Wall clock time and date at job start Tue Mar 31 2020 05:34:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52998 * 109.46848 * 2 1 4 4 C 1.53003 * 109.46848 * 179.97438 * 3 2 1 5 5 N 1.46498 * 109.46983 * 179.97438 * 4 3 2 6 6 C 1.36937 * 120.00008 * 90.00339 * 5 4 3 7 7 H 1.08003 * 119.99548 * 326.28809 * 6 5 4 8 8 C 1.38812 * 120.00069 * 146.30233 * 6 5 4 9 9 N 1.31614 * 119.99863 * 337.09614 * 8 6 5 10 10 Si 1.86797 * 119.99874 * 157.10183 * 8 6 5 11 11 H 1.48503 * 109.47517 * 59.99513 * 10 8 6 12 12 H 1.48505 * 109.47014 * 179.97438 * 10 8 6 13 13 H 1.48504 * 109.47251 * 299.99535 * 10 8 6 14 14 C 1.46503 * 119.99860 * 269.99583 * 5 4 3 15 15 C 1.50697 * 109.46909 * 95.36506 * 14 5 4 16 16 C 1.39875 * 126.03615 * 269.68908 * 15 14 5 17 17 N 1.30842 * 108.19844 * 179.81903 * 16 15 14 18 18 N 1.40082 * 108.20688 * 0.44097 * 17 16 15 19 19 C 1.46494 * 126.04001 * 179.69856 * 18 17 16 20 20 C 1.53004 * 109.46908 * 305.02526 * 19 18 17 21 21 O 1.42903 * 109.47144 * 179.97438 * 20 19 18 22 22 C 1.42903 * 114.00150 * 179.97438 * 21 20 19 23 23 C 1.34946 * 107.92574 * 359.71611 * 18 17 16 24 24 H 1.09005 * 109.47201 * 180.02562 * 1 2 3 25 25 H 1.09002 * 109.47609 * 300.00280 * 1 2 3 26 26 H 1.09002 * 109.47049 * 60.00795 * 1 2 3 27 27 H 1.09000 * 109.47138 * 239.99509 * 2 1 3 28 28 H 1.09005 * 109.46660 * 119.99846 * 2 1 3 29 29 H 1.08993 * 109.47362 * 60.00077 * 3 2 1 30 30 H 1.09001 * 109.47018 * 299.99058 * 3 2 1 31 31 H 1.09006 * 109.47167 * 299.99701 * 4 3 2 32 32 H 1.09000 * 109.47138 * 59.99509 * 4 3 2 33 33 H 0.97008 * 119.99846 * 180.02562 * 9 8 6 34 34 H 1.09001 * 109.46791 * 215.36527 * 14 5 4 35 35 H 1.09000 * 109.46975 * 335.36112 * 14 5 4 36 36 H 1.08003 * 125.89968 * 359.97438 * 16 15 14 37 37 H 1.08999 * 109.47386 * 65.02157 * 19 18 17 38 38 H 1.08998 * 109.47758 * 185.02149 * 19 18 17 39 39 H 1.08996 * 109.46984 * 299.99500 * 20 19 18 40 40 H 1.08993 * 109.47436 * 59.99735 * 20 19 18 41 41 H 1.08996 * 109.46954 * 179.97438 * 22 21 20 42 42 H 1.08999 * 109.46989 * 300.00195 * 22 21 20 43 43 H 1.09001 * 109.46509 * 60.00058 * 22 21 20 44 44 H 1.07998 * 126.12685 * 180.02562 * 23 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4425 0.0006 5 7 4.0583 2.8237 0.0000 6 6 4.2861 3.4699 1.1856 7 1 3.6617 3.2627 2.0422 8 6 5.3192 4.3915 1.2865 9 7 6.3354 4.3348 0.4520 10 14 5.2673 5.7120 2.6067 11 1 5.2256 5.0717 3.9460 12 1 6.4796 6.5634 2.5031 13 1 4.0557 6.5504 2.4210 14 6 4.3030 3.5135 -1.2691 15 6 3.0916 4.3300 -1.6387 16 6 2.0084 3.8932 -2.4084 17 7 1.1547 4.8796 -2.5095 18 7 1.6732 5.9800 -1.8148 19 6 1.0372 7.2930 -1.6821 20 6 0.7208 7.8491 -3.0720 21 8 0.0999 9.1297 -2.9426 22 6 -0.2380 9.7405 -4.1895 23 6 2.8621 5.6171 -1.2897 24 1 -0.3634 -1.0277 0.0005 25 1 -0.3634 0.5139 0.8899 26 1 -0.3633 0.5137 -0.8901 27 1 1.8934 -0.5139 -0.8899 28 1 1.8933 -0.5138 0.8901 29 1 1.6767 1.9563 0.8899 30 1 1.6767 1.9563 -0.8901 31 1 3.9330 0.9288 0.8909 32 1 3.9337 0.9285 -0.8891 33 1 7.0576 4.9786 0.5227 34 1 5.1663 4.1709 -1.1646 35 1 4.4983 2.7788 -2.0502 36 1 1.8950 2.9105 -2.8420 37 1 0.1137 7.1935 -1.1118 38 1 1.7128 7.9734 -1.1638 39 1 1.6442 7.9487 -3.6423 40 1 0.0451 7.1689 -3.5903 41 1 -0.7049 10.7081 -4.0054 42 1 0.6658 9.8798 -4.7826 43 1 -0.9331 9.0993 -4.7316 44 1 3.5137 6.2419 -0.6968 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001139780775.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:34:02 Heat of formation + Delta-G solvation = 42.031309 kcal Electronic energy + Delta-G solvation = -22586.922608 eV Core-core repulsion = 19348.796675 eV Total energy + Delta-G solvation = -3238.125933 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.184 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -40.49934 -38.06563 -36.26050 -34.09559 -33.35738 -31.23355 -29.97240 -29.17317 -27.63405 -26.50079 -25.04861 -23.64362 -23.10835 -21.07502 -20.18806 -20.05589 -19.35894 -17.07620 -16.51923 -16.28946 -15.59530 -15.28416 -14.83526 -14.77807 -14.25873 -13.78475 -13.60719 -13.42051 -13.29816 -13.17894 -12.45799 -12.20946 -12.13158 -11.92955 -11.81189 -11.45721 -11.43773 -11.16180 -11.06800 -10.69453 -10.62292 -10.46647 -10.29665 -10.21354 -9.94102 -9.88476 -9.68134 -9.57151 -8.75279 -8.46046 -7.55186 -6.54461 -5.72319 -3.27002 2.52841 2.81475 3.35305 3.42667 3.44890 3.61786 3.81086 4.51379 4.75575 4.88369 5.11664 5.16919 5.24818 5.31065 5.39895 5.41707 5.43201 5.44901 5.64446 5.64909 5.71791 5.74583 5.86952 6.04671 6.20060 6.33129 6.37378 6.43889 6.45394 6.47724 6.67588 6.70771 6.81850 6.87814 7.06608 7.16199 7.24773 7.41087 7.70713 7.78895 7.88111 8.36194 8.56224 9.24601 9.89150 10.45464 11.25306 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.011254 B = 0.005769 C = 0.004237 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2487.319912 B = 4852.628265 C = 6606.825436 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.122 4.122 3 C -0.138 4.138 4 C 0.149 3.851 5 N -0.578 5.578 6 C -0.243 4.243 7 H 0.057 0.943 8 C 0.008 3.992 9 N -0.888 5.888 10 Si 0.887 3.113 11 H -0.282 1.282 12 H -0.290 1.290 13 H -0.285 1.285 14 C 0.202 3.798 15 C -0.210 4.210 16 C 0.049 3.951 17 N -0.318 5.318 18 N -0.386 5.386 19 C 0.144 3.856 20 C 0.054 3.946 21 O -0.393 6.393 22 C 0.035 3.965 23 C 0.063 3.937 24 H 0.044 0.956 25 H 0.049 0.951 26 H 0.050 0.950 27 H 0.054 0.946 28 H 0.055 0.945 29 H 0.052 0.948 30 H 0.057 0.943 31 H 0.044 0.956 32 H 0.032 0.968 33 H 0.254 0.746 34 H 0.106 0.894 35 H 0.032 0.968 36 H 0.170 0.830 37 H 0.084 0.916 38 H 0.098 0.902 39 H 0.054 0.946 40 H 0.064 0.936 41 H 0.087 0.913 42 H 0.042 0.958 43 H 0.042 0.958 44 H 0.165 0.835 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.562 3.204 -7.390 12.502 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.161 4.161 3 C -0.178 4.178 4 C 0.023 3.977 5 N -0.296 5.296 6 C -0.373 4.373 7 H 0.075 0.925 8 C -0.191 4.191 9 N -0.531 5.531 10 Si 0.717 3.283 11 H -0.208 1.208 12 H -0.216 1.216 13 H -0.212 1.212 14 C 0.075 3.925 15 C -0.223 4.223 16 C -0.137 4.137 17 N -0.140 5.140 18 N -0.172 5.172 19 C 0.022 3.978 20 C -0.024 4.024 21 O -0.311 6.311 22 C -0.062 4.062 23 C -0.081 4.081 24 H 0.063 0.937 25 H 0.068 0.932 26 H 0.069 0.931 27 H 0.073 0.927 28 H 0.073 0.927 29 H 0.071 0.929 30 H 0.075 0.925 31 H 0.062 0.938 32 H 0.050 0.950 33 H 0.064 0.936 34 H 0.123 0.877 35 H 0.050 0.950 36 H 0.187 0.813 37 H 0.103 0.897 38 H 0.117 0.883 39 H 0.072 0.928 40 H 0.082 0.918 41 H 0.105 0.895 42 H 0.060 0.940 43 H 0.061 0.939 44 H 0.182 0.818 Dipole moment (debyes) X Y Z Total from point charges -10.571 3.895 -7.655 13.621 hybrid contribution 0.600 0.493 0.848 1.150 sum -9.971 4.388 -6.807 12.846 Atomic orbital electron populations 1.21761 0.96892 1.00439 1.01508 1.21508 0.94907 0.98536 1.01113 1.22264 0.99637 0.94185 1.01710 1.20879 0.91084 0.87086 0.98690 1.43814 1.75557 1.08146 1.02123 1.18964 1.08922 1.19259 0.90191 0.92532 1.24958 0.94481 1.01635 0.98013 1.69930 1.07614 1.36232 1.39347 0.86602 0.76814 0.82533 0.82321 1.20806 1.21628 1.21185 1.19497 0.93265 0.94228 0.85527 1.21441 1.02060 0.94624 1.04142 1.23680 0.92894 0.97720 0.99400 1.77097 1.23106 0.94543 1.19225 1.48231 1.16421 1.09602 1.42961 1.21159 0.99636 0.80542 0.96499 1.22718 0.97578 0.84656 0.97451 1.87783 1.80387 1.32982 1.29957 1.22737 0.99395 0.98023 0.86029 1.22327 0.88202 0.97701 0.99910 0.93658 0.93189 0.93114 0.92712 0.92668 0.92897 0.92465 0.93760 0.94988 0.93588 0.87697 0.94988 0.81265 0.89728 0.88338 0.92797 0.91821 0.89483 0.93971 0.93934 0.81799 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.98 9.91 37.16 0.37 -1.62 16 2 C -0.12 -1.82 5.93 -26.73 -0.16 -1.98 16 3 C -0.14 -2.52 5.54 -26.73 -0.15 -2.66 16 4 C 0.15 3.08 5.71 -4.04 -0.02 3.06 16 5 N -0.58 -13.85 2.45 -174.60 -0.43 -14.28 16 6 C -0.24 -6.44 9.45 -15.06 -0.14 -6.58 16 7 H 0.06 1.53 7.93 -52.48 -0.42 1.12 16 8 C 0.01 0.22 5.00 -17.43 -0.09 0.13 16 9 N -0.89 -24.40 11.23 55.49 0.62 -23.78 16 10 Si 0.89 20.93 29.61 -169.99 -5.03 15.89 16 11 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 12 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 13 H -0.29 -6.66 7.11 56.52 0.40 -6.26 16 14 C 0.20 4.58 5.85 -5.19 -0.03 4.55 16 15 C -0.21 -4.32 5.63 -105.05 -0.59 -4.91 16 16 C 0.05 0.92 10.36 -17.36 -0.18 0.74 16 17 N -0.32 -5.96 12.42 30.63 0.38 -5.58 16 18 N -0.39 -6.91 3.68 -61.37 -0.23 -7.14 16 19 C 0.14 2.07 6.88 -4.04 -0.03 2.04 16 20 C 0.05 0.69 6.12 37.16 0.23 0.92 16 21 O -0.39 -4.90 10.70 -35.23 -0.38 -5.27 16 22 C 0.03 0.31 11.01 101.05 1.11 1.42 16 23 C 0.06 1.24 11.36 -17.22 -0.20 1.05 16 24 H 0.04 0.52 8.14 -51.93 -0.42 0.10 16 25 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 26 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 27 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 28 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 29 H 0.05 1.07 8.14 -51.93 -0.42 0.65 16 30 H 0.06 1.06 6.03 -51.93 -0.31 0.75 16 31 H 0.04 0.94 8.04 -51.93 -0.42 0.53 16 32 H 0.03 0.62 7.86 -51.93 -0.41 0.21 16 33 H 0.25 6.79 8.31 -40.82 -0.34 6.45 16 34 H 0.11 2.69 5.28 -51.93 -0.27 2.41 16 35 H 0.03 0.68 7.83 -51.93 -0.41 0.28 16 36 H 0.17 2.77 7.73 -52.48 -0.41 2.37 16 37 H 0.08 1.18 8.14 -51.93 -0.42 0.76 16 38 H 0.10 1.28 8.07 -51.93 -0.42 0.86 16 39 H 0.05 0.70 8.14 -51.93 -0.42 0.27 16 40 H 0.06 0.86 8.14 -51.93 -0.42 0.43 16 41 H 0.09 0.62 8.14 -51.93 -0.42 0.20 16 42 H 0.04 0.34 8.14 -51.93 -0.42 -0.08 16 43 H 0.04 0.35 8.14 -51.93 -0.42 -0.08 16 44 H 0.16 3.27 8.06 -52.49 -0.42 2.84 16 LS Contribution 363.02 15.07 5.47 5.47 Total: -1.00 -29.06 363.02 -7.16 -36.22 By element: Atomic # 1 Polarization: 9.97 SS G_CDS: -7.69 Total: 2.28 kcal Atomic # 6 Polarization: -3.94 SS G_CDS: 0.12 Total: -3.82 kcal Atomic # 7 Polarization: -51.12 SS G_CDS: 0.35 Total: -50.77 kcal Atomic # 8 Polarization: -4.90 SS G_CDS: -0.38 Total: -5.27 kcal Atomic # 14 Polarization: 20.93 SS G_CDS: -5.03 Total: 15.89 kcal Total LS contribution 5.47 Total: 5.47 kcal Total: -29.06 -7.16 -36.22 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001139780775.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.252 kcal (2) G-P(sol) polarization free energy of solvation -29.063 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 49.189 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.157 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.221 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.031 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds