -10.5907 -0.6923 23 6 -1.0771 -9.7040 -1.9563 24 6 0.3200 -9.0579 -1.9085 25 1 -0.4849 0.8401 -0.0004 26 1 0.3555 -2.3880 0.0002 27 1 2.6847 -3.7145 0.8894 28 1 2.6846 -3.7145 -0.8906 29 1 0.4367 -4.7621 -0.8896 30 1 0.4375 -4.7618 0.8904 31 1 2.7661 -6.0885 -0.0016 32 1 2.3853 -10.0897 1.4290 33 1 1.2301 -7.2986 2.2719 34 1 1.6184 -8.6993 3.4070 35 1 4.0447 -8.6260 2.6691 36 1 3.6571 -7.2249 1.5338 37 1 0.2722 -10.6960 0.9605 38 1 -0.4861 -9.0848 0.7447 39 1 -2.1448 -10.5299 -0.2392 40 1 -0.9045 -11.6244 -0.9302 41 1 -1.8502 -8.9361 -1.9282 42 1 -1.1819 -10.3127 -2.8544 43 1 0.2258 -7.9740 -1.8430 44 1 0.8879 -9.3280 -2.7989 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001131786098.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:22:20 Heat of formation + Delta-G solvation = 14.593785 kcal Electronic energy + Delta-G solvation = -22754.207216 eV Core-core repulsion = 19514.891503 eV Total energy + Delta-G solvation = -3239.315714 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.184 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -41.05521 -37.94284 -37.04564 -35.66218 -33.84726 -32.16324 -31.21946 -28.93565 -28.17959 -26.35838 -23.74685 -22.69413 -22.10093 -21.65422 -21.30525 -20.60307 -19.59998 -17.38847 -17.07254 -16.95380 -16.02613 -15.54420 -15.05864 -14.85333 -14.56644 -14.43920 -14.10794 -13.97143 -13.22164 -13.07321 -13.02468 -12.59374 -12.43197 -11.90208 -11.66800 -11.56314 -11.41997 -11.34566 -11.15069 -11.12197 -10.87096 -10.83134 -10.65149 -10.55686 -10.42065 -10.14113 -10.01481 -9.79721 -9.02297 -8.87244 -8.33620 -7.02864 -5.82520 -3.13458 2.56672 3.15728 3.40341 3.45231 3.47246 3.53680 3.79272 4.39479 4.54597 4.61320 4.65261 4.72151 4.74393 4.81457 4.99787 5.19159 5.26885 5.36835 5.46367 5.46712 5.49733 5.55843 5.62995 5.70105 5.72158 5.79558 5.87191 5.90040 5.92223 5.94286 5.96843 6.03666 6.11254 6.18790 6.44277 6.65263 6.67553 6.72234 6.79737 7.52246 7.62986 8.21075 8.34956 9.46272 10.00588 10.35273 11.40026 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.025542 B = 0.003419 C = 0.003163 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1095.951699 B = 8187.227286 C = 8851.267249 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.931 5.931 2 C -0.011 4.011 3 Si 0.910 3.090 4 H -0.289 1.289 5 H -0.290 1.290 6 H -0.281 1.281 7 C -0.245 4.245 8 H 0.072 0.928 9 N -0.729 5.729 10 C 0.145 3.855 11 C 0.110 3.890 12 N -0.721 5.721 13 C 0.490 3.510 14 O -0.534 6.534 15 C 0.086 3.914 16 H 0.105 0.895 17 C -0.142 4.142 18 C -0.181 4.181 19 C -0.173 4.173 20 N -0.490 5.490 21 C 0.024 3.976 22 C -0.121 4.121 23 C -0.123 4.123 24 C 0.027 3.973 25 H 0.257 0.743 26 H 0.386 0.614 27 H 0.024 0.976 28 H 0.024 0.976 29 H 0.067 0.933 30 H 0.068 0.932 31 H 0.398 0.602 32 H 0.121 0.879 33 H 0.099 0.901 34 H 0.097 0.903 35 H 0.100 0.900 36 H 0.095 0.905 37 H 0.073 0.927 38 H 0.082 0.918 39 H 0.068 0.932 40 H 0.067 0.933 41 H 0.068 0.932 42 H 0.066 0.934 43 H 0.059 0.941 44 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.914 -22.826 0.496 23.164 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.579 5.579 2 C -0.208 4.208 3 Si 0.741 3.259 4 H -0.216 1.216 5 H -0.217 1.217 6 H -0.207 1.207 7 C -0.376 4.376 8 H 0.090 0.910 9 N -0.374 5.374 10 C 0.017 3.983 11 C -0.014 4.014 12 N -0.373 5.373 13 C 0.275 3.725 14 O -0.412 6.412 15 C -0.027 4.027 16 H 0.123 0.877 17 C -0.161 4.161 18 C -0.217 4.217 19 C -0.211 4.211 20 N -0.212 5.212 21 C -0.103 4.103 22 C -0.159 4.159 23 C -0.161 4.161 24 C -0.101 4.101 25 H 0.067 0.933 26 H 0.220 0.780 27 H 0.042 0.958 28 H 0.041 0.959 29 H 0.085 0.915 30 H 0.087 0.913 31 H 0.233 0.767 32 H 0.139 0.861 33 H 0.117 0.883 34 H 0.115 0.885 35 H 0.119 0.881 36 H 0.113 0.887 37 H 0.091 0.909 38 H 0.100 0.900 39 H 0.087 0.913 40 H 0.086 0.914 41 H 0.087 0.913 42 H 0.085 0.915 43 H 0.077 0.923 44 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 3.493 -23.130 0.408 23.396 hybrid contribution 0.175 1.783 0.147 1.797 sum 3.669 -21.347 0.555 21.667 Atomic orbital electron populations 1.69668 1.05170 1.25874 1.57145 1.24780 0.95563 0.97834 1.02597 0.86148 0.78624 0.83565 0.77572 1.21596 1.21664 1.20678 1.19189 0.91032 0.83851 1.43527 0.91038 1.42185 1.05974 0.99566 1.89706 1.20748 0.93467 0.85709 0.98374 1.21577 0.95493 0.81924 1.02397 1.46246 1.10432 1.06197 1.74473 1.21615 0.88827 0.86136 0.75890 1.90679 1.14093 1.87130 1.49311 1.21629 0.97111 0.87805 0.96111 0.87707 1.22116 1.04831 0.98805 0.90331 1.23194 0.97617 1.02556 0.98383 1.23040 0.92862 1.01671 1.03502 1.65218 1.18304 1.32522 1.05201 1.23458 0.90859 1.00697 0.95325 1.22412 0.98798 0.98987 0.95671 1.22271 0.96657 0.98956 0.98224 1.22994 0.94434 0.99418 0.93233 0.93343 0.78039 0.95837 0.95859 0.91465 0.91326 0.76749 0.86095 0.88300 0.88459 0.88148 0.88670 0.90852 0.89987 0.91308 0.91403 0.91334 0.91549 0.92303 0.90799 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -28.21 13.06 55.49 0.72 -27.48 16 2 C -0.01 -0.32 5.50 -17.43 -0.10 -0.42 16 3 Si 0.91 22.24 29.55 -169.99 -5.02 17.22 16 4 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 5 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 6 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 7 C -0.25 -6.83 9.99 -15.06 -0.15 -6.98 16 8 H 0.07 1.91 7.83 -52.48 -0.41 1.50 16 9 N -0.73 -18.47 5.60 -59.91 -0.34 -18.80 16 10 C 0.15 2.82 6.37 -4.04 -0.03 2.79 16 11 C 0.11 1.85 5.79 -4.04 -0.02 1.83 16 12 N -0.72 -9.52 5.43 -60.29 -0.33 -9.85 16 13 C 0.49 6.62 3.09 -10.98 -0.03 6.59 16 14 O -0.53 -8.95 12.39 5.56 0.07 -8.89 16 15 C 0.09 0.94 2.84 -68.86 -0.20 0.74 16 16 H 0.11 1.00 8.14 -51.93 -0.42 0.58 16 17 C -0.14 -1.33 4.66 -90.61 -0.42 -1.75 16 18 C -0.18 -1.86 9.68 -26.69 -0.26 -2.12 16 19 C -0.17 -1.48 10.11 -26.69 -0.27 -1.75 16 20 N -0.49 -5.58 5.40 -223.89 -1.21 -6.79 16 21 C 0.02 0.27 5.18 -1.90 -0.01 0.26 16 22 C -0.12 -1.23 7.06 -24.87 -0.18 -1.40 16 23 C -0.12 -1.33 6.93 -25.37 -0.18 -1.51 16 24 C 0.03 0.32 6.08 -2.75 -0.02 0.30 16 25 H 0.26 7.50 8.31 -40.82 -0.34 7.16 16 26 H 0.39 10.37 7.67 -40.82 -0.31 10.05 16 27 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 28 H 0.02 0.45 8.14 -51.93 -0.42 0.02 16 29 H 0.07 1.23 8.14 -51.93 -0.42 0.80 16 30 H 0.07 1.26 8.14 -51.93 -0.42 0.84 16 31 H 0.40 4.28 7.41 -40.82 -0.30 3.98 16 32 H 0.12 1.05 7.77 -51.93 -0.40 0.65 16 33 H 0.10 1.29 6.38 -51.93 -0.33 0.96 16 34 H 0.10 0.89 8.14 -51.93 -0.42 0.47 16 35 H 0.10 0.72 8.14 -51.93 -0.42 0.29 16 36 H 0.09 0.80 6.97 -51.93 -0.36 0.44 16 37 H 0.07 0.74 7.62 -51.93 -0.40 0.34 16 38 H 0.08 1.14 5.55 -51.93 -0.29 0.85 16 39 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 40 H 0.07 0.62 8.14 -51.93 -0.42 0.19 16 41 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 42 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 43 H 0.06 0.83 5.28 -51.93 -0.27 0.56 16 44 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 LS Contribution 344.53 15.07 5.19 5.19 Total: -1.00 -31.46 344.53 -10.05 -41.52 By element: Atomic # 1 Polarization: 18.59 SS G_CDS: -7.29 Total: 11.31 kcal Atomic # 6 Polarization: -1.57 SS G_CDS: -1.85 Total: -3.42 kcal Atomic # 7 Polarization: -61.78 SS G_CDS: -1.15 Total: -62.92 kcal Atomic # 8 Polarization: -8.95 SS G_CDS: 0.07 Total: -8.89 kcal Atomic # 14 Polarization: 22.24 SS G_CDS: -5.02 Total: 17.22 kcal Total LS contribution 5.19 Total: 5.19 kcal Total: -31.46 -10.05 -41.52 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001131786098.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.110 kcal (2) G-P(sol) polarization free energy of solvation -31.465 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.646 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.052 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.517 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.594 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds