Wall clock time and date at job start Tue Mar 31 2020 05:22:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86803 * 119.99930 * 2 1 4 4 H 1.48499 * 109.47231 * 240.00071 * 3 2 1 5 5 H 1.48502 * 109.47148 * 359.97438 * 3 2 1 6 6 H 1.48502 * 109.46979 * 119.99876 * 3 2 1 7 7 C 1.38805 * 120.00384 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00547 * 180.02562 * 7 2 1 9 9 N 1.36943 * 120.00033 * 359.97438 * 7 2 1 10 10 C 1.46498 * 120.00332 * 179.97438 * 9 7 2 11 11 C 1.52999 * 109.47161 * 180.02562 * 10 9 7 12 12 N 1.46498 * 109.47161 * 179.97438 * 11 10 9 13 13 C 1.34776 * 120.00112 * 179.97438 * 12 11 10 14 14 O 1.21285 * 119.99847 * 355.17934 * 13 12 11 15 15 C 1.50694 * 120.00167 * 175.17627 * 13 12 11 16 16 H 1.09003 * 109.47331 * 32.92626 * 15 13 12 17 17 C 1.52992 * 109.47327 * 272.92555 * 15 13 12 18 18 C 1.53002 * 117.50118 * 132.66398 * 17 15 13 19 19 C 1.53003 * 117.50177 * 64.00507 * 17 15 13 20 20 N 1.46905 * 109.47077 * 152.92329 * 15 13 12 21 21 C 1.48534 * 110.99605 * 177.60353 * 20 15 13 22 22 C 1.54944 * 103.22151 * 159.72188 * 21 20 15 23 23 C 1.54599 * 102.92399 * 322.58527 * 22 21 20 24 24 C 1.47900 * 111.00117 * 294.99963 * 20 15 13 25 25 H 0.96999 * 119.99709 * 0.02562 * 1 2 3 26 26 H 0.97002 * 119.99492 * 0.02562 * 9 7 2 27 27 H 1.08996 * 109.46928 * 60.00126 * 10 9 7 28 28 H 1.09004 * 109.46865 * 300.00221 * 10 9 7 29 29 H 1.09000 * 109.47296 * 59.99506 * 11 10 9 30 30 H 1.09007 * 109.46740 * 300.00081 * 11 10 9 31 31 H 0.96997 * 119.99672 * 0.02562 * 12 11 10 32 32 H 1.08998 * 115.55425 * 278.33207 * 17 15 13 33 33 H 1.09005 * 117.49702 * 0.02562 * 18 17 15 34 34 H 1.09000 * 117.49953 * 145.02009 * 18 17 15 35 35 H 1.08994 * 117.50516 * 214.98348 * 19 17 15 36 36 H 1.09003 * 117.49667 * 359.97438 * 19 17 15 37 37 H 1.08997 * 110.67163 * 278.15397 * 21 20 15 38 38 H 1.08998 * 110.66771 * 41.29385 * 21 20 15 39 39 H 1.09004 * 110.72342 * 204.22604 * 22 21 20 40 40 H 1.08999 * 110.72548 * 80.94811 * 22 21 20 41 41 H 1.09002 * 110.30676 * 263.04349 * 23 22 21 42 42 H 1.08997 * 110.30668 * 140.87623 * 23 22 21 43 43 H 1.08998 * 109.91645 * 333.51244 * 24 20 15 44 44 H 1.09003 * 109.91162 * 94.60796 * 24 20 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.1039 1.6965 -1.2125 5 1 1.2852 2.7465 -0.0006 6 1 3.1039 1.6964 1.2125 7 6 2.0103 -1.2020 0.0005 8 1 3.0903 -1.2021 0.0010 9 7 1.3257 -2.3881 0.0016 10 6 2.0582 -3.6568 0.0016 11 6 1.0640 -4.8197 0.0022 12 7 1.7965 -6.0884 0.0016 13 6 1.1227 -7.2556 0.0026 14 8 -0.0869 -7.2575 0.0922 15 6 1.8720 -8.5584 -0.1078 16 1 2.8397 -8.4638 0.3850 17 6 2.0827 -8.9021 -1.5837 18 6 3.4857 -9.3340 -2.0151 19 6 2.9530 -7.9550 -2.4124 20 7 1.0961 -9.6258 0.5376 21 6 1.7778 -10.9381 0.3983 22 6 1.1463 -11.7874 1.5299 23 6 0.9816 -10.7657 2.6784 24 6 0.9741 -9.3871 1.9921 25 1 -0.4850 0.8401 -0.0004 26 1 0.3557 -2.3880 0.0016 27 1 2.6855 -3.7141 0.8911 28 1 2.6842 -3.7148 -0.8889 29 1 0.4369 -4.7621 -0.8875 30 1 0.4377 -4.7617 0.8925 31 1 2.7665 -6.0883 0.0013 32 1 1.2356 -9.3730 -2.0824 33 1 4.2585 -9.3737 -1.2474 34 1 3.5615 -10.0888 -2.7979 35 1 2.6787 -7.8031 -3.4562 36 1 3.3751 -7.0868 -1.9061 37 1 1.5683 -11.3789 -0.5763 38 1 2.8518 -10.8317 0.5508 39 1 1.8158 -12.5953 1.8253 40 1 0.1776 -12.1811 1.2220 41 1 1.8190 -10.8383 3.3723 42 1 0.0401 -10.9331 3.2015 43 1 1.8180 -8.7931 2.3430 44 1 0.0400 -8.8677 2.2061 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001131786099.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:22:21 Heat of formation + Delta-G solvation = -16.085291 kcal Electronic energy + Delta-G solvation = -22243.342242 eV Core-core repulsion = 19002.696184 eV Total energy + Delta-G solvation = -3240.646058 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.184 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -41.44234 -39.39395 -37.82788 -37.28975 -35.47099 -33.26759 -32.86630 -29.92440 -29.68427 -27.61013 -25.51158 -23.47159 -23.12537 -22.67080 -22.31057 -21.37123 -20.90966 -19.32008 -18.30483 -17.58818 -16.93400 -16.84083 -16.57263 -16.38658 -15.61816 -15.53182 -15.27908 -15.01218 -14.79612 -14.60073 -14.41312 -13.50059 -13.38469 -13.13996 -13.11034 -13.04812 -12.65035 -12.55063 -12.39787 -12.23021 -12.18609 -12.13352 -12.06767 -11.88201 -11.56579 -11.41435 -11.24452 -10.98977 -10.59244 -10.16051 -9.40267 -9.08288 -7.97610 -5.29544 1.47580 1.51571 1.55674 1.57728 1.94775 2.56367 2.71767 3.06069 3.36378 3.58237 3.72360 3.74073 3.93253 3.95366 3.96820 4.00767 4.08691 4.15286 4.19036 4.24148 4.35517 4.50910 4.55644 4.61963 4.72109 4.80162 4.92573 4.98332 5.00383 5.01619 5.07592 5.10616 5.17295 5.20997 5.24814 5.30430 5.35842 5.47481 5.86705 5.94924 6.22755 6.53963 7.23061 7.28907 8.00409 8.23655 9.25960 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.027500 B = 0.003088 C = 0.002898 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1017.954549 B = 9064.390194 C = 9658.764370 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.972 5.972 2 C -0.077 4.077 3 Si 0.980 3.020 4 H -0.274 1.274 5 H -0.297 1.297 6 H -0.275 1.275 7 C -0.250 4.250 8 H 0.084 0.916 9 N -0.747 5.747 10 C 0.151 3.849 11 C 0.131 3.869 12 N -0.711 5.711 13 C 0.515 3.485 14 O -0.568 6.568 15 C 0.106 3.894 16 H 0.082 0.918 17 C -0.158 4.158 18 C -0.143 4.143 19 C -0.182 4.182 20 N -0.517 5.517 21 C 0.041 3.959 22 C -0.120 4.120 23 C -0.126 4.126 24 C 0.032 3.968 25 H 0.253 0.747 26 H 0.373 0.627 27 H 0.036 0.964 28 H 0.039 0.961 29 H 0.051 0.949 30 H 0.049 0.951 31 H 0.413 0.587 32 H 0.103 0.897 33 H 0.110 0.890 34 H 0.112 0.888 35 H 0.098 0.902 36 H 0.097 0.903 37 H 0.088 0.912 38 H 0.061 0.939 39 H 0.095 0.905 40 H 0.068 0.932 41 H 0.083 0.917 42 H 0.071 0.929 43 H 0.043 0.957 44 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.635 -26.649 0.293 28.694 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.622 5.622 2 C -0.269 4.269 3 Si 0.808 3.192 4 H -0.200 1.200 5 H -0.223 1.223 6 H -0.201 1.201 7 C -0.382 4.382 8 H 0.101 0.899 9 N -0.391 5.391 10 C 0.024 3.976 11 C 0.006 3.994 12 N -0.364 5.364 13 C 0.301 3.699 14 O -0.446 6.446 15 C -0.006 4.006 16 H 0.099 0.901 17 C -0.177 4.177 18 C -0.180 4.180 19 C -0.220 4.220 20 N -0.242 5.242 21 C -0.085 4.085 22 C -0.158 4.158 23 C -0.164 4.164 24 C -0.096 4.096 25 H 0.061 0.939 26 H 0.205 0.795 27 H 0.054 0.946 28 H 0.057 0.943 29 H 0.070 0.930 30 H 0.067 0.933 31 H 0.250 0.750 32 H 0.121 0.879 33 H 0.128 0.872 34 H 0.131 0.869 35 H 0.117 0.883 36 H 0.116 0.884 37 H 0.106 0.894 38 H 0.079 0.921 39 H 0.114 0.886 40 H 0.087 0.913 41 H 0.102 0.898 42 H 0.090 0.910 43 H 0.061 0.939 44 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 9.413 -26.538 0.098 28.158 hybrid contribution 0.517 1.513 0.372 1.641 sum 9.930 -25.025 0.470 26.927 Atomic orbital electron populations 1.69837 1.06890 1.26407 1.59035 1.25690 0.96430 1.01530 1.03254 0.85118 0.77111 0.78542 0.78393 1.20021 1.22298 1.20069 1.19622 0.91739 0.84837 1.41956 0.89857 1.42430 1.05735 1.01108 1.89803 1.20828 0.93504 0.84025 0.99216 1.21106 0.94784 0.82719 1.00810 1.45786 1.10850 1.04662 1.75128 1.21030 0.87900 0.85822 0.75100 1.90688 1.16256 1.87883 1.49763 1.21254 0.94815 0.88505 0.96026 0.90082 1.21946 0.96663 1.06916 0.92180 1.23176 0.93892 0.97351 1.03596 1.23106 1.03318 0.94780 1.00802 1.64507 1.46750 1.02005 1.10977 1.23290 0.96876 0.87892 1.00460 1.22504 1.01737 0.97483 0.94031 1.22381 1.03058 0.92712 0.98214 1.22863 1.00467 0.98708 0.87558 0.93869 0.79521 0.94610 0.94310 0.93041 0.93280 0.75043 0.87909 0.87164 0.86931 0.88332 0.88437 0.89373 0.92112 0.88604 0.91295 0.89824 0.91024 0.93873 0.92998 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -60.51 13.06 21.65 0.28 -60.23 16 2 C -0.08 -4.43 5.50 84.86 0.47 -3.97 16 3 Si 0.98 45.87 29.55 68.60 2.03 47.90 16 4 H -0.27 -12.23 7.11 99.48 0.71 -11.53 16 5 H -0.30 -14.07 7.11 99.48 0.71 -13.36 16 6 H -0.27 -12.27 7.11 99.48 0.71 -11.56 16 7 C -0.25 -13.93 9.99 84.03 0.84 -13.09 16 8 H 0.08 4.33 7.83 -2.91 -0.02 4.31 16 9 N -0.75 -38.57 5.60 -343.46 -1.92 -40.50 16 10 C 0.15 5.85 6.37 86.38 0.55 6.40 16 11 C 0.13 4.66 5.79 86.38 0.50 5.16 16 12 N -0.71 -19.52 5.33 -463.06 -2.47 -21.98 16 13 C 0.52 15.43 6.11 87.66 0.54 15.97 16 14 O -0.57 -22.85 16.25 -3.05 -0.05 -22.89 16 15 C 0.11 2.26 1.77 44.16 0.08 2.34 16 16 H 0.08 1.35 7.75 -2.39 -0.02 1.33 16 17 C -0.16 -2.87 4.25 -10.79 -0.05 -2.92 16 18 C -0.14 -1.63 10.16 30.62 0.31 -1.32 16 19 C -0.18 -2.94 9.98 30.62 0.31 -2.64 16 20 N -0.52 -11.50 4.79 -862.25 -4.13 -15.63 16 21 C 0.04 0.61 5.70 86.65 0.49 1.10 16 22 C -0.12 -1.53 7.06 31.80 0.22 -1.31 16 23 C -0.13 -1.92 6.93 31.47 0.22 -1.70 16 24 C 0.03 0.70 5.83 86.45 0.50 1.21 16 25 H 0.25 15.23 8.31 -92.71 -0.77 14.46 16 26 H 0.37 20.92 7.67 -92.71 -0.71 20.20 16 27 H 0.04 1.32 8.14 -2.39 -0.02 1.30 16 28 H 0.04 1.42 8.14 -2.39 -0.02 1.40 16 29 H 0.05 2.01 8.14 -2.39 -0.02 2.00 16 30 H 0.05 1.94 8.14 -2.38 -0.02 1.92 16 31 H 0.41 8.46 7.92 -92.71 -0.73 7.73 16 32 H 0.10 2.20 8.14 -2.39 -0.02 2.18 16 33 H 0.11 0.94 8.07 -2.38 -0.02 0.92 16 34 H 0.11 1.00 8.14 -2.39 -0.02 0.98 16 35 H 0.10 1.62 8.14 -2.39 -0.02 1.60 16 36 H 0.10 1.55 7.34 -2.39 -0.02 1.54 16 37 H 0.09 1.22 7.95 -2.39 -0.02 1.21 16 38 H 0.06 0.70 8.02 -2.39 -0.02 0.68 16 39 H 0.10 0.78 8.14 -2.39 -0.02 0.76 16 40 H 0.07 0.98 8.14 -2.39 -0.02 0.96 16 41 H 0.08 0.99 8.14 -2.39 -0.02 0.97 16 42 H 0.07 1.11 8.14 -2.39 -0.02 1.09 16 43 H 0.04 0.90 7.65 -2.39 -0.02 0.88 16 44 H 0.05 1.48 7.97 -2.39 -0.02 1.46 16 Total: -1.00 -72.93 357.38 -1.74 -74.67 By element: Atomic # 1 Polarization: 33.90 SS G_CDS: -0.46 Total: 33.44 kcal Atomic # 6 Polarization: 0.24 SS G_CDS: 4.98 Total: 5.22 kcal Atomic # 7 Polarization: -130.10 SS G_CDS: -8.24 Total: -138.33 kcal Atomic # 8 Polarization: -22.85 SS G_CDS: -0.05 Total: -22.89 kcal Atomic # 14 Polarization: 45.87 SS G_CDS: 2.03 Total: 47.90 kcal Total: -72.93 -1.74 -74.67 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001131786099.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.583 kcal (2) G-P(sol) polarization free energy of solvation -72.931 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.348 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.737 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.668 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.085 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds