Wall clock time and date at job start Tue Mar 31 2020 05:22:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86803 * 119.99930 * 2 1 4 4 H 1.48499 * 109.47231 * 240.00071 * 3 2 1 5 5 H 1.48502 * 109.47148 * 359.97438 * 3 2 1 6 6 H 1.48502 * 109.46979 * 119.99876 * 3 2 1 7 7 C 1.38805 * 120.00384 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00547 * 180.02562 * 7 2 1 9 9 N 1.36943 * 120.00033 * 359.97438 * 7 2 1 10 10 C 1.46498 * 120.00332 * 179.97438 * 9 7 2 11 11 C 1.52999 * 109.47161 * 180.02562 * 10 9 7 12 12 N 1.46498 * 109.47161 * 179.97438 * 11 10 9 13 13 C 1.34776 * 120.00112 * 179.97438 * 12 11 10 14 14 O 1.21285 * 119.99847 * 355.17934 * 13 12 11 15 15 C 1.50694 * 120.00167 * 175.17627 * 13 12 11 16 16 H 1.09003 * 109.47331 * 32.92626 * 15 13 12 17 17 C 1.52992 * 109.47327 * 272.92555 * 15 13 12 18 18 C 1.53002 * 117.50118 * 132.66398 * 17 15 13 19 19 C 1.53003 * 117.50177 * 64.00507 * 17 15 13 20 20 N 1.46905 * 109.47077 * 152.92329 * 15 13 12 21 21 C 1.48534 * 110.99605 * 177.60353 * 20 15 13 22 22 C 1.54944 * 103.22151 * 159.72188 * 21 20 15 23 23 C 1.54599 * 102.92399 * 322.58527 * 22 21 20 24 24 C 1.47900 * 111.00117 * 294.99963 * 20 15 13 25 25 H 0.96999 * 119.99709 * 0.02562 * 1 2 3 26 26 H 0.97002 * 119.99492 * 0.02562 * 9 7 2 27 27 H 1.08996 * 109.46928 * 60.00126 * 10 9 7 28 28 H 1.09004 * 109.46865 * 300.00221 * 10 9 7 29 29 H 1.09000 * 109.47296 * 59.99506 * 11 10 9 30 30 H 1.09007 * 109.46740 * 300.00081 * 11 10 9 31 31 H 0.96997 * 119.99672 * 0.02562 * 12 11 10 32 32 H 1.08998 * 115.55425 * 278.33207 * 17 15 13 33 33 H 1.09005 * 117.49702 * 0.02562 * 18 17 15 34 34 H 1.09000 * 117.49953 * 145.02009 * 18 17 15 35 35 H 1.08994 * 117.50516 * 214.98348 * 19 17 15 36 36 H 1.09003 * 117.49667 * 359.97438 * 19 17 15 37 37 H 1.08997 * 110.67163 * 278.15397 * 21 20 15 38 38 H 1.08998 * 110.66771 * 41.29385 * 21 20 15 39 39 H 1.09004 * 110.72342 * 204.22604 * 22 21 20 40 40 H 1.08999 * 110.72548 * 80.94811 * 22 21 20 41 41 H 1.09002 * 110.30676 * 263.04349 * 23 22 21 42 42 H 1.08997 * 110.30668 * 140.87623 * 23 22 21 43 43 H 1.08998 * 109.91645 * 333.51244 * 24 20 15 44 44 H 1.09003 * 109.91162 * 94.60796 * 24 20 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.1039 1.6965 -1.2125 5 1 1.2852 2.7465 -0.0006 6 1 3.1039 1.6964 1.2125 7 6 2.0103 -1.2020 0.0005 8 1 3.0903 -1.2021 0.0010 9 7 1.3257 -2.3881 0.0016 10 6 2.0582 -3.6568 0.0016 11 6 1.0640 -4.8197 0.0022 12 7 1.7965 -6.0884 0.0016 13 6 1.1227 -7.2556 0.0026 14 8 -0.0869 -7.2575 0.0922 15 6 1.8720 -8.5584 -0.1078 16 1 2.8397 -8.4638 0.3850 17 6 2.0827 -8.9021 -1.5837 18 6 3.4857 -9.3340 -2.0151 19 6 2.9530 -7.9550 -2.4124 20 7 1.0961 -9.6258 0.5376 21 6 1.7778 -10.9381 0.3983 22 6 1.1463 -11.7874 1.5299 23 6 0.9816 -10.7657 2.6784 24 6 0.9741 -9.3871 1.9921 25 1 -0.4850 0.8401 -0.0004 26 1 0.3557 -2.3880 0.0016 27 1 2.6855 -3.7141 0.8911 28 1 2.6842 -3.7148 -0.8889 29 1 0.4369 -4.7621 -0.8875 30 1 0.4377 -4.7617 0.8925 31 1 2.7665 -6.0883 0.0013 32 1 1.2356 -9.3730 -2.0824 33 1 4.2585 -9.3737 -1.2474 34 1 3.5615 -10.0888 -2.7979 35 1 2.6787 -7.8031 -3.4562 36 1 3.3751 -7.0868 -1.9061 37 1 1.5683 -11.3789 -0.5763 38 1 2.8518 -10.8317 0.5508 39 1 1.8158 -12.5953 1.8253 40 1 0.1776 -12.1811 1.2220 41 1 1.8190 -10.8383 3.3723 42 1 0.0401 -10.9331 3.2015 43 1 1.8180 -8.7931 2.3430 44 1 0.0400 -8.8677 2.2061 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001131786099.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:22:22 Heat of formation + Delta-G solvation = 7.986724 kcal Electronic energy + Delta-G solvation = -22242.298401 eV Core-core repulsion = 19002.696184 eV Total energy + Delta-G solvation = -3239.602217 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.184 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.42089 -38.38184 -37.09049 -35.62119 -33.76923 -32.23329 -31.17927 -29.10811 -28.23068 -26.47715 -23.65702 -22.66443 -22.00048 -21.60694 -21.27922 -20.59702 -19.86974 -17.36038 -17.20281 -16.64785 -16.06095 -15.58617 -15.26557 -14.74925 -14.53686 -14.43400 -14.08293 -13.70613 -13.34387 -13.17247 -12.92953 -12.72303 -12.61268 -12.33583 -11.80389 -11.59399 -11.52868 -11.39208 -11.26356 -11.09731 -10.84319 -10.80781 -10.78507 -10.69277 -10.54393 -10.14791 -9.80357 -9.45747 -8.96560 -8.78749 -8.58853 -6.99443 -5.79341 -3.10219 2.72565 3.09013 3.42571 3.46319 3.46688 3.48265 3.88005 4.35756 4.43325 4.54471 4.59078 4.63838 4.68251 4.76237 4.85783 4.99689 5.03395 5.24354 5.27334 5.38427 5.44691 5.50399 5.55343 5.56692 5.59039 5.66142 5.76845 5.79749 5.84412 5.86123 5.93753 5.97500 5.99016 6.16439 6.51328 6.65473 6.67944 6.71080 6.80187 7.64934 7.67333 8.37815 8.41266 9.49386 10.04345 10.39111 11.43179 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.027500 B = 0.003088 C = 0.002898 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1017.954549 B = 9064.390194 C = 9658.764370 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.931 5.931 2 C -0.011 4.011 3 Si 0.910 3.090 4 H -0.285 1.285 5 H -0.290 1.290 6 H -0.285 1.285 7 C -0.245 4.245 8 H 0.071 0.929 9 N -0.729 5.729 10 C 0.146 3.854 11 C 0.113 3.887 12 N -0.725 5.725 13 C 0.518 3.482 14 O -0.518 6.518 15 C 0.095 3.905 16 H 0.059 0.941 17 C -0.142 4.142 18 C -0.175 4.175 19 C -0.171 4.171 20 N -0.492 5.492 21 C 0.039 3.961 22 C -0.124 4.124 23 C -0.130 4.130 24 C 0.034 3.966 25 H 0.257 0.743 26 H 0.386 0.614 27 H 0.023 0.977 28 H 0.024 0.976 29 H 0.068 0.932 30 H 0.068 0.932 31 H 0.395 0.605 32 H 0.118 0.882 33 H 0.093 0.907 34 H 0.097 0.903 35 H 0.100 0.900 36 H 0.097 0.903 37 H 0.084 0.916 38 H 0.044 0.956 39 H 0.071 0.929 40 H 0.075 0.925 41 H 0.066 0.934 42 H 0.073 0.927 43 H 0.041 0.959 44 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.550 -25.101 0.359 26.214 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.579 5.579 2 C -0.208 4.208 3 Si 0.741 3.259 4 H -0.212 1.212 5 H -0.216 1.216 6 H -0.212 1.212 7 C -0.376 4.376 8 H 0.089 0.911 9 N -0.374 5.374 10 C 0.017 3.983 11 C -0.011 4.011 12 N -0.377 5.377 13 C 0.302 3.698 14 O -0.392 6.392 15 C -0.017 4.017 16 H 0.076 0.924 17 C -0.161 4.161 18 C -0.212 4.212 19 C -0.209 4.209 20 N -0.216 5.216 21 C -0.088 4.088 22 C -0.162 4.162 23 C -0.168 4.168 24 C -0.094 4.094 25 H 0.067 0.933 26 H 0.220 0.780 27 H 0.041 0.959 28 H 0.041 0.959 29 H 0.087 0.913 30 H 0.087 0.913 31 H 0.229 0.771 32 H 0.136 0.864 33 H 0.111 0.889 34 H 0.116 0.884 35 H 0.119 0.881 36 H 0.115 0.885 37 H 0.102 0.898 38 H 0.062 0.938 39 H 0.089 0.911 40 H 0.094 0.906 41 H 0.084 0.916 42 H 0.092 0.908 43 H 0.059 0.941 44 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges 6.247 -24.940 0.168 25.711 hybrid contribution 1.482 1.108 0.365 1.886 sum 7.729 -23.832 0.532 25.060 Atomic orbital electron populations 1.69659 1.05151 1.25973 1.57087 1.24778 0.95559 0.97807 1.02646 0.86227 0.78500 0.83325 0.77852 1.21189 1.21591 1.21197 1.19144 0.90986 0.83886 1.43588 0.91116 1.42185 1.06010 0.99551 1.89692 1.20745 0.93495 0.85740 0.98287 1.21553 0.95394 0.81620 1.02512 1.45982 1.10122 1.05995 1.75620 1.20209 0.88257 0.84597 0.76752 1.90711 1.13831 1.87139 1.47543 1.21320 0.94839 0.90805 0.94745 0.92371 1.22050 0.95486 1.05326 0.93230 1.23083 0.95922 0.98580 1.03617 1.23033 1.03077 0.93742 1.01034 1.64585 1.45339 1.00734 1.10958 1.23220 0.96168 0.89558 0.99861 1.22486 1.01509 0.97306 0.94875 1.22389 1.02358 0.94220 0.97823 1.22914 1.02216 0.97216 0.87016 0.93290 0.77987 0.95945 0.95864 0.91343 0.91348 0.77099 0.86357 0.88853 0.88422 0.88131 0.88451 0.89753 0.93753 0.91063 0.90587 0.91565 0.90827 0.94077 0.89477 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -28.43 13.06 55.49 0.72 -27.70 16 2 C -0.01 -0.33 5.50 -17.43 -0.10 -0.43 16 3 Si 0.91 22.36 29.55 -169.99 -5.02 17.34 16 4 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 5 H -0.29 -7.17 7.11 56.52 0.40 -6.77 16 6 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 7 C -0.25 -6.88 9.99 -15.06 -0.15 -7.03 16 8 H 0.07 1.90 7.83 -52.49 -0.41 1.49 16 9 N -0.73 -18.69 5.60 -59.91 -0.34 -19.03 16 10 C 0.15 2.87 6.37 -4.04 -0.03 2.85 16 11 C 0.11 1.98 5.79 -4.04 -0.02 1.95 16 12 N -0.72 -10.14 5.33 -60.29 -0.32 -10.46 16 13 C 0.52 7.71 6.11 -10.99 -0.07 7.65 16 14 O -0.52 -9.96 16.25 5.55 0.09 -9.87 16 15 C 0.10 1.07 1.77 -68.87 -0.12 0.95 16 16 H 0.06 0.57 7.75 -51.93 -0.40 0.17 16 17 C -0.14 -1.40 4.25 -90.62 -0.39 -1.79 16 18 C -0.18 -1.30 10.16 -26.69 -0.27 -1.57 16 19 C -0.17 -1.55 9.98 -26.69 -0.27 -1.82 16 20 N -0.49 -5.65 4.79 -223.89 -1.07 -6.72 16 21 C 0.04 0.34 5.70 -1.89 -0.01 0.33 16 22 C -0.12 -0.93 7.06 -24.86 -0.18 -1.11 16 23 C -0.13 -1.08 6.93 -25.37 -0.18 -1.26 16 24 C 0.03 0.38 5.83 -2.76 -0.02 0.36 16 25 H 0.26 7.58 8.31 -40.82 -0.34 7.24 16 26 H 0.39 10.50 7.67 -40.82 -0.31 10.19 16 27 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 28 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 29 H 0.07 1.29 8.14 -51.93 -0.42 0.87 16 30 H 0.07 1.30 8.14 -51.93 -0.42 0.88 16 31 H 0.40 4.43 7.92 -40.82 -0.32 4.11 16 32 H 0.12 1.29 8.14 -51.93 -0.42 0.87 16 33 H 0.09 0.62 8.07 -51.93 -0.42 0.20 16 34 H 0.10 0.62 8.14 -51.93 -0.42 0.20 16 35 H 0.10 0.89 8.14 -51.93 -0.42 0.47 16 36 H 0.10 0.89 7.34 -51.93 -0.38 0.50 16 37 H 0.08 0.68 7.95 -51.93 -0.41 0.27 16 38 H 0.04 0.34 8.02 -51.93 -0.42 -0.07 16 39 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 40 H 0.08 0.59 8.14 -51.93 -0.42 0.17 16 41 H 0.07 0.48 8.14 -51.93 -0.42 0.05 16 42 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 43 H 0.04 0.44 7.65 -51.93 -0.40 0.05 16 44 H 0.09 1.16 7.97 -51.93 -0.41 0.75 16 LS Contribution 357.38 15.07 5.39 5.39 Total: -1.00 -33.06 357.38 -10.01 -43.08 By element: Atomic # 1 Polarization: 16.58 SS G_CDS: -7.68 Total: 8.90 kcal Atomic # 6 Polarization: 0.87 SS G_CDS: -1.79 Total: -0.91 kcal Atomic # 7 Polarization: -62.91 SS G_CDS: -1.00 Total: -63.91 kcal Atomic # 8 Polarization: -9.96 SS G_CDS: 0.09 Total: -9.87 kcal Atomic # 14 Polarization: 22.36 SS G_CDS: -5.02 Total: 17.34 kcal Total LS contribution 5.39 Total: 5.39 kcal Total: -33.06 -10.01 -43.08 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001131786099.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.063 kcal (2) G-P(sol) polarization free energy of solvation -33.063 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.999 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.012 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.076 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.987 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds